Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006736

Physical Location & Seq

Genomic Coordinates Forward (+)

78309746 .. 78311154

Gene Structure 1409 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000036275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGCGATGGATTTCCAAGTGGTGGTCTTAGCCGGCGGAACATCCAAGAAACTCGTCCCTCTCGTCTCTAAGGAGGTTCTGAAAGCTCTGCTTCCTGTGGTGAACCGGCCGGTTATCTCATATGTTCTGGAGCTCTTAGAACTCAGTAACCTTAAGGATATCATTATTGCAGTTGAAGGAAAAGAAGCGCATGATTGCGTTGAGCACTGGATTGTAGAAGCGTATATCGATCGATTATGTATCCAGCTCCACACACGATGTGCTTATGTGAGGGGCCGGTGGCGGGTGAGTGCCCAAGGGATCGATATATGGGAATATGTGAAGGGAAGTGGAAGCAAGAAAGGACGGAAGAAAAAGGCTGATTCACTTTTGCCGGGAATGTTGACTAAGCCTAGTTTTCGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010001 GO:0010033 GO:0010243 GO:0010467 GO:0014003 GO:0019538 GO:0019899 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0021782 GO:0022008 GO:0023052 GO:0030154 GO:0030900 GO:0032501 GO:0032502 GO:0032991 GO:0034284 GO:0034641 GO:0034645 GO:0042063 GO:0042221 GO:0043043 GO:0043170 GO:0043434 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051020 GO:0051716 GO:0060322 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep NTP_transf_3 NTP_transferase

Protein Analysis

135

Amino Acids

15.03

Weight (kDa)

9.45

Isoelectric Point (pI)

