Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0006736

Physical Location & Seq

Genomic Coordinates Forward (+)

27574771 .. 27585739

Gene Structure 10969 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGACTCCTTGGTGCGCTTGGCTTCTTCAAGCTCGCATTTCGACCTCAAGCTCGGACGTCGGCTCCTCGATTCGCTTCCTCGGGCCGACCACTCTTCACTCTCCCCGAGACTTCTCGGAGGCGAAGTCGTGAATCAAGTTCATGAGGTGCTTCGGGGTCGCTTCCCGCCATCACCGACCGACTTGACGGTTTGTGCTCTTAACGCGTCGGAGAAGATCGAAGCTGAAACAATTCCACGAAAATCAAACAAGGTTACAAAGAAAGAGGTTGAATTACACCGTGAGATGGAGATGGGGATGGAGCCGGTGGAACATCCAAGAAACTCGTCCCTCTCGTCTCTAAGGAGGTTCCGAAAGCTCGTTTCCGGTGGCGAACCGGCCGGTTATCTCGTACGTTCGGAGCTCTTAGAACTCAGTAACCTTAAGGATATCATTGTTGCGGTTGAAGGAAAAGAAGCGTATGATTGCGTTGAGCACCGGGTTGTAGAAGCTTATATCGATCGATTACGTATCCAGGTTGAAAGAGTCCACGATGATGTTGGAACAGTGAAACCTGGACATTACAATAGAATTGGGTGGATCCCACAAGACAGTTTTTGCCGTACATCGCAACGGGAGCGGAACTTGAGAAAGATATGCGAATTCGAGAAGATTATACTTTGTGCGGTTGATCAGATGGAAATTCGATCTGATCTCATGGATGCTCATTTATATGCATTCAAAAGGTACGTTCTGCAGGAAGTTCTAAACCAAAAGGATAAATTTCAAAGTTTAAAGCGGGATGTATTACCTTACCTTGTTCGTACACGGTGGCTTCGAGGTGGTGTTAAATGGTGTACCACAACCAGAAGAAAATGGAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010001 GO:0010033 GO:0010243 GO:0010467 GO:0014003 GO:0019538 GO:0019899 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0021782 GO:0022008 GO:0023052 GO:0030154 GO:0030900 GO:0032501 GO:0032502 GO:0032991 GO:0034284 GO:0034641 GO:0034645 GO:0042063 GO:0042221 GO:0043043 GO:0043170 GO:0043434 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051020 GO:0051716 GO:0060322 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep NTP_transf_3 NTP_transferase

Protein Analysis

287

Amino Acids

33.23

Weight (kDa)

9.35

Isoelectric Point (pI)

