pycom12561g00150

Translation initiation factor eIF-2B subunit

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00012561
Physical Location & Seq
Reverse (-)
174778 .. 178796
4019 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12561g00150.5

Sequence Viewer

Length: 711 bp
ATGGATTTCCAAGTGGTAGTCTTAGCCGGCGGCACCTCGAAGAATCTTGCCCCTCTAGTCTCCAAGGAGGTTCCAAAGGCTCTGCTTCCAGTTGCGAACCGTCCGGTTATCTCATACGTTCTGGAGCTCTTGGAACTCAGTAACCTTAAGGACCTCATAGTTGTTGTTGAAGGGCAAGATGCAGCCGTACTTGTTGGAAGTTGGATTTCCGGGGCCTATGTCGATCGTTTACATGTTGAGGTTGCGGCAGTCCCTGAGGATGTTGGAACAGCTGGTGCACTTCGGGCCATTGCACACCACTTGACTGCAAAAGACATTTTGGTTGTGAGTGGCGATATTGTCTCTGATGTTTCTCCCGGTGCTGTAGCTGCTGCTCATAGACGTCATGATGCAGTATTAACTGCAATGCTTTGTTCTGCTCCTATAAGTGGACCTTCAGATTCGGTATCCTCTGTTGGAAAAGACAAAGCCAAGAAACCAGGACACTACAATATCATTGGGCTGGATCCAACAAAGCAGTTTTTACTGTACATTGCAACAGGAGCGGAACTTGAGAAAGATATTCGAATTCAGAAGAGCATACTCCGTGCAGTTGGCCAGATGGAAATTCGATCTGATCTCATGGATGCTCATTTATATGCATTCAAGAGGTCTGTTCTACAAGAAGTTTTGGATCGATCAAAAGGATACCTTTCAAAGTTTAAAGTGTGA

Protein Analysis

237

Amino Acids

25.21

Weight (kDa)

7.06

Isoelectric Point (pI)

