Rroxscaffold_2G00093620

Translation initiation factor eIF-2B subunit

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
14949069 .. 14949281
213 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_2G00093620.1

Sequence Viewer

Length: 213 bp
ATGGATTTCCAAGTGGTGGTCTTAGCCGGCGGAACATCCAAGAAACTCTTCACTTTCGTCTCTAAGGAGGTTCCAAAAGCTTTGCTTCCGGTGGCGAACCGGCGGGTTATCTCGTATGTTACGGAGCTCTTAGAACTCAATAACCTTTTAAGGATATCATTGTTGAGGTTGAAGGAAAAGAAGCGCATGATTGCGTTGAGCATTGGATTGTAG

Protein Analysis

70

Amino Acids

7.88

Weight (kDa)

10.44

Isoelectric Point (pI)

35.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 16
AciI CCGC 2 cut(s) 30, 103
AfiI CCNNNNNNNGG 1 cut(s) 16
AgsI TTSAA 1 cut(s) 172
AjuI GAANNNNNNNTTGG 2 cut(s) 32, 64
AluBI AGCT 2 cut(s) 80, 127
AluI AGCT 2 cut(s) 80, 127
Alw21I GWGCWC 1 cut(s) 129
Alw26I GTCTC 1 cut(s) 64
Asp700I GAANNNNTTC 1 cut(s) 47
AspLEI GCGC 1 cut(s) 186
BanII GRGCYC 1 cut(s) 129
Bbv12I GWGCWC 1 cut(s) 129
BcoDI GTCTC 1 cut(s) 64
BmiI GGNNCC 1 cut(s) 72
BsaWI WCCGGW 1 cut(s) 88
Bsc4I CCNNNNNNNGG 1 cut(s) 16
Bse118I RCCGGY 2 cut(s) 26, 99
BseGI GGATG 1 cut(s) 35
BseLI CCNNNNNNNGG 1 cut(s) 16
BsiHKAI GWGCWC 1 cut(s) 129
BsiSI CCGG 3 cut(s) 27, 89, 100
BslI CCNNNNNNNGG 1 cut(s) 16
BsmAI GTCTC 1 cut(s) 64
BsmBI CGTCTC 1 cut(s) 64
Bsp1286I GDGCHC 1 cut(s) 129
BspACI CCGC 2 cut(s) 30, 103
BspLI GGNNCC 1 cut(s) 72
BsrFI RCCGGY 2 cut(s) 26, 99
BssAI RCCGGY 2 cut(s) 26, 99
Bst6I CTCTTC 1 cut(s) 53
BstC8I GCNNGC 1 cut(s) 28
BstDEI CTNAG 3 cut(s) 22, 63, 130
BstF5I GGATG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 186
BstMAI GTCTC 1 cut(s) 64
BtsCI GGATG 1 cut(s) 35
Cac8I GCNNGC 1 cut(s) 28
CfoI GCGC 1 cut(s) 186
Cfr10I RCCGGY 2 cut(s) 26, 99
CviAII CATG 1 cut(s) 187
CviJI RGCY 3 cut(s) 26, 80, 127
CviKI_1 RGCY 3 cut(s) 26, 80, 127
DdeI CTNAG 3 cut(s) 22, 63, 130
Eam1104I CTCTTC 1 cut(s) 53
EarI CTCTTC 1 cut(s) 53
EciI GGCGGA 1 cut(s) 45
Ecl136II GAGCTC 1 cut(s) 127
Eco24I GRGCYC 1 cut(s) 129
Eco32I GATATC 1 cut(s) 156
Eco53kI GAGCTC 1 cut(s) 127
EcoICRI GAGCTC 1 cut(s) 127
EcoRV GATATC 1 cut(s) 156
EcoT38I GRGCYC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 64
FaeI CATG 1 cut(s) 190
FaiI YATR 2 cut(s) 117, 188
FalI AAGNNNNNCTT 4 cut(s) 32, 64, 69, 101
FatI CATG 1 cut(s) 186
FauI CCCGC 1 cut(s) 96
FokI GGATG 1 cut(s) 22
FriOI GRGCYC 1 cut(s) 129
GlaI GCGC 1 cut(s) 185
HapII CCGG 3 cut(s) 27, 89, 100
HhaI GCGC 1 cut(s) 186
Hin1II CATG 1 cut(s) 190
Hin6I GCGC 1 cut(s) 184
HinP1I GCGC 1 cut(s) 184
HindIII AAGCTT 1 cut(s) 78
HpaII CCGG 3 cut(s) 27, 89, 100
HpyAV CCTTC 1 cut(s) 166
HpyF3I CTNAG 3 cut(s) 22, 63, 130
Hsp92II CATG 1 cut(s) 190
HspAI GCGC 1 cut(s) 184
KroI GCCGGC 1 cut(s) 26
KroNI GCCGGC 1 cut(s) 28
LmnI GCTCC 1 cut(s) 124
LpnPI CCDG 3 cut(s) 40, 102, 113
MaeIII GTNAC 1 cut(s) 118
MboII GAAGA 1 cut(s) 40
MhlI GDGCHC 1 cut(s) 129
MnlI CCTC 2 cut(s) 61, 159
MroNI GCCGGC 1 cut(s) 26
MroXI GAANNNNTTC 1 cut(s) 47
MseI TTAA 1 cut(s) 149
MspI CCGG 3 cut(s) 27, 89, 100
NaeI GCCGGC 1 cut(s) 28
NgoMIV GCCGGC 1 cut(s) 26
NlaIII CATG 1 cut(s) 190
NlaIV GGNNCC 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 28
PdmI GAANNNNTTC 1 cut(s) 47
PflMI CCANNNNNTGG 1 cut(s) 16
Psp124BI GAGCTC 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 72
SacI GAGCTC 1 cut(s) 129
SaqAI TTAA 1 cut(s) 149
SduI GDGCHC 1 cut(s) 129
SetI ASST 5 cut(s) 72, 82, 129, 147, 170
SgeI CNNG 8 cut(s) 23, 39, 52, 101, 112, 116, 124, 199
SsiI CCGC 2 cut(s) 30, 103
SstI GAGCTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TspGWI ACGGA 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 16
XmnI GAANNNNTTC 1 cut(s) 47
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.