Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006736

Physical Location & Seq

Genomic Coordinates Reverse (-)

77928438 .. 77928770

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG454400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGGATTTCCAAGTGGTGGTCTTAGCCGGCGGAACATCCAAGAAACTCGTCGCTTTCGTCTCTAAGGAGGTTCGGAAAGCTCTGCTTCCGGTGGCGAACCGGCCAGTCATCTCGTATGTTCTGGAGCTCTTAGAACTCAGTAACCTTAAGGATATCATTGTTGCGGTTGAAGGAAGAGAAGCGCATGATTGCGTTGAGCACTGGATTGTAGAAGCTTATATCGATCGATTATGTATCCAGGTTGAAAGAGTCCCTGATGATGTTGGAACATTGCAGATTTCCTTAGAGATTGACTCCTGCTTCTTGGGAATTTTCAATCTCATGGTCAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002253 GO:0002376 GO:0002429 GO:0002682 GO:0002684 GO:0002757 GO:0002764 GO:0002768 GO:0003674 GO:0005085 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005851 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0006950 GO:0007154 GO:0007165 GO:0007166 GO:0007275 GO:0007399 GO:0007417 GO:0007420 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009266 GO:0009408 GO:0009628 GO:0009719 GO:0009725 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0010001 GO:0010033 GO:0010243 GO:0010467 GO:0014003 GO:0019538 GO:0019899 GO:0021537 GO:0021543 GO:0021761 GO:0021766 GO:0021782 GO:0022008 GO:0023052 GO:0030154 GO:0030900 GO:0032501 GO:0032502 GO:0032991 GO:0034284 GO:0034641 GO:0034645 GO:0042063 GO:0042221 GO:0043043 GO:0043170 GO:0043434 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0048468 GO:0048513 GO:0048518 GO:0048583 GO:0048584 GO:0048709 GO:0048731 GO:0048856 GO:0048869 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050851 GO:0050852 GO:0050896 GO:0051020 GO:0051716 GO:0060322 GO:0065007 GO:0065009 GO:0071704 GO:0098772 GO:1901564 GO:1901566 GO:1901576 GO:1901652 GO:1901698 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko03013 map03013

Pfam Domains

Protein Families

Hexapep NTP_transf_3 NTP_transferase

Protein Analysis

110

Amino Acids

12.3

Weight (kDa)

4.92

Isoelectric Point (pI)