34.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 385
AccB1I GGYRCC 1 cut(s) 32
AccBSI CCGCTC 1 cut(s) 545
AciI CCGC 3 cut(s) 30, 245, 545
AclWI GGATC 3 cut(s) 500, 513, 681
AcoI YGGCCR 1 cut(s) 595
AcsI RAATTY 2 cut(s) 567, 606
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 382
AfaI GTAC 2 cut(s) 189, 530
AfiI CCNNNNNNNGG 1 cut(s) 428
AflII CTTAAG 1 cut(s) 146
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 3 cut(s) 170, 646, 696
AjnI CCWGG 1 cut(s) 478
AluBI AGCT 3 cut(s) 127, 272, 368
AluI AGCT 3 cut(s) 127, 272, 368
Alw21I GWGCWC 2 cut(s) 129, 280
Alw26I GTCTC 2 cut(s) 64, 346
Alw44I GTGCAC 1 cut(s) 276
AlwI GGATC 3 cut(s) 500, 513, 681
AlwNI CAGNNNCTG 1 cut(s) 254
AoxI GGCC 3 cut(s) 213, 285, 595
ApaLI GTGCAC 1 cut(s) 276
ApeKI GCWGC 3 cut(s) 182, 368, 371
ApoI RAATTY 2 cut(s) 567, 606
AspS9I GGNCC 4 cut(s) 151, 213, 285, 431
AsuC2I CCSGG 2 cut(s) 211, 357
AsuII TTCGAA 1 cut(s) 565
AvaII GGWCC 2 cut(s) 151, 431
AxyI CCTNAGG 1 cut(s) 255
BaeGI GKGCMC 1 cut(s) 280
BalI TGGCCA 1 cut(s) 597
BamHI GGATCC 1 cut(s) 505
BanI GGYRCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 2 cut(s) 129, 280
BbvI GCAGC 3 cut(s) 194, 355, 358
BccI CCATC 1 cut(s) 595
BceAI ACGGC 1 cut(s) 170
BciT130I CCWGG 1 cut(s) 480
BciVI GTATCC 2 cut(s) 457, 680
BcnI CCSGG 2 cut(s) 211, 357
BcoDI GTCTC 2 cut(s) 64, 346
BfaI CTAG 1 cut(s) 56
BfmI CTRYAG 1 cut(s) 363
BfrI CTTAAG 1 cut(s) 146
BfuI GTATCC 2 cut(s) 457, 680
BisI GCNGC 5 cut(s) 31, 183, 246, 369, 372
BlsI GCNGC 5 cut(s) 32, 184, 247, 370, 373
Bme1390I CCNGG 3 cut(s) 211, 357, 480
Bme18I GGWCC 2 cut(s) 151, 431
BmgT120I GGNCC 4 cut(s) 151, 213, 285, 431
BmiI GGNNCC 4 cut(s) 34, 72, 214, 507
BmrFI CCNGG 3 cut(s) 211, 357, 480
BmsI GCATC 3 cut(s) 169, 379, 616
BpmI CTGGAG 1 cut(s) 143
Bpu14I TTCGAA 1 cut(s) 565
BpuEI CTTGAG 1 cut(s) 572
BpuMI CCSGG 2 cut(s) 211, 357
Bsa29I ATCGAT 1 cut(s) 676
BsaHI GRCGYC 1 cut(s) 382
BsaJI CCNNGG 2 cut(s) 63, 210
BsaWI WCCGGW 1 cut(s) 103
Bsc4I CCNNNNNNNGG 1 cut(s) 428
Bse118I RCCGGY 1 cut(s) 26
Bse1I ACTGG 1 cut(s) 89
Bse21I CCTNAGG 1 cut(s) 255
Bse3DI GCAATG 3 cut(s) 288, 411, 531
BseBI CCWGG 1 cut(s) 480
BseCI ATCGAT 1 cut(s) 676
BseDI CCNNGG 2 cut(s) 63, 210
BseGI GGATG 2 cut(s) 265, 631
BseLI CCNNNNNNNGG 1 cut(s) 428
BseMI GCAATG 3 cut(s) 288, 411, 531
BseMII CTCAG 2 cut(s) 151, 246
BseNI ACTGG 1 cut(s) 89
BseSI GKGCMC 1 cut(s) 280
BseXI GCAGC 3 cut(s) 194, 355, 358
BsgI GTGCAG 1 cut(s) 609
Bsh1285I CGRYCG 1 cut(s) 226
BshFI GGCC 3 cut(s) 215, 287, 597
BshNI GGYRCC 1 cut(s) 32
BshVI ATCGAT 1 cut(s) 676
BsiEI CGRYCG 1 cut(s) 226
BsiHKAI GWGCWC 2 cut(s) 129, 280
BsiSI CCGG 4 cut(s) 27, 104, 210, 357
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 1 cut(s) 428
BsmAI GTCTC 2 cut(s) 64, 346
BsmFI GGGAC 1 cut(s) 236
BsmI GAATGC 1 cut(s) 641
BsnI GGCC 3 cut(s) 215, 287, 597
Bsp119I TTCGAA 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 129, 280
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 6 cut(s) 223, 505, 611, 616, 673, 677
BspACI CCGC 3 cut(s) 30, 245, 545
BspANI GGCC 3 cut(s) 215, 287, 597
BspCNI CTCAG 2 cut(s) 150, 247
BspDI ATCGAT 1 cut(s) 676
BspHI TCATGA 1 cut(s) 385
BspLI GGNNCC 4 cut(s) 34, 72, 214, 507
BspPI GGATC 3 cut(s) 500, 513, 681
BspQI GCTCTTC 1 cut(s) 569
BspT104I TTCGAA 1 cut(s) 565
BspT107I GGYRCC 1 cut(s) 32
BspTI CTTAAG 1 cut(s) 146
BsrBI CCGCTC 1 cut(s) 545
