pycom11g26280

rRNA processing

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0012951
Physical Location & Seq
Reverse (-)
28880192 .. 28881746
1555 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1029 bp
ATGACTTCAGGCCTACCAATACTCGATGAAATGACGATATGCATGCTATTTTTGTTTAAAAAAAAAAAAAAAATTGCGCGCTGTCTAGTATTGTTGGATCATTTGGCTAGCTACAATAATAAAAATGAACTGTTATTAGCACGCCCAAATATCTCATTCTACACTTCTCACAAATCCAGCGGCTTACAAATAAATTTGTGTTGCCTGGCCAAATCTTCTGCAAGTCTCTCCTTTGCACTTGCACTAGCTCACACTTTACTTACCCCTAATCTGCAAATTAGGGTTTCCCATTCGTCCTCTTTCCTCCCCAATTTCTCAATACTTCCCAAATTCCGCTCAACAATGAAGAATCAACACCCAAAACATGAAGGAAACGGAGAGAAATTGAGCGGCTCGAGATCGAATAGCATGAAGAAGAAGAAGAACATGAGGAGGATGGGCGGTCAAGGCCTTTCGCTCGAGGCCTTTGCGAATGCCAAATCGAACAGCAGCTACTTCAACCCAGCTTTGATTAAGAAGCAGAAGGAGTTCTACAAGAATTCCAAATATGTGAACAAGTATAAGAAGTCACTGAAACAACAGCAGAGCAATCCTCCGTTGGCGATAAGCCGCTTCGAGGAGGAGATGGAAACCAAAGATGGTAAAAAGGAGAGCGAAACGGGATATGTTAGTAAGGAGAATCAGACTGAATGTGGTAGTAAAATGGAGAATGGAGCTGGAGATAGTAGTGAAAAGGAGAATGAAACTGGAGGTGGTAGTAAGATGAGCAAGAATGACAAGAAGAAAAAGAAGTACGGTGCTCGTAGTATAATGAAAATGTATGAGATGAAACATGAAGATGAACAGAAGGAGAGAATGGAGAGGGAGGCGATTATTCAGGCAAAGAAGGAAGAACGAGAAAAGGCGGAAGCACGAAGGAAGTCTGCTAGGGAGAAGATGCTTAAGAAAACGCATAAAGGTCAGCCTGTTATGAAGTACAGAATTCAGCATCTTTTGGAGACTATTCAAGGTTCTTCAAAGCAAGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
rRNA_processing

Protein Analysis

343

Amino Acids

38.91

Weight (kDa)

9.87

Isoelectric Point (pI)

49.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
rRNA_processing PF08524 173 - 336 7.3e-06 rRNA processing
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012951)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G03180 AT4G03180
fragaria_vesca FvH4_2g24850
malus_domestica MD03G1276600.v1.1 MD11G1299100.v1.1
prunus_persica Prupe.8G253400_v2.0.a1
pyrus_communis pycom03g22030 pycom11g26280
rosa_chinensis RchiOBHm_Chr6g0292701
rosa_laevigata RLG00000011998
rosa_multiflora Rmu_sc0000515.1_g000023
rosa_roxburghii Rroxscaffold_7G00174760
rosa_rugosa Rorug06G0229000
rosa_samantha Rh6AG342300 Rh6BG349600 Rh6CG356500 Rh6DG342600
rosa_wichuraiana Rw6G029840

