Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1726209 .. 1727475

Gene Structure 1267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02020.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGTTCATTTGCCGGTACATCTGAAATTGTGGAAGCGAAAGATGAGCTGACTACAGGTCAATATTCTCATGGAATACATCAGCTGAATTCTGGATTTAGTAAAGGTGACAAAGATTGGAAGCCTCCTCCTGTTCTAAAACTGGGATACAAGGATTCTCTAGAAGATGATATTAATAAGCTCTTCGAGGCAATCAAAACTCCATCCAAGGGTTCAGATCATTCAAAGCAAGTAGGCGCAAGCCCTTTAAATAGAAATGCCTTAAAGAAACCAATTACAGTGGGTGTGTCTCGCTCACCAGGGATTGGTAATTCAGAACCGGCGACACTGAAGCAGGCGTTAAGAGAGCTCTCTATTACCAAGGCATCAGAAATGGCTGCTATGAAACGATTATCAAAATTGACAAGTCCTGCAAGACCCTCGGAAGCTGGGAGGATCAAGACGTTATACAATGCAGTTGTTGTTCAACCCAGTCAATCTGGTGCCTCCTCAAGTGAAGATAGGGGAAATATGGTTGAAATCTCTCTGGTGCCAGAAGAAAGCATTTCAAATTCTTGTGAGGAGTTGTCTGAGCATCCTCAAATGTCCAAGATGAAGTCATCAAGCCAGAGTGGACATTCTTCTCCTCGATTTGCCATTGGGAAAGCAGAAAATAACTCCGGGAGCACAATATTGCAAAATGAAAGTACCTCCAGTTGCAAGTTAAGGACAGTAGGGGAGCAAACAGTGAAGGCGGAACTGGGACAGAAGAAAAGAATTAAATCTAAAAGTGATCATATTTCAGAACTTGCTGAAAATGTTCCTTCCAGGACCATGTTACAGACAAAAATCAAGACGGAGCTGGTGAAGAAAGAGAAACTTAAATCGACAAGTGGCATTACATCAGTACTTGTTCAAAATGTTCCTGCCAAAACCAAGTTAGCCAATAAGCTATCAGCAGCAAAACCAGGGCGGAAAGTCAAGTTGCATGTAGTACCTTCTTCATCGAGTTCGGTGAATCGAAATCTGGCAAGCAAAGTATCCAGAAATGCCCTCCGCTCTGTAAAAGCAGCCAGCAGGAATAGGAATATCGTAAAGAAGAAGACAAGGCAAGACTGGTCTGCGAGAGATGTCAATGTGCAATACAAGGTGCTGGACAACAATCCAATCAAGGTTCTTTGGCACCCCAGTTTAACGGTCTTACTGCTGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

398

Amino Acids

43.09

Weight (kDa)

10.05

Isoelectric Point (pI)

