Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0018866.1

Orthogroup ID

OG0006736

Physical Location & Seq

Genomic Coordinates Reverse (-)

1626 .. 2089

Gene Structure 464 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0018866.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atggatttccaagtggtggtcttagccggcggaacatccaagaaactcgtccctctcgtctccaaggtacgccctcctccttttccattctattcctcgcgacatacgaaaccaattttcttactcttgctcacacaatggcaggaggttccgaaagctctgcttccggtggcgaaccgcccggttatctcgtacgttctggagctcttagaactcagtaaccttaaggatatcattgttgcggttgaaggaaaagaagcgtatgattgcgttgagcactggattgtagaagcttatatcgatcggttacgtatccaggtatcgattcaaggctctggtttagcattccagtattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010001 GO:0010033 GO:0010243 GO:0010467 GO:0014003 GO:0019538 GO:0019899 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0021782 GO:0022008 GO:0023052 GO:0030154 GO:0030900 GO:0032501 GO:0032502 GO:0032991 GO:0034284 GO:0034641 GO:0034645 GO:0042063 GO:0042221 GO:0043043 GO:0043170 GO:0043434 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051020 GO:0051716 GO:0060322 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep NTP_transf_3 NTP_transferase

Protein Analysis

118

Amino Acids

13.35

Weight (kDa)

7.85

Isoelectric Point (pI)