16.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NTP_transf_3	PF12804	5 - 72	8.1e-08	MobA-like NTP transferase domain
NTP_transferase	PF00483	5 - 82	7.6e-07	Nucleotidyl transferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006736)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19485
fragaria_vesca	FvH4_1g25390
malus_domestica	MD03G1163000.v1.1
prunus_persica	Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1 Prupe.4G269500_v2.0.a1
pyrus_communis	pycom12561g00150 pycom5153684g00170
rosa_chinensis	RchiOBHm_Chr2g0123421
rosa_laevigata	RLG00000018753 RLG00000036275
rosa_multiflora	Rmu_sc0018866.1_g000001
rosa_roxburghii	Rroxscaffold_2G00093620 Rroxscaffold_2G00120680 Rroxscaffold_5G00351380
rosa_rugosa	Rorug02G0245500 Rorug02G0245500
rosa_samantha	Rh2AG304300 Rh2BG312300 Rh2CG290800 Rh2DG328300 Rh5AG454400
rosa_wichuraiana	Rw2G024360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	16
AciI	CCGC	2 cut(s)	30, 164
AcoI	YGGCCR	1 cut(s)	101
AcsI	RAATTY	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	16
AflII	CTTAAG	1 cut(s)	146
AgsI	TTSAA	3 cut(s)	170, 245, 316
AjnI	CCWGG	1 cut(s)	237
AluBI	AGCT	3 cut(s)	80, 127, 215
AluI	AGCT	3 cut(s)	80, 127, 215
Alw21I	GWGCWC	2 cut(s)	129, 201
Alw26I	GTCTC	1 cut(s)	64
AoxI	GGCC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	309
AspLEI	GCGC	1 cut(s)	184
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	2 cut(s)	129, 201
BciT130I	CCWGG	1 cut(s)	239
BciVI	GTATCC	1 cut(s)	245
BcoDI	GTCTC	1 cut(s)	64
BfrI	CTTAAG	1 cut(s)	146
BfuI	GTATCC	1 cut(s)	245
Bme1390I	CCNGG	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	239
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
BpmI	CTGGAG	1 cut(s)	143
Bsa29I	ATCGAT	2 cut(s)	222, 226
BsaWI	WCCGGW	1 cut(s)	88
Bsc4I	CCNNNNNNNGG	1 cut(s)	16
Bse118I	RCCGGY	2 cut(s)	26, 99
Bse1I	ACTGG	2 cut(s)	104, 206
Bse3DI	GCAATG	1 cut(s)	269
BseBI	CCWGG	1 cut(s)	239
BseCI	ATCGAT	2 cut(s)	222, 226
BseGI	GGATG	1 cut(s)	35
BseLI	CCNNNNNNNGG	1 cut(s)	16
BseMI	GCAATG	1 cut(s)	269
BseMII	CTCAG	1 cut(s)	151
BseNI	ACTGG	2 cut(s)	104, 206
Bsh1285I	CGRYCG	1 cut(s)	226
BshFI	GGCC	1 cut(s)	103
BshVI	ATCGAT	2 cut(s)	222, 226
BsiEI	CGRYCG	1 cut(s)	226
BsiHKAI	GWGCWC	2 cut(s)	129, 201
BsiSI	CCGG	3 cut(s)	27, 89, 100
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	1 cut(s)	16
BsmAI	GTCTC	1 cut(s)	64
BsmBI	CGTCTC	1 cut(s)	64
BsmFI	GGGAC	1 cut(s)	236
BsnI	GGCC	1 cut(s)	103
Bsp1286I	GDGCHC	2 cut(s)	129, 201
Bsp143I	GATC	1 cut(s)	223
BspACI	CCGC	2 cut(s)	30, 164
BspANI	GGCC	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	150
BspDI	ATCGAT	2 cut(s)	222, 226
BspTI	CTTAAG	1 cut(s)	146
BsrDI	GCAATG	1 cut(s)	269
BsrFI	RCCGGY	2 cut(s)	26, 99
BsrI	ACTGG	2 cut(s)	104, 206
BssAI	RCCGGY	2 cut(s)	26, 99
BssMI	GATC	1 cut(s)	223
Bst2UI	CCWGG	1 cut(s)	239
Bst6I	CTCTTC	1 cut(s)	169
BstAFI	CTTAAG	1 cut(s)	146
BstC8I	GCNNGC	1 cut(s)	28
BstDEI	CTNAG	5 cut(s)	22, 63, 130, 137, 283
BstF5I	GGATG	1 cut(s)	35
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	1 cut(s)	226
BstMAI	GTCTC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	223
BstMCI	CGRYCG	1 cut(s)	226
BstNI	CCWGG	1 cut(s)	239
BstSCI	CCNGG	1 cut(s)	237
Bsu15I	ATCGAT	2 cut(s)	222, 226
BsuI	GTATCC	1 cut(s)	245