BsrDI GCAATG 3 cut(s) 288, 411, 531
BsrFI RCCGGY 1 cut(s) 26
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 1 cut(s) 89
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 2 cut(s) 63, 210
BssMI GATC 6 cut(s) 223, 505, 611, 616, 673, 677
BssNI GRCGYC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 63
Bst2UI CCWGG 1 cut(s) 480
Bst4CI ACNGT 2 cut(s) 101, 528
Bst6I CTCTTC 1 cut(s) 569
BstACI GRCGYC 1 cut(s) 382
BstAFI CTTAAG 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 528
BstBI TTCGAA 1 cut(s) 565
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 22, 137, 255
BstF5I GGATG 2 cut(s) 265, 631
BstKTI GATC 6 cut(s) 226, 508, 614, 619, 676, 680
BstMAI GTCTC 2 cut(s) 64, 346
BstMBI GATC 6 cut(s) 223, 505, 611, 616, 673, 677
BstMCI CGRYCG 1 cut(s) 226
BstMWI GCNNNNNNNGC 3 cut(s) 284, 368, 542
BstNI CCWGG 1 cut(s) 480
BstNSI RCATGY 1 cut(s) 236
BstSCI CCNGG 3 cut(s) 209, 355, 478
BstSFI CTRYAG 1 cut(s) 363
BstSLI GKGCMC 1 cut(s) 280
BstV1I GCAGC 3 cut(s) 194, 355, 358
BstX2I RGATCY 1 cut(s) 505
BstYI RGATCY 1 cut(s) 505
Bsu15I ATCGAT 1 cut(s) 676
Bsu36I CCTNAGG 1 cut(s) 255
BsuI GTATCC 2 cut(s) 457, 680
BsuRI GGCC 3 cut(s) 215, 287, 597
BsuTUI ATCGAT 1 cut(s) 676
BtsCI GGATG 2 cut(s) 265, 631
Cac8I GCNNGC 1 cut(s) 28
CaiI CAGNNNCTG 1 cut(s) 254
CciI TCATGA 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 4 cut(s) 151, 213, 285, 431
ClaI ATCGAT 1 cut(s) 676
Csp6I GTAC 2 cut(s) 188, 529
CviAII CATG 3 cut(s) 233, 386, 622
CviQI GTAC 2 cut(s) 188, 529
DdeI CTNAG 3 cut(s) 22, 137, 255
DpnI GATC 6 cut(s) 225, 507, 613, 618, 675, 679
DpnII GATC 6 cut(s) 223, 505, 611, 616, 673, 677
DraI TTTAAA 1 cut(s) 703
EaeI YGGCCR 1 cut(s) 595
Eam1104I CTCTTC 1 cut(s) 569
EarI CTCTTC 1 cut(s) 569
Ecl136II GAGCTC 1 cut(s) 127
Eco130I CCWWGG 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 129
Eco47I GGWCC 2 cut(s) 151, 431
Eco53kI GAGCTC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 420
Eco81I CCTNAGG 1 cut(s) 255
EcoICRI GAGCTC 1 cut(s) 127
EcoO109I RGGNCCY 2 cut(s) 151, 213
EcoRI GAATTC 1 cut(s) 567
EcoRII CCWGG 1 cut(s) 478
EcoT14I CCWWGG 1 cut(s) 63
EcoT22I ATGCAT 1 cut(s) 643
EcoT38I GRGCYC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 63
FaeI CATG 3 cut(s) 236, 389, 625
FalI AAGNNNNNCTT 4 cut(s) 418, 450, 675, 707
FaqI GGGAC 1 cut(s) 236
FatI CATG 3 cut(s) 232, 385, 621
Fnu4HI GCNGC 5 cut(s) 31, 183, 246, 369, 372
FokI GGATG 2 cut(s) 272, 638
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 5 cut(s) 31, 183, 246, 369, 372
FspBI CTAG 1 cut(s) 56
GluI GCNGC 5 cut(s) 31, 183, 246, 369, 372
GsuI CTGGAG 1 cut(s) 143
HaeIII GGCC 3 cut(s) 215, 287, 597
HapII CCGG 4 cut(s) 27, 104, 210, 357
Hin1I GRCGYC 1 cut(s) 382
Hin1II CATG 3 cut(s) 236, 389, 625
HinfI GANTC 2 cut(s) 43, 440
HpaII CCGG 4 cut(s) 27, 104, 210, 357
Hpy166II GTNNAC 3 cut(s) 230, 278, 431
Hpy188I TCNGA 4 cut(s) 346, 439, 573, 616
Hpy188III TCNNGA 3 cut(s) 122, 386, 646
Hpy8I GTNNAC 3 cut(s) 230, 278, 431
HpyAV CCTTC 2 cut(s) 164, 444
HpyCH4III ACNGT 2 cut(s) 101, 528
HpyCH4IV ACGT 2 cut(s) 117, 382
HpyCH4V TGCA 9 cut(s) 182, 278, 293, 308, 392, 404, 536, 590, 641
HpyF10VI GCNNNNNNNGC 3 cut(s) 284, 368, 542
HpyF3I CTNAG 3 cut(s) 22, 137, 255
HpySE526I ACGT 2 cut(s) 117, 382
Hsp92I GRCGYC 1 cut(s) 382
Hsp92II CATG 3 cut(s) 236, 389, 625
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