47.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19485
fragaria_vesca	FvH4_1g25390
malus_domestica	MD03G1163000.v1.1
prunus_persica	Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1
pyrus_communis	pycom12561g00150 pycom5153684g00170
rosa_chinensis	RchiOBHm_Chr2g0123421
rosa_laevigata	RLG00000018753 RLG00000036275
rosa_multiflora	Rmu_sc0018866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093620 Rroxscaffold_2G00120680 Rroxscaffold_5G00351380
rosa_rugosa	Rorug02G0245500 Rorug02G0245500
rosa_samantha	Rh2AG304300 Rh2BG312300 Rh2CG290800 Rh2DG328300 Rh5AG454400
rosa_wichuraiana	Rw2G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	61
AccBSI	CCGCTC	1 cut(s)	619
AccII	CGCG	1 cut(s)	206
AciI	CCGC	5 cut(s)	167, 440, 619, 665, 778
AclWI	GGATC	2 cut(s)	574, 587
AcoI	YGGCCR	1 cut(s)	378
AcsI	RAATTY	3 cut(s)	641, 681, 761
AcyI	GRCGYC	1 cut(s)	58
AfaI	GTAC	5 cut(s)	393, 604, 728, 805, 838
AfiI	CCNNNNNNNGG	1 cut(s)	286
AflII	CTTAAG	1 cut(s)	422
AflIII	ACRYGT	1 cut(s)	204
AgsI	TTSAA	6 cut(s)	30, 272, 446, 521, 721, 767
AjnI	CCWGG	2 cut(s)	513, 553
AluBI	AGCT	6 cut(s)	33, 52, 224, 358, 403, 491
AluI	AGCT	6 cut(s)	33, 52, 224, 358, 403, 491
Alw21I	GWGCWC	3 cut(s)	199, 405, 477
Alw26I	GTCTC	2 cut(s)	103, 342
AlwI	GGATC	2 cut(s)	574, 587
Ama87I	CYCGRG	2 cut(s)	81, 106
AoxI	GGCC	2 cut(s)	84, 378
ApoI	RAATTY	3 cut(s)	641, 681, 761
Asp700I	GAANNNNTTC	1 cut(s)	231
AspLEI	GCGC	1 cut(s)	18
AspS9I	GGNCC	1 cut(s)	84
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	165
AvaI	CYCGRG	2 cut(s)	81, 106
BamHI	GGATCC	1 cut(s)	579
BanII	GRGCYC	1 cut(s)	405
Bbv12I	GWGCWC	3 cut(s)	199, 405, 477
BccI	CCATC	5 cut(s)	178, 280, 286, 292, 670
BceAI	ACGGC	1 cut(s)	585
BciT130I	CCWGG	2 cut(s)	515, 555
BciVI	GTATCC	1 cut(s)	521
BclI	TGATCA	1 cut(s)	670
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	2 cut(s)	103, 342
BfmI	CTRYAG	1 cut(s)	734
BfrI	CTTAAG	1 cut(s)	422
BfuI	GTATCC	1 cut(s)	521
Bme1390I	CCNGG	3 cut(s)	479, 515, 555
BmeT110I	CYCGRG	2 cut(s)	81, 106
BmgT120I	GGNCC	1 cut(s)	84
BmiI	GGNNCC	4 cut(s)	65, 303, 350, 581
BmrFI	CCNGG	3 cut(s)	479, 515, 555
BmsI	GCATC	1 cut(s)	691
BpuEI	CTTGAG	2 cut(s)	32, 646
BpuMI	CCSGG	1 cut(s)	479
Bsa29I	ATCGAT	2 cut(s)	498, 502
BsaAI	YACGTR	1 cut(s)	509
BsaHI	GRCGYC	1 cut(s)	58
BsaJI	CCNNGG	2 cut(s)	9, 80
BsaWI	WCCGGW	1 cut(s)	365
BsaXI	ACNNNNNCTCC	4 cut(s)	48, 78, 111, 141
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse118I	RCCGGY	3 cut(s)	304, 376, 380
BseBI	CCWGG	2 cut(s)	515, 555
BseCI	ATCGAT	2 cut(s)	498, 502
BseDI	CCNNGG	2 cut(s)	9, 80
BseGI	GGATG	4 cut(s)	303, 313, 706, 787