15.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transferase	PF00483	7 - 70	7.3e-08	Nucleotidyl transferase
NTP_transf_3	PF12804	7 - 74	4.9e-06	MobA-like NTP transferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19485
fragaria_vesca	FvH4_1g25390
malus_domestica	MD03G1163000.v1.1
prunus_persica	Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1
pyrus_communis	pycom12561g00150 pycom5153684g00170
rosa_chinensis	RchiOBHm_Chr2g0123421
rosa_laevigata	RLG00000018753 RLG00000036275
rosa_multiflora	Rmu_sc0018866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093620 Rroxscaffold_2G00120680 Rroxscaffold_5G00351380
rosa_rugosa	Rorug02G0245500 Rorug02G0245500
rosa_samantha	Rh2AG304300 Rh2BG312300 Rh2CG290800 Rh2DG328300 Rh5AG454400
rosa_wichuraiana	Rw2G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	22
AciI	CCGC	2 cut(s)	36, 283
AclWI	GGATC	1 cut(s)	308
AcoI	YGGCCR	1 cut(s)	107
AdeI	CACNNNGTG	1 cut(s)	260
AfiI	CCNNNNNNNGG	2 cut(s)	22, 283
AflII	CTTAAG	1 cut(s)	152
AgsI	TTSAA	1 cut(s)	176
AluBI	AGCT	3 cut(s)	86, 133, 247
AluI	AGCT	3 cut(s)	86, 133, 247
Alw21I	GWGCWC	2 cut(s)	135, 207
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	1 cut(s)	308
AoxI	GGCC	2 cut(s)	107, 274
AspLEI	GCGC	1 cut(s)	190
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	375
AsuHPI	GGTGA	2 cut(s)	112, 298
BaeGI	GKGCMC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	135
Bbv12I	GWGCWC	2 cut(s)	135, 207
BciVI	GTATCC	1 cut(s)	251
BcnI	CCSGG	1 cut(s)	375
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	1 cut(s)	393
BfrI	CTTAAG	1 cut(s)	152
BfuI	GTATCC	1 cut(s)	251
Bme1390I	CCNGG	1 cut(s)	375
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	375
BpmI	CTGGAG	1 cut(s)	149
BpuMI	CCSGG	1 cut(s)	375
Bsa29I	ATCGAT	3 cut(s)	228, 232, 303
BsaJI	CCNNGG	1 cut(s)	295
Bsc4I	CCNNNNNNNGG	2 cut(s)	22, 283
Bse118I	RCCGGY	4 cut(s)	32, 105, 109, 276
Bse1I	ACTGG	1 cut(s)	212
BseCI	ATCGAT	3 cut(s)	228, 232, 303
BseDI	CCNNGG	1 cut(s)	295
BseGI	GGATG	1 cut(s)	41
BseLI	CCNNNNNNNGG	2 cut(s)	22, 283
BseMII	CTCAG	1 cut(s)	157
BseNI	ACTGG	1 cut(s)	212
BseSI	GKGCMC	1 cut(s)	295
BseX3I	CGGCCG	1 cut(s)	107
Bsh1285I	CGRYCG	2 cut(s)	110, 232
BshFI	GGCC	2 cut(s)	109, 276
BshVI	ATCGAT	3 cut(s)	228, 232, 303
BsiEI	CGRYCG	2 cut(s)	110, 232
BsiHKAI	GWGCWC	2 cut(s)	135, 207
BsiSI	CCGG	5 cut(s)	33, 106, 110, 277, 374
BslFI	GGGAC	1 cut(s)	41
BslI	CCNNNNNNNGG	2 cut(s)	22, 283
BsmAI	GTCTC	1 cut(s)	70
BsmBI	CGTCTC	1 cut(s)	70
BsmFI	GGGAC	1 cut(s)	41
BsnI	GGCC	2 cut(s)	109, 276
Bsp1286I	GDGCHC	3 cut(s)	135, 207, 295
Bsp143I	GATC	2 cut(s)	229, 300
BspACI	CCGC	2 cut(s)	36, 283
BspANI	GGCC	2 cut(s)	109, 276
BspCNI	CTCAG	1 cut(s)	156
BspDI	ATCGAT	3 cut(s)	228, 232, 303
BspLI	GGNNCC	1 cut(s)	275
BspPI	GGATC	1 cut(s)	308
BspTI	CTTAAG	1 cut(s)	152
BsrFI	RCCGGY	4 cut(s)	32, 105, 109, 276
BsrI	ACTGG	1 cut(s)	212
BssAI	RCCGGY	4 cut(s)	32, 105, 109, 276
BssECI	CCNNGG	1 cut(s)	295
BssMI	GATC	2 cut(s)	229, 300
BssT1I	CCWWGG	1 cut(s)	295
BstAFI	CTTAAG	1 cut(s)	152
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	5 cut(s)	28, 69, 136, 143, 387
BstF5I	GGATG	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	190
BstKTI	GATC	2 cut(s)	232, 303
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	229, 300
BstMCI	CGRYCG	2 cut(s)	110, 232
BstSCI	CCNGG	1 cut(s)	373
BstSLI	GKGCMC	1 cut(s)	295
BstZI	CGGCCG	1 cut(s)	107
Bsu15I	ATCGAT	3 cut(s)	228, 232, 303
BsuI	GTATCC	1 cut(s)	251
BsuRI	GGCC	2 cut(s)	109, 276
BsuTUI	ATCGAT	3 cut(s)	228, 232, 303
BtgZI	GCGATG	1 cut(s)	20
BtsCI	GGATG	1 cut(s)	41
BtsIMutI	CAGTG	1 cut(s)	205