Kzo9I GATC 6 cut(s) 223, 505, 611, 616, 673, 677
LguI GCTCTTC 1 cut(s) 569
LmnI GCTCC 3 cut(s) 124, 424, 542
Lsp1109I GCAGC 3 cut(s) 194, 355, 358
LweI GCATC 3 cut(s) 169, 379, 616
MaeI CTAG 1 cut(s) 56
MaeII ACGT 2 cut(s) 117, 382
MaeIII GTNAC 1 cut(s) 140
MalI GATC 6 cut(s) 225, 507, 613, 618, 675, 679
MbiI CCGCTC 1 cut(s) 545
MboI GATC 6 cut(s) 223, 505, 611, 616, 673, 677
MboII GAAGA 2 cut(s) 52, 586
MflI RGATCY 1 cut(s) 505
MhlI GDGCHC 2 cut(s) 129, 280
MlsI TGGCCA 1 cut(s) 597
MluCI AATT 2 cut(s) 567, 606
MluNI TGGCCA 1 cut(s) 597
MmeI TCCRAC 5 cut(s) 175, 182, 244, 436, 533
MnlI CCTC 8 cut(s) 46, 61, 63, 164, 232, 250, 460, 642
Mox20I TGGCCA 1 cut(s) 597
Mph1103I ATGCAT 1 cut(s) 643
MroNI GCCGGC 1 cut(s) 26
MscI TGGCCA 1 cut(s) 597
MseI TTAA 3 cut(s) 147, 398, 702
MslI CAYNNNNRTG 1 cut(s) 636
Msp20I TGGCCA 1 cut(s) 597
MspA1I CMGCKG 1 cut(s) 272
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 4 cut(s) 27, 104, 210, 357
MspR9I CCNGG 3 cut(s) 211, 357, 480
Mva1269I GAATGC 1 cut(s) 641
MvaI CCWGG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 284, 368, 542
NaeI GCCGGC 1 cut(s) 28
NciI CCSGG 2 cut(s) 211, 357
NdeII GATC 6 cut(s) 223, 505, 611, 616, 673, 677
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 3 cut(s) 236, 389, 625
NlaIV GGNNCC 4 cut(s) 34, 72, 214, 507
NsiI ATGCAT 1 cut(s) 643
NspI RCATGY 1 cut(s) 236
NspV TTCGAA 1 cut(s) 565
PagI TCATGA 1 cut(s) 385
PciI ACATGT 1 cut(s) 232
PciSI GCTCTTC 1 cut(s) 569
PctI GAATGC 1 cut(s) 641
PdiI GCCGGC 1 cut(s) 28
PfeI GAWTC 2 cut(s) 43, 440
PkrI GCNGC 5 cut(s) 32, 184, 247, 370, 373
Ple19I CGATCG 1 cut(s) 226
PpuMI RGGWCCY 1 cut(s) 151
PscI ACATGT 1 cut(s) 232
Psp124BI GAGCTC 1 cut(s) 129
Psp5II RGGWCCY 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 478
PspGI CCWGG 1 cut(s) 478
PspN4I GGNNCC 4 cut(s) 34, 72, 214, 507
PspPI GGNCC 4 cut(s) 151, 213, 285, 431
PspPPI RGGWCCY 1 cut(s) 151
PstNI CAGNNNCTG 1 cut(s) 254
PsuI RGATCY 1 cut(s) 505
PvuI CGATCG 1 cut(s) 226
PvuII CAGCTG 1 cut(s) 272
RsaI GTAC 2 cut(s) 189, 530
RsaNI GTAC 2 cut(s) 188, 529
RseI CAYNNNNRTG 1 cut(s) 636
SacI GAGCTC 1 cut(s) 129
SapI GCTCTTC 1 cut(s) 569
SaqAI TTAA 3 cut(s) 147, 398, 702
SatI GCNGC 5 cut(s) 31, 183, 246, 369, 372
Sau3AI GATC 6 cut(s) 223, 505, 611, 616, 673, 677
Sau96I GGNCC 4 cut(s) 151, 213, 285, 431
ScrFI CCNGG 3 cut(s) 211, 357, 480
SduI GDGCHC 2 cut(s) 129, 280
SfaNI GCATC 3 cut(s) 169, 379, 616
SfcI CTRYAG 1 cut(s) 363
SfuI TTCGAA 1 cut(s) 565
SinI GGWCC 2 cut(s) 151, 431
SmiMI CAYNNNNRTG 1 cut(s) 636
SmlI CTYRAG 2 cut(s) 146, 551
SmoI CTYRAG 2 cut(s) 146, 551
Sse9I AATT 2 cut(s) 567, 606
SsiI CCGC 3 cut(s) 30, 245, 545
SspMI CTAG 1 cut(s) 56
SstI GAGCTC 1 cut(s) 129
StyD4I CCNGG 3 cut(s) 209, 355, 478
StyI CCWWGG 1 cut(s) 63
TaaI ACNGT 2 cut(s) 101, 528
TaiI ACGT 2 cut(s) 120, 385
TaqI TCGA 5 cut(s) 38, 222, 565, 610, 676
TasI AATT 2 cut(s) 567, 606
TatI WGTACW 1 cut(s) 528
TauI GCSGC 2 cut(s) 33, 248
TfiI GAWTC 2 cut(s) 43, 440
Tru1I TTAA 3 cut(s) 147, 398, 702
Tru9I TTAA 3 cut(s) 147, 398, 702
TseI GCWGC 3 cut(s) 182, 368, 371
TspGWI ACGGA 1 cut(s) 575
Vha464I CTTAAG 1 cut(s) 146
VneI GTGCAC 1 cut(s) 276
VpaK11BI GGWCC 2 cut(s) 151, 431
XapI RAATTY 2 cut(s) 567, 606
XceI RCATGY 1 cut(s) 236
XspI CTAG 1 cut(s) 56
ZraI GACGTC 1 cut(s) 383
Zsp2I ATGCAT 1 cut(s) 643
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.