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMII	CTCAG	1 cut(s)	427
BseRI	GAGGAG	1 cut(s)	56
BseX3I	CGGCCG	1 cut(s)	378
Bsh1236I	CGCG	1 cut(s)	206
Bsh1285I	CGRYCG	3 cut(s)	180, 381, 502
BshFI	GGCC	2 cut(s)	86, 380
BshVI	ATCGAT	2 cut(s)	498, 502
BsiEI	CGRYCG	3 cut(s)	180, 381, 502
BsiHKAI	GWGCWC	3 cut(s)	199, 405, 477
BsiHKCI	CYCGRG	2 cut(s)	81, 106
BsiSI	CCGG	5 cut(s)	305, 366, 377, 381, 478
BsiWI	CGTACG	1 cut(s)	391
BslFI	GGGAC	1 cut(s)	313
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	103, 342
BsmBI	CGTCTC	1 cut(s)	342
BsmFI	GGGAC	1 cut(s)	313
BsmI	GAATGC	1 cut(s)	716
BsnI	GGCC	2 cut(s)	86, 380
BsoBI	CYCGRG	2 cut(s)	81, 106
Bsp1286I	GDGCHC	3 cut(s)	199, 405, 477
Bsp143I	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
BspACI	CCGC	5 cut(s)	167, 440, 619, 665, 778
BspANI	GGCC	2 cut(s)	86, 380
BspCNI	CTCAG	1 cut(s)	426
BspDI	ATCGAT	2 cut(s)	498, 502
BspFNI	CGCG	1 cut(s)	206
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	4 cut(s)	65, 303, 350, 581
BspMAI	CTGCAG	1 cut(s)	738
BspPI	GGATC	2 cut(s)	574, 587
BspTI	CTTAAG	1 cut(s)	422
BsrBI	CCGCTC	1 cut(s)	619
BsrFI	RCCGGY	3 cut(s)	304, 376, 380
BssAI	RCCGGY	3 cut(s)	304, 376, 380
BssECI	CCNNGG	2 cut(s)	9, 80
BssMI	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
BssNI	GRCGYC	1 cut(s)	58
BssT1I	CCWWGG	1 cut(s)	9
Bst2UI	CCWGG	2 cut(s)	515, 555
Bst4CI	ACNGT	5 cut(s)	190, 281, 547, 593, 810
Bst6I	CTCTTC	1 cut(s)	100
BstACI	GRCGYC	1 cut(s)	58
BstAFI	CTTAAG	1 cut(s)	422
BstBAI	YACGTR	1 cut(s)	509
BstC8I	GCNNGC	1 cut(s)	35
BstDEI	CTNAG	3 cut(s)	341, 406, 413
BstF5I	GGATG	4 cut(s)	303, 313, 706, 787
BstFNI	CGCG	1 cut(s)	206
BstHHI	GCGC	1 cut(s)	18
BstKTI	GATC	6 cut(s)	219, 502, 582, 673, 689, 694
BstMAI	GTCTC	2 cut(s)	103, 342
BstMBI	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
BstMCI	CGRYCG	3 cut(s)	180, 381, 502
BstMWI	GCNNNNNNNGC	2 cut(s)	203, 616
BstNI	CCWGG	2 cut(s)	515, 555
BstSCI	CCNGG	3 cut(s)	477, 513, 553
BstSFI	CTRYAG	1 cut(s)	734
BstSNI	TACGTA	1 cut(s)	509
BstUI	CGCG	1 cut(s)	206
BstX2I	RGATCY	1 cut(s)	579
BstYI	RGATCY	1 cut(s)	579
BstZI	CGGCCG	1 cut(s)	378
Bsu15I	ATCGAT	2 cut(s)	498, 502
BsuI	GTATCC	1 cut(s)	521
BsuRI	GGCC	2 cut(s)	86, 380
BsuTUI	ATCGAT	2 cut(s)	498, 502
BtgZI	GCGATG	1 cut(s)	591
BtsCI	GGATG	4 cut(s)	303, 313, 706, 787
BtsIMutI	CAGTG	1 cut(s)	552
Cac8I	GCNNGC	1 cut(s)	35
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	18
Cfr10I	RCCGGY	3 cut(s)	304, 376, 380
Cfr13I	GGNCC	1 cut(s)	84
ClaI	ATCGAT	2 cut(s)	498, 502
CseI	GACGC	1 cut(s)	195
Csp6I	GTAC	5 cut(s)	392, 603, 727, 804, 837