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 336, 390
AccII CGCG 1 cut(s) 79
AciI CCGC 6 cut(s) 180, 334, 390, 441, 610, 905
AclWI GGATC 1 cut(s) 105
AcoI YGGCCR 1 cut(s) 207
AcsI RAATTY 4 cut(s) 193, 329, 538, 981
AfaI GTAC 2 cut(s) 794, 977
AfiI CCNNNNNNNGG 1 cut(s) 616
AflII CTTAAG 1 cut(s) 941
AgsI TTSAA 3 cut(s) 499, 1007, 1017
AjnI CCWGG 1 cut(s) 204
AluBI AGCT 5 cut(s) 111, 248, 492, 506, 716
AluI AGCT 5 cut(s) 111, 248, 492, 506, 716
Alw21I GWGCWC 1 cut(s) 802
Alw26I GTCTC 2 cut(s) 230, 992
AlwI GGATC 1 cut(s) 105
Ama87I CYCGRG 2 cut(s) 394, 458
AoxI GGCC 4 cut(s) 10, 207, 448, 462
ApeKI GCWGC 1 cut(s) 489
ApoI RAATTY 4 cut(s) 193, 329, 538, 981
Asp700I GAANNNNTTC 1 cut(s) 527
AspLEI GCGC 2 cut(s) 79, 81
AsuNHI GCTAGC 1 cut(s) 107
AvaI CYCGRG 2 cut(s) 394, 458
BalI TGGCCA 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 515, 547
Bbv12I GWGCWC 1 cut(s) 802
BbvI GCAGC 1 cut(s) 501
BccI CCATC 3 cut(s) 430, 619, 632
BcgI CGANNNNNNTGC 4 cut(s) 25, 59, 449, 483
BciT130I CCWGG 1 cut(s) 206
BcoDI GTCTC 2 cut(s) 230, 992
BfaI CTAG 4 cut(s) 86, 108, 245, 927
BfrI CTTAAG 1 cut(s) 941
BisI GCNGC 4 cut(s) 181, 391, 490, 610
BlsI GCNGC 4 cut(s) 182, 392, 491, 611
Bme1390I CCNGG 1 cut(s) 206
BmeT110I CYCGRG 2 cut(s) 394, 458
BmrFI CCNGG 1 cut(s) 206
BmsI GCATC 2 cut(s) 927, 997
BmtI GCTAGC 1 cut(s) 111
BplI GAGNNNNNCTC 2 cut(s) 577, 609
BpmI CTGGAG 2 cut(s) 738, 768
Bsc4I CCNNNNNNNGG 1 cut(s) 616
Bse1I ACTGG 1 cut(s) 751
BseBI CCWGG 1 cut(s) 206
BseGI GGATG 1 cut(s) 441
BseLI CCNNNNNNNGG 1 cut(s) 616
BseNI ACTGG 1 cut(s) 751
BsePI GCGCGC 1 cut(s) 77
BseRI GAGGAG 3 cut(s) 445, 632, 635
BseXI GCAGC 1 cut(s) 501
BseYI CCCAGC 1 cut(s) 502
Bsh1236I CGCG 1 cut(s) 79
BshFI GGCC 4 cut(s) 12, 209, 450, 464
BsiHKAI GWGCWC 1 cut(s) 802
BsiHKCI CYCGRG 2 cut(s) 394, 458
BslI CCNNNNNNNGG 1 cut(s) 616
BsmAI GTCTC 2 cut(s) 230, 992
BsmI GAATGC 1 cut(s) 478
BsnI GGCC 4 cut(s) 12, 209, 450, 464
BsoBI CYCGRG 2 cut(s) 394, 458
Bsp1286I GDGCHC 1 cut(s) 802
Bsp143I GATC 2 cut(s) 97, 398
BspACI CCGC 6 cut(s) 180, 334, 390, 441, 610, 905
BspANI GGCC 4 cut(s) 12, 209, 450, 464
BspFNI CGCG 1 cut(s) 79
BspOI GCTAGC 1 cut(s) 111
BspPI GGATC 1 cut(s) 105
BspTI CTTAAG 1 cut(s) 941
BsrBI CCGCTC 2 cut(s) 336, 390
BsrI ACTGG 1 cut(s) 751
BssHII GCGCGC 1 cut(s) 77
BssMI GATC 2 cut(s) 97, 398
Bst2UI CCWGG 1 cut(s) 206
Bst4CI ACNGT 2 cut(s) 132, 797
BstAFI CTTAAG 1 cut(s) 941