31.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19485
fragaria_vesca	FvH4_1g25390
malus_domestica	MD03G1163000.v1.1
prunus_persica	Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1
pyrus_communis	pycom12561g00150 pycom5153684g00170
rosa_chinensis	RchiOBHm_Chr2g0123421
rosa_laevigata	RLG00000018753 RLG00000036275
rosa_multiflora	Rmu_sc0018866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093620 Rroxscaffold_2G00120680 Rroxscaffold_5G00351380
rosa_rugosa	Rorug02G0245500 Rorug02G0245500
rosa_samantha	Rh2AG304300 Rh2BG312300 Rh2CG290800 Rh2DG328300 Rh5AG454400
rosa_wichuraiana	Rw2G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AccII	CGCG	1 cut(s)	100
AciI	CCGC	3 cut(s)	30, 178, 242
AfaI	GTAC	2 cut(s)	69, 194
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	2 cut(s)	248, 329
AjnI	CCWGG	1 cut(s)	315
AluBI	AGCT	3 cut(s)	158, 205, 293
AluI	AGCT	3 cut(s)	158, 205, 293
Alw21I	GWGCWC	2 cut(s)	207, 279
Alw26I	GTCTC	1 cut(s)	64
AsuC2I	CCSGG	1 cut(s)	182
BanII	GRGCYC	1 cut(s)	207
Bbv12I	GWGCWC	2 cut(s)	207, 279
BcgI	CGANNNNNNTGC	2 cut(s)	142, 176
BciT130I	CCWGG	1 cut(s)	317
BciVI	GTATCC	1 cut(s)	323
BcnI	CCSGG	1 cut(s)	182
BcoDI	GTCTC	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	323
Bme1390I	CCNGG	2 cut(s)	182, 317
BmiI	GGNNCC	1 cut(s)	150
BmrFI	CCNGG	2 cut(s)	182, 317
BpmI	CTGGAG	1 cut(s)	221
BpuMI	CCSGG	1 cut(s)	182
Bsa29I	ATCGAT	2 cut(s)	300, 323
BsaAI	YACGTR	1 cut(s)	311
BsaJI	CCNNGG	1 cut(s)	63
BsaWI	WCCGGW	1 cut(s)	166
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	284, 349
BseBI	CCWGG	1 cut(s)	317
BseCI	ATCGAT	2 cut(s)	300, 323
BseDI	CCNNGG	1 cut(s)	63
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMII	CTCAG	1 cut(s)	229
BseNI	ACTGG	2 cut(s)	284, 349
BseRI	GAGGAG	1 cut(s)	66
Bsh1236I	CGCG	1 cut(s)	100
Bsh1285I	CGRYCG	1 cut(s)	304
BshVI	ATCGAT	2 cut(s)	300, 323
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	2 cut(s)	207, 279
BsiSI	CCGG	3 cut(s)	27, 167, 182
BsiWI	CGTACG	1 cut(s)	192
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	35
BsmI	GAATGC	1 cut(s)	344
Bsp1286I	GDGCHC	2 cut(s)	207, 279
Bsp143I	GATC	1 cut(s)	301
Bsp68I	TCGCGA	1 cut(s)	100
BspACI	CCGC	3 cut(s)	30, 178, 242
BspCNI	CTCAG	1 cut(s)	228
BspDI	ATCGAT	2 cut(s)	300, 323
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	150
BspTI	CTTAAG	1 cut(s)	224
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	284, 349
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	1 cut(s)	301
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	317
BstAFI	CTTAAG	1 cut(s)	224
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	3 cut(s)	22, 208, 215
BstF5I	GGATG	1 cut(s)	35
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	304
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	301
BstMCI	CGRYCG	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	317
BstSCI	CCNGG	2 cut(s)	180, 315
BstSNI	TACGTA	1 cut(s)	311
BstUI	CGCG	1 cut(s)	100
Bsu15I	ATCGAT	2 cut(s)	300, 323
BsuI	GTATCC	1 cut(s)	323
BsuTUI	ATCGAT	2 cut(s)	300, 323
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	277
BtuMI	TCGCGA	1 cut(s)	100
Cac8I	GCNNGC	1 cut(s)	28
Cfr10I	RCCGGY	1 cut(s)	26
ClaI	ATCGAT	2 cut(s)	300, 323
Csp6I	GTAC	2 cut(s)	68, 193
CviJI	RGCY	5 cut(s)	26, 158, 205, 293, 333
CviKI_1	RGCY	5 cut(s)	26, 158, 205, 293, 333
CviQI	GTAC	2 cut(s)	68, 193
DdeI	CTNAG	3 cut(s)	22, 208, 215
DpnI	GATC	1 cut(s)	303
DpnII	GATC	1 cut(s)	301
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	205
Eco105I	TACGTA	1 cut(s)	311
Eco130I	CCWWGG	1 cut(s)	63
Eco24I	GRGCYC	1 cut(s)	207
Eco32I	GATATC	1 cut(s)	232
Eco53kI	GAGCTC	1 cut(s)	205
EcoICRI	GAGCTC	1 cut(s)	205
EcoRII	CCWGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	232
EcoT14I	CCWWGG	1 cut(s)	63
EcoT38I	GRGCYC	1 cut(s)	207
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	64
FaiI	YATR	3 cut(s)	105, 264, 297
FalI	AAGNNNNNCTT	2 cut(s)	147, 179
FaqI	GGGAC	1 cut(s)	35
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	207
GsuI	CTGGAG	1 cut(s)	221
HapII	CCGG	3 cut(s)	27, 167, 182
HindIII	AAGCTT	1 cut(s)	291
HinfI	GANTC	1 cut(s)	325
HpaII	CCGG	3 cut(s)	27, 167, 182
Hpy188I	TCNGA	1 cut(s)	153
Hpy188III	TCNNGA	2 cut(s)	99, 200
HpyAV	CCTTC	1 cut(s)	242
HpyCH4IV	ACGT	2 cut(s)	195, 310
HpyF3I	CTNAG	3 cut(s)	22, 208, 215
HpySE526I	ACGT	2 cut(s)	195, 310
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	301
LmnI	GCTCC	1 cut(s)	202
LpnPI	CCDG	9 cut(s)	40, 128, 180, 185, 195, 265, 302, 321, 329
MaeII	ACGT	2 cut(s)	195, 310
MaeIII	GTNAC	2 cut(s)	218, 306
MalI	GATC	1 cut(s)	303
MboI	GATC	1 cut(s)	301
MhlI	GDGCHC	2 cut(s)	207, 279
MluCI	AATT	1 cut(s)	114
MnlI	CCTC	5 cut(s)	63, 84, 87, 106, 139
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	1 cut(s)	225
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	3 cut(s)	27, 167, 182
MspR9I	CCNGG	2 cut(s)	182, 317
Mva1269I	GAATGC	1 cut(s)	344
MvaI	CCWGG	1 cut(s)	317
MvnI	CGCG	1 cut(s)	100
NaeI	GCCGGC	1 cut(s)	28
NciI	CCSGG	1 cut(s)	182
NdeII	GATC	1 cut(s)	301
NgoMIV	GCCGGC	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	150
NruI	TCGCGA	1 cut(s)	100
PcsI	WCGNNNNNNNCGW	2 cut(s)	54, 104
PctI	GAATGC	1 cut(s)	344
PdiI	GCCGGC	1 cut(s)	28
PfeI	GAWTC	1 cut(s)	325
Pfl23II	CGTACG	1 cut(s)	192
PflMI	CCANNNNNTGG	1 cut(s)	16
Ple19I	CGATCG	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	311
Psp124BI	GAGCTC	1 cut(s)	207
Psp6I	CCWGG	1 cut(s)	315
PspGI	CCWGG	1 cut(s)	315
PspLI	CGTACG	1 cut(s)	192
PspN4I	GGNNCC	1 cut(s)	150
PvuI	CGATCG	1 cut(s)	304
RruI	TCGCGA	1 cut(s)	100
RsaI	GTAC	2 cut(s)	69, 194
RsaNI	GTAC	2 cut(s)	68, 193
SacI	GAGCTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	225
Sau3AI	GATC	1 cut(s)	301
ScrFI	CCNGG	2 cut(s)	182, 317
SduI	GDGCHC	2 cut(s)	207, 279
SetI	ASST	9 cut(s)	69, 150, 160, 198, 207, 225, 295, 313, 321
SmlI	CTYRAG	1 cut(s)	224
SmoI	CTYRAG	1 cut(s)	224
SnaBI	TACGTA	1 cut(s)	311
Sse9I	AATT	1 cut(s)	114
SsiI	CCGC	3 cut(s)	30, 178, 242
SstI	GAGCTC	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	180, 315
StyI	CCWWGG	1 cut(s)	63
TaiI	ACGT	2 cut(s)	198, 313
TaqI	TCGA	2 cut(s)	300, 323
TasI	AATT	1 cut(s)	114
TfiI	GAWTC	1 cut(s)	325
Tru1I	TTAA	1 cut(s)	225
Tru9I	TTAA	1 cut(s)	225
TscAI	CASTG	1 cut(s)	284
TspRI	CASTG	1 cut(s)	284
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.