CviAII	CATG	2 cut(s)	143, 697
CviQI	GTAC	5 cut(s)	392, 603, 727, 804, 837
DdeI	CTNAG	3 cut(s)	341, 406, 413
DpnI	GATC	6 cut(s)	218, 501, 581, 672, 688, 693
DpnII	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
DraI	TTTAAA	1 cut(s)	774
EaeI	YGGCCR	1 cut(s)	378
EagI	CGGCCG	1 cut(s)	378
Eam1104I	CTCTTC	1 cut(s)	100
EarI	CTCTTC	1 cut(s)	100
Ecl136II	GAGCTC	1 cut(s)	403
EclXI	CGGCCG	1 cut(s)	378
Eco105I	TACGTA	1 cut(s)	509
Eco130I	CCWWGG	1 cut(s)	9
Eco24I	GRGCYC	1 cut(s)	405
Eco32I	GATATC	1 cut(s)	430
Eco52I	CGGCCG	1 cut(s)	378
Eco53kI	GAGCTC	1 cut(s)	403
Eco88I	CYCGRG	2 cut(s)	81, 106
EcoICRI	GAGCTC	1 cut(s)	403
EcoRI	GAATTC	1 cut(s)	641
EcoRII	CCWGG	2 cut(s)	513, 553
EcoRV	GATATC	1 cut(s)	430
EcoT14I	CCWWGG	1 cut(s)	9
EcoT22I	ATGCAT	1 cut(s)	718
EcoT38I	GRGCYC	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	9
Esp3I	CGTCTC	1 cut(s)	342
FaeI	CATG	2 cut(s)	146, 700
FaiI	YATR	8 cut(s)	144, 462, 495, 637, 656, 698, 712, 714
FaqI	GGGAC	1 cut(s)	313
FatI	CATG	2 cut(s)	142, 696
FauI	CCCGC	2 cut(s)	174, 771
FbaI	TGATCA	1 cut(s)	670
FokI	GGATG	4 cut(s)	300, 310, 713, 794
FriOI	GRGCYC	1 cut(s)	405
GlaI	GCGC	1 cut(s)	17
HaeIII	GGCC	2 cut(s)	86, 380
HapII	CCGG	5 cut(s)	305, 366, 377, 381, 478
HgaI	GACGC	1 cut(s)	195
HhaI	GCGC	1 cut(s)	18
Hin1I	GRCGYC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	146, 700
Hin6I	GCGC	1 cut(s)	16
HinP1I	GCGC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	4 cut(s)	5, 71, 133, 525
HpaII	CCGG	5 cut(s)	305, 366, 377, 381, 478
HphI	GGTGA	1 cut(s)	165
Hpy166II	GTNNAC	3 cut(s)	529, 806, 837
Hpy188I	TCNGA	7 cut(s)	56, 119, 211, 353, 400, 675, 691
Hpy188III	TCNNGA	3 cut(s)	130, 143, 646
Hpy8I	GTNNAC	3 cut(s)	529, 806, 837
Hpy99I	CGWCG	2 cut(s)	63, 211
HpyAV	CCTTC	1 cut(s)	440
HpyCH4III	ACNGT	5 cut(s)	190, 281, 547, 593, 810
HpyCH4IV	ACGT	4 cut(s)	58, 394, 508, 729
HpyCH4V	TGCA	2 cut(s)	716, 736
HpyF10VI	GCNNNNNNNGC	2 cut(s)	203, 616
HpyF3I	CTNAG	3 cut(s)	341, 406, 413
HpySE526I	ACGT	4 cut(s)	58, 394, 508, 729
Hsp92I	GRCGYC	1 cut(s)	58
Hsp92II	CATG	2 cut(s)	146, 700
HspAI	GCGC	1 cut(s)	16
Ksp22I	TGATCA	1 cut(s)	670
Kzo9I	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
LmnI	GCTCC	4 cut(s)	69, 301, 400, 616
LweI	GCATC	1 cut(s)	691
MaeII	ACGT	4 cut(s)	58, 394, 508, 729
MaeIII	GTNAC	2 cut(s)	253, 416
MalI	GATC	6 cut(s)	218, 501, 581, 672, 688, 693
MbiI	CCGCTC	1 cut(s)	619
MboI	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
MboII	GAAGA	5 cut(s)	18, 87, 226, 661, 861
MflI	RGATCY	1 cut(s)	579
MhlI	GDGCHC	3 cut(s)	199, 405, 477
MluCI	AATT	6 cut(s)	231, 272, 570, 641, 681, 761