BstC8I GCNNGC 5 cut(s) 44, 79, 109, 142, 1023
BstF5I GGATG 1 cut(s) 441
BstFNI CGCG 1 cut(s) 79
BstHHI GCGC 2 cut(s) 79, 81
BstKTI GATC 2 cut(s) 100, 401
BstMAI GTCTC 2 cut(s) 230, 992
BstMBI GATC 2 cut(s) 97, 398
BstMWI GCNNNNNNNGC 1 cut(s) 447
BstNI CCWGG 1 cut(s) 206
BstNSI RCATGY 1 cut(s) 46
BstSCI CCNGG 1 cut(s) 204
BstUI CGCG 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 501
BsuRI GGCC 4 cut(s) 12, 209, 450, 464
BtsCI GGATG 1 cut(s) 441
BtsIMutI CAGTG 1 cut(s) 569
Cac8I GCNNGC 5 cut(s) 44, 79, 109, 142, 1023
CfoI GCGC 2 cut(s) 79, 81
Csp6I GTAC 2 cut(s) 793, 976
CviAII CATG 5 cut(s) 43, 365, 409, 427, 833
CviQI GTAC 2 cut(s) 793, 976
DpnI GATC 2 cut(s) 99, 400
DpnII GATC 2 cut(s) 97, 398
DraI TTTAAA 1 cut(s) 58
EaeI YGGCCR 1 cut(s) 207
EciI GGCGGA 1 cut(s) 920
Eco147I AGGCCT 3 cut(s) 12, 450, 464
Eco88I CYCGRG 2 cut(s) 394, 458
EcoRI GAATTC 2 cut(s) 538, 981
EcoRII CCWGG 1 cut(s) 204
EcoT22I ATGCAT 1 cut(s) 44
FaeI CATG 5 cut(s) 46, 368, 412, 430, 836
FatI CATG 5 cut(s) 42, 364, 408, 426, 832
Fnu4HI GCNGC 4 cut(s) 181, 391, 490, 610
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 4 cut(s) 181, 391, 490, 610
FspBI CTAG 4 cut(s) 86, 108, 245, 927
GlaI GCGC 2 cut(s) 78, 80
GluI GCNGC 4 cut(s) 181, 391, 490, 610
GsaI CCCAGC 1 cut(s) 506
GsuI CTGGAG 2 cut(s) 738, 768
HaeIII GGCC 4 cut(s) 12, 209, 450, 464
HhaI GCGC 2 cut(s) 79, 81
Hin1II CATG 5 cut(s) 46, 368, 412, 430, 836
Hin6I GCGC 2 cut(s) 77, 79
HinP1I GCGC 2 cut(s) 77, 79
HinfI GANTC 2 cut(s) 349, 679
Hpy166II GTNNAC 1 cut(s) 553
Hpy188I TCNGA 1 cut(s) 684
Hpy188III TCNNGA 1 cut(s) 396
Hpy8I GTNNAC 1 cut(s) 553
HpyAV CCTTC 5 cut(s) 362, 517, 841, 880, 909
HpyCH4III ACNGT 2 cut(s) 132, 797
HpyCH4V TGCA 5 cut(s) 42, 221, 236, 242, 274
HpyF10VI GCNNNNNNNGC 1 cut(s) 447
Hsp92II CATG 5 cut(s) 46, 368, 412, 430, 836
HspAI GCGC 2 cut(s) 77, 79
Kzo9I GATC 2 cut(s) 97, 398
LmnI GCTCC 1 cut(s) 713
LpnPI CCDG 8 cut(s) 190, 191, 218, 516, 702, 732, 863, 978
Lsp1109I GCAGC 1 cut(s) 501
LweI GCATC 2 cut(s) 927, 997
MaeI CTAG 4 cut(s) 86, 108, 245, 927
MaeIII GTNAC 1 cut(s) 567
MalI GATC 2 cut(s) 99, 400
MbiI CCGCTC 2 cut(s) 336, 390
MboI GATC 2 cut(s) 97, 398
MhlI GDGCHC 1 cut(s) 802
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 8 cut(s) 72, 193, 276, 310, 329, 383, 538, 981
MluNI TGGCCA 1 cut(s) 209
MmeI TCCRAC 1 cut(s) 75
Mox20I TGGCCA 1 cut(s) 209