Cac8I	GCNNGC	1 cut(s)	34
CfoI	GCGC	1 cut(s)	190
Cfr10I	RCCGGY	4 cut(s)	32, 105, 109, 276
Cfr13I	GGNCC	1 cut(s)	274
ClaI	ATCGAT	3 cut(s)	228, 232, 303
CviAII	CATG	1 cut(s)	191
CviJI	RGCY	8 cut(s)	32, 86, 109, 133, 247, 276, 359, 391
CviKI_1	RGCY	8 cut(s)	32, 86, 109, 133, 247, 276, 359, 391
DdeI	CTNAG	5 cut(s)	28, 69, 136, 143, 387
DpnI	GATC	2 cut(s)	231, 302
DpnII	GATC	2 cut(s)	229, 300
DraIII	CACNNNGTG	1 cut(s)	260
EaeI	YGGCCR	1 cut(s)	107
EagI	CGGCCG	1 cut(s)	107
EciI	GGCGGA	1 cut(s)	51
Ecl136II	GAGCTC	1 cut(s)	133
EclXI	CGGCCG	1 cut(s)	107
Eco130I	CCWWGG	1 cut(s)	295
Eco24I	GRGCYC	1 cut(s)	135
Eco32I	GATATC	1 cut(s)	160
Eco52I	CGGCCG	1 cut(s)	107
Eco53kI	GAGCTC	1 cut(s)	133
EcoICRI	GAGCTC	1 cut(s)	133
EcoRV	GATATC	1 cut(s)	160
EcoT14I	CCWWGG	1 cut(s)	295
EcoT38I	GRGCYC	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	295
Esp3I	CGTCTC	1 cut(s)	70
FaeI	CATG	1 cut(s)	194
FaiI	YATR	9 cut(s)	121, 123, 192, 225, 238, 267, 308, 310, 318
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	41
FatI	CATG	1 cut(s)	190
FauI	CCCGC	1 cut(s)	276
FauNDI	CATATG	1 cut(s)	121
FokI	GGATG	1 cut(s)	28
FriOI	GRGCYC	1 cut(s)	135
FspBI	CTAG	1 cut(s)	393
GlaI	GCGC	1 cut(s)	189
GsuI	CTGGAG	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	109, 276
HapII	CCGG	5 cut(s)	33, 106, 110, 277, 374
HhaI	GCGC	1 cut(s)	190
Hin1II	CATG	1 cut(s)	194
Hin6I	GCGC	1 cut(s)	188
HinP1I	GCGC	1 cut(s)	188
HincII	GTYRAC	1 cut(s)	384
HindII	GTYRAC	1 cut(s)	384
HinfI	GANTC	1 cut(s)	362
HpaII	CCGG	5 cut(s)	33, 106, 110, 277, 374
HphI	GGTGA	2 cut(s)	112, 298
Hpy166II	GTNNAC	2 cut(s)	103, 384
Hpy188I	TCNGA	1 cut(s)	81
Hpy188III	TCNNGA	1 cut(s)	128
Hpy8I	GTNNAC	2 cut(s)	103, 384
HpyAV	CCTTC	2 cut(s)	170, 316
HpyCH4V	TGCA	1 cut(s)	170
HpyF3I	CTNAG	5 cut(s)	28, 69, 136, 143, 387
Hsp92II	CATG	1 cut(s)	194
HspAI	GCGC	1 cut(s)	188
KroI	GCCGGC	1 cut(s)	32
KroNI	GCCGGC	1 cut(s)	34
Kzo9I	GATC	2 cut(s)	229, 300
LmnI	GCTCC	2 cut(s)	130, 252
LpnPI	CCDG	9 cut(s)	46, 108, 113, 119, 123, 193, 257, 290, 387
MaeI	CTAG	1 cut(s)	393
MaeIII	GTNAC	1 cut(s)	146
MalI	GATC	2 cut(s)	231, 302
MboI	GATC	2 cut(s)	229, 300
MboII	GAAGA	1 cut(s)	361
MhlI	GDGCHC	3 cut(s)	135, 207, 295
MnlI	CCTC	3 cut(s)	67, 69, 264
MroNI	GCCGGC	1 cut(s)	32
MseI	TTAA	1 cut(s)	153
MspCI	CTTAAG	1 cut(s)	152
MspI	CCGG	5 cut(s)	33, 106, 110, 277, 374
MspR9I	CCNGG	1 cut(s)	375
NaeI	GCCGGC	1 cut(s)	34
NciI	CCSGG	1 cut(s)	375
NdeI	CATATG	1 cut(s)	121
NdeII	GATC	2 cut(s)	229, 300
NgoMIV	GCCGGC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	194
NlaIV	GGNNCC	1 cut(s)	275
PcsI	WCGNNNNNNNCGW	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	34
PfeI	GAWTC	1 cut(s)	362
PflMI	CCANNNNNTGG	1 cut(s)	22
Ple19I	CGATCG	1 cut(s)	232
Psp124BI	GAGCTC	1 cut(s)	135
PspN4I	GGNNCC	1 cut(s)	275
PspPI	GGNCC	1 cut(s)	274
PvuI	CGATCG	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	135
SaqAI	TTAA	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	229, 300
Sau96I	GGNCC	1 cut(s)	274
ScrFI	CCNGG	1 cut(s)	375
SduI	GDGCHC	3 cut(s)	135, 207, 295
SetI	ASST	5 cut(s)	78, 88, 135, 153, 249
SmlI	CTYRAG	1 cut(s)	152
SmoI	CTYRAG	1 cut(s)	152
SsiI	CCGC	2 cut(s)	36, 283
SspMI	CTAG	1 cut(s)	393
SstI	GAGCTC	1 cut(s)	135
StyD4I	CCNGG	1 cut(s)	373
StyI	CCWWGG	1 cut(s)	295
TaqI	TCGA	4 cut(s)	228, 232, 303, 400
TfiI	GAWTC	1 cut(s)	362
Tru1I	TTAA	1 cut(s)	153
Tru9I	TTAA	1 cut(s)	153
TscAI	CASTG	1 cut(s)	212
TspGWI	ACGGA	1 cut(s)	361
TspRI	CASTG	1 cut(s)	212
Van91I	CCANNNNNTGG	1 cut(s)	22
Vha464I	CTTAAG	1 cut(s)	152
XspI	CTAG	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.