BsuRI	GGCC	1 cut(s)	103
BsuTUI	ATCGAT	2 cut(s)	222, 226
BtsCI	GGATG	1 cut(s)	35
BtsIMutI	CAGTG	1 cut(s)	199
Cac8I	GCNNGC	1 cut(s)	28
CfoI	GCGC	1 cut(s)	184
Cfr10I	RCCGGY	2 cut(s)	26, 99
ClaI	ATCGAT	2 cut(s)	222, 226
CviAII	CATG	2 cut(s)	185, 322
CviJI	RGCY	5 cut(s)	26, 80, 103, 127, 215
CviKI_1	RGCY	5 cut(s)	26, 80, 103, 127, 215
DdeI	CTNAG	5 cut(s)	22, 63, 130, 137, 283
DpnI	GATC	1 cut(s)	225
DpnII	GATC	1 cut(s)	223
EaeI	YGGCCR	1 cut(s)	101
Eam1104I	CTCTTC	1 cut(s)	169
EarI	CTCTTC	1 cut(s)	169
EciI	GGCGGA	1 cut(s)	45
Ecl136II	GAGCTC	1 cut(s)	127
Eco24I	GRGCYC	1 cut(s)	129
Eco32I	GATATC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	127
EcoICRI	GAGCTC	1 cut(s)	127
EcoRII	CCWGG	1 cut(s)	237
EcoRV	GATATC	1 cut(s)	154
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	64
FaeI	CATG	2 cut(s)	188, 325
FaiI	YATR	5 cut(s)	117, 186, 219, 232, 323
FalI	AAGNNNNNCTT	2 cut(s)	69, 101
FaqI	GGGAC	1 cut(s)	236
FatI	CATG	2 cut(s)	184, 321
FokI	GGATG	1 cut(s)	22
FriOI	GRGCYC	1 cut(s)	129
GlaI	GCGC	1 cut(s)	183
GsuI	CTGGAG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	3 cut(s)	27, 89, 100
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	2 cut(s)	188, 325
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	213
HinfI	GANTC	2 cut(s)	249, 293
HpaII	CCGG	3 cut(s)	27, 89, 100
Hpy188I	TCNGA	1 cut(s)	75
Hpy188III	TCNNGA	1 cut(s)	122
Hpy99I	CGWCG	1 cut(s)	53
HpyAV	CCTTC	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	274
HpyF3I	CTNAG	5 cut(s)	22, 63, 130, 137, 283
Hsp92II	CATG	2 cut(s)	188, 325
HspAI	GCGC	1 cut(s)	182
KroI	GCCGGC	1 cut(s)	26
KroNI	GCCGGC	1 cut(s)	28
Kzo9I	GATC	1 cut(s)	223
LmnI	GCTCC	1 cut(s)	124
MaeIII	GTNAC	1 cut(s)	140
MalI	GATC	1 cut(s)	225
MboI	GATC	1 cut(s)	223
MboII	GAAGA	1 cut(s)	186
MhlI	GDGCHC	2 cut(s)	129, 201
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	2 cut(s)	258, 287
MmeI	TCCRAC	1 cut(s)	244
MnlI	CCTC	1 cut(s)	61
MroNI	GCCGGC	1 cut(s)	26
MseI	TTAA	1 cut(s)	147
MspCI	CTTAAG	1 cut(s)	146
MspI	CCGG	3 cut(s)	27, 89, 100
MspR9I	CCNGG	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	239
NaeI	GCCGGC	1 cut(s)	28
NdeII	GATC	1 cut(s)	223
NgoMIV	GCCGGC	1 cut(s)	26
NlaIII	CATG	2 cut(s)	188, 325
PcsI	WCGNNNNNNNCGW	1 cut(s)	54
PdiI	GCCGGC	1 cut(s)	28
PflMI	CCANNNNNTGG	1 cut(s)	16
Ple19I	CGATCG	1 cut(s)	226
PleI	GAGTC	2 cut(s)	257, 287
PpsI	GAGTC	2 cut(s)	257, 287
Psp124BI	GAGCTC	1 cut(s)	129
Psp6I	CCWGG	1 cut(s)	237
PspGI	CCWGG	1 cut(s)	237
PvuI	CGATCG	1 cut(s)	226
SacI	GAGCTC	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	147
Sau3AI	GATC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	258, 287
ScrFI	CCNGG	1 cut(s)	239
SduI	GDGCHC	2 cut(s)	129, 201
SetI	ASST	6 cut(s)	72, 82, 129, 147, 217, 243
SmlI	CTYRAG	1 cut(s)	146
SmoI	CTYRAG	1 cut(s)	146
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	2 cut(s)	30, 164
SstI	GAGCTC	1 cut(s)	129
StyD4I	CCNGG	1 cut(s)	237
TaqI	TCGA	2 cut(s)	222, 226
TasI	AATT	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	147
Tru9I	TTAA	1 cut(s)	147
TscAI	CASTG	1 cut(s)	206
TspRI	CASTG	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	16
Vha464I	CTTAAG	1 cut(s)	146
XapI	RAATTY	1 cut(s)	309

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.