Mph1103I ATGCAT 1 cut(s) 44
MroXI GAANNNNTTC 1 cut(s) 527
MscI TGGCCA 1 cut(s) 209
MseI TTAA 3 cut(s) 57, 513, 942
MslI CAYNNNNRTG 1 cut(s) 837
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 180
MspCI CTTAAG 1 cut(s) 941
MspR9I CCNGG 1 cut(s) 206
Mva1269I GAATGC 1 cut(s) 478
MvaI CCWGG 1 cut(s) 206
MvnI CGCG 1 cut(s) 79
MwoI GCNNNNNNNGC 1 cut(s) 447
NdeII GATC 2 cut(s) 97, 398
NheI GCTAGC 1 cut(s) 107
NlaIII CATG 5 cut(s) 46, 368, 412, 430, 836
NmuCI GTSAC 1 cut(s) 567
NsiI ATGCAT 1 cut(s) 44
NspI RCATGY 1 cut(s) 46
PaeI GCATGC 1 cut(s) 46
PaeR7I CTCGAG 2 cut(s) 394, 458
PauI GCGCGC 1 cut(s) 77
PceI AGGCCT 3 cut(s) 12, 450, 464
PctI GAATGC 1 cut(s) 478
PdmI GAANNNNTTC 1 cut(s) 527
PfeI GAWTC 2 cut(s) 349, 679
PkrI GCNGC 4 cut(s) 182, 392, 491, 611
Psp6I CCWGG 1 cut(s) 204
PspFI CCCAGC 1 cut(s) 502
PspGI CCWGG 1 cut(s) 204
PspXI VCTCGAGB 1 cut(s) 458
PsrI GAACNNNNNNTAC 2 cut(s) 476, 508
PteI GCGCGC 1 cut(s) 77
RsaI GTAC 2 cut(s) 794, 977
RsaNI GTAC 2 cut(s) 793, 976
RseI CAYNNNNRTG 1 cut(s) 837
SaqAI TTAA 3 cut(s) 57, 513, 942
SatI GCNGC 4 cut(s) 181, 391, 490, 610
Sau3AI GATC 2 cut(s) 97, 398
ScrFI CCNGG 1 cut(s) 206
SduI GDGCHC 1 cut(s) 802
SetI ASST 8 cut(s) 113, 250, 494, 508, 718, 754, 961, 1012
SfaNI GCATC 2 cut(s) 927, 997
Sfr274I CTCGAG 2 cut(s) 394, 458
SlaI CTCGAG 2 cut(s) 394, 458
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 3 cut(s) 394, 458, 941
SmoI CTYRAG 3 cut(s) 394, 458, 941
SphI GCATGC 1 cut(s) 46
Sse9I AATT 8 cut(s) 72, 193, 276, 310, 329, 383, 538, 981
SseBI AGGCCT 3 cut(s) 12, 450, 464
SsiI CCGC 6 cut(s) 180, 334, 390, 441, 610, 905
SspMI CTAG 4 cut(s) 86, 108, 245, 927
StuI AGGCCT 3 cut(s) 12, 450, 464
StyD4I CCNGG 1 cut(s) 204
TaaI ACNGT 2 cut(s) 132, 797
TaqI TCGA 6 cut(s) 24, 395, 401, 459, 482, 615
TasI AATT 8 cut(s) 72, 193, 276, 310, 329, 383, 538, 981
TatI WGTACW 1 cut(s) 975
TauI GCSGC 3 cut(s) 183, 393, 612
TfiI GAWTC 2 cut(s) 349, 679
Tru1I TTAA 3 cut(s) 57, 513, 942
Tru9I TTAA 3 cut(s) 57, 513, 942
TscAI CASTG 1 cut(s) 576
TseFI GTSAC 1 cut(s) 567
TseI GCWGC 1 cut(s) 489
Tsp45I GTSAC 1 cut(s) 567
TspGWI ACGGA 2 cut(s) 390, 585
TspRI CASTG 1 cut(s) 576
Vha464I CTTAAG 1 cut(s) 941
XapI RAATTY 4 cut(s) 193, 329, 538, 981
XceI RCATGY 1 cut(s) 46
XhoI CTCGAG 2 cut(s) 394, 458
XmnI GAANNNNTTC 1 cut(s) 527
XspI CTAG 4 cut(s) 86, 108, 245, 927
Zsp2I ATGCAT 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.