MluI	ACGCGT	1 cut(s)	204
MlyI	GAGTC	1 cut(s)	534
MmeI	TCCRAC	2 cut(s)	189, 520
MnlI	CCTC	9 cut(s)	56, 77, 90, 113, 139, 259, 339, 341, 812
Mph1103I	ATGCAT	1 cut(s)	718
MroXI	GAANNNNTTC	1 cut(s)	231
MseI	TTAA	4 cut(s)	201, 423, 773, 828
MslI	CAYNNNNRTG	2 cut(s)	534, 711
MspCI	CTTAAG	1 cut(s)	422
MspI	CCGG	5 cut(s)	305, 366, 377, 381, 478
MspR9I	CCNGG	3 cut(s)	479, 515, 555
Mva1269I	GAATGC	1 cut(s)	716
MvaI	CCWGG	2 cut(s)	515, 555
MvnI	CGCG	1 cut(s)	206
MwoI	GCNNNNNNNGC	2 cut(s)	203, 616
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
NlaIII	CATG	2 cut(s)	146, 700
NlaIV	GGNNCC	4 cut(s)	65, 303, 350, 581
NsiI	ATGCAT	1 cut(s)	718
PagI	TCATGA	1 cut(s)	142
PcsI	WCGNNNNNNNCGW	2 cut(s)	332, 814
PctI	GAATGC	1 cut(s)	716
PdmI	GAANNNNTTC	1 cut(s)	231
PfeI	GAWTC	2 cut(s)	71, 133
Pfl23II	CGTACG	1 cut(s)	391
Ple19I	CGATCG	1 cut(s)	502
PleI	GAGTC	1 cut(s)	533
PpsI	GAGTC	1 cut(s)	533
Ppu21I	YACGTR	1 cut(s)	509
Psp124BI	GAGCTC	1 cut(s)	405
Psp6I	CCWGG	2 cut(s)	513, 553
PspGI	CCWGG	2 cut(s)	513, 553
PspLI	CGTACG	1 cut(s)	391
PspN4I	GGNNCC	4 cut(s)	65, 303, 350, 581
PspPI	GGNCC	1 cut(s)	84
PstI	CTGCAG	1 cut(s)	738
PsuI	RGATCY	1 cut(s)	579
PvuI	CGATCG	1 cut(s)	502
RsaI	GTAC	5 cut(s)	393, 604, 728, 805, 838
RsaNI	GTAC	5 cut(s)	392, 603, 727, 804, 837
RseI	CAYNNNNRTG	2 cut(s)	534, 711
SacI	GAGCTC	1 cut(s)	405
SaqAI	TTAA	4 cut(s)	201, 423, 773, 828
Sau3AI	GATC	6 cut(s)	216, 499, 579, 670, 686, 691
Sau96I	GGNCC	1 cut(s)	84
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	3 cut(s)	479, 515, 555
SduI	GDGCHC	3 cut(s)	199, 405, 477
SfaNI	GCATC	1 cut(s)	691
SfcI	CTRYAG	1 cut(s)	734
SmiMI	CAYNNNNRTG	2 cut(s)	534, 711
SmlI	CTYRAG	3 cut(s)	47, 422, 625
SmoI	CTYRAG	3 cut(s)	47, 422, 625
SnaBI	TACGTA	1 cut(s)	509
Sse9I	AATT	6 cut(s)	231, 272, 570, 641, 681, 761
SsiI	CCGC	5 cut(s)	167, 440, 619, 665, 778
SstI	GAGCTC	1 cut(s)	405
StyD4I	CCNGG	3 cut(s)	477, 513, 553
StyI	CCWWGG	1 cut(s)	9
TaaI	ACNGT	5 cut(s)	190, 281, 547, 593, 810
TaiI	ACGT	4 cut(s)	61, 397, 511, 732
TaqI	TCGA	8 cut(s)	42, 69, 219, 498, 502, 645, 685, 817
TaqII	GACCGA	1 cut(s)	194
TasI	AATT	6 cut(s)	231, 272, 570, 641, 681, 761
TfiI	GAWTC	2 cut(s)	71, 133
Tru1I	TTAA	4 cut(s)	201, 423, 773, 828
Tru9I	TTAA	4 cut(s)	201, 423, 773, 828
TscAI	CASTG	1 cut(s)	552
TspDTI	ATGAA	1 cut(s)	131
TspRI	CASTG	1 cut(s)	552
Vha464I	CTTAAG	1 cut(s)	422
XapI	RAATTY	3 cut(s)	641, 681, 761
XcmI	CCANNNNNNNNNTGG	1 cut(s)	536
XmnI	GAANNNNTTC	1 cut(s)	231
ZraI	GACGTC	1 cut(s)	59
Zsp2I	ATGCAT	1 cut(s)	718

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.