52.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36350 AT3G52890 AT3G52890 AT3G52890 AT3G52890 AT5G03640 AT5G03640
fragaria_vesca	FvH4_6g18180
malus_domestica	MD12G1021500.v1.1 MD14G1018600.v1.1
prunus_persica	Prupe.7G114900_v2.0.a1
pyrus_communis	pycom12g02020 pycom14g01780
rosa_chinensis	RchiOBHm_Chr3g0472511
rosa_laevigata	RLG00000024074
rosa_multiflora	Rmu_co8030082.1_g000001 Rmu_co8221566.1_g000001 Rmu_co8433985.1_g000001 Rmu_sc0011581.1_g000002 Rmu_sc0020040.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408870
rosa_rugosa	Rorug03G0126100
rosa_samantha	Rh3AG178000 Rh3BG203900 Rh3CG194300 Rh3CG201400 Rh3DG171000
rosa_wichuraiana	Rw3G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	482, 529, 1161
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccBSI	CCGCTC	1 cut(s)	1038
AciI	CCGC	3 cut(s)	734, 952, 1036
AclWI	GGATC	1 cut(s)	443
AcsI	RAATTY	2 cut(s)	88, 550
AcuI	CTGAAG	1 cut(s)	350
AfaI	GTAC	4 cut(s)	19, 688, 888, 975
AfiI	CCNNNNNNNGG	2 cut(s)	209, 305
AgsI	TTSAA	5 cut(s)	225, 467, 518, 549, 896
AhdI	GACNNNNNGTC	1 cut(s)	57
AjnI	CCWGG	3 cut(s)	298, 806, 946
AluBI	AGCT	7 cut(s)	49, 85, 181, 349, 428, 841, 931
AluI	AGCT	7 cut(s)	49, 85, 181, 349, 428, 841, 931
Alw21I	GWGCWC	2 cut(s)	351, 668
Alw26I	GTCTC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	443
ApeKI	GCWGC	3 cut(s)	377, 938, 1049
ApoI	RAATTY	2 cut(s)	88, 550
AseI	ATTAAT	1 cut(s)	174
Asp700I	GAANNNNTTC	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	239
AspS9I	GGNCC	1 cut(s)	810
AsuC2I	CCSGG	1 cut(s)	661
AsuHPI	GGTGA	4 cut(s)	119, 288, 856, 1006
AvaII	GGWCC	1 cut(s)	810
BanI	GGYRCC	3 cut(s)	482, 529, 1161
BanII	GRGCYC	1 cut(s)	351
BbsI	GAAGAC	1 cut(s)	1088
Bbv12I	GWGCWC	2 cut(s)	351, 668
BbvCI	CCTCAGC	1 cut(s)	1187
BbvI	GCAGC	3 cut(s)	364, 950, 1061
BccI	CCATC	1 cut(s)	211
BcgI	CGANNNNNNTGC	2 cut(s)	402, 436
BciT130I	CCWGG	3 cut(s)	300, 808, 948
BciVI	GTATCC	2 cut(s)	140, 1030
BclI	TGATCA	1 cut(s)	772
BcnI	CCSGG	1 cut(s)	661
BcoDI	GTCTC	1 cut(s)	294
BfaI	CTAG	1 cut(s)	161
BfmI	CTRYAG	1 cut(s)	54
BfuI	GTATCC	2 cut(s)	140, 1030
BisI	GCNGC	3 cut(s)	378, 939, 1050
BlsI	GCNGC	3 cut(s)	379, 940, 1051
BmcAI	AGTACT	1 cut(s)	888
Bme1390I	CCNGG	4 cut(s)	300, 661, 808, 948
Bme18I	GGWCC	1 cut(s)	810
BmeRI	GACNNNNNGTC	1 cut(s)	57
BmgT120I	GGNCC	1 cut(s)	810
BmiI	GGNNCC	3 cut(s)	484, 531, 1163
BmrFI	CCNGG	4 cut(s)	300, 661, 808, 948
BmrI	ACTGGG	4 cut(s)	152, 465, 749, 1161
BmsI	GCATC	2 cut(s)	374, 583
BmuI	ACTGGG	4 cut(s)	152, 465, 749, 1161
BpiI	GAAGAC	1 cut(s)	1088
BpmI	CTGGAG	1 cut(s)	676
Bpu10I	CCTNAGC	1 cut(s)	1187
BpuEI	CTTGAG	1 cut(s)	475
BpuMI	CCSGG	1 cut(s)	661
BsaJI	CCNNGG	5 cut(s)	207, 299, 360, 420, 947
Bsc4I	CCNNNNNNNGG	2 cut(s)	209, 305
Bse118I	RCCGGY	2 cut(s)	14, 319
Bse1I	ACTGG	6 cut(s)	147, 471, 693, 744, 1100, 1167
BseBI	CCWGG	3 cut(s)	300, 808, 948
BseDI	CCNNGG	5 cut(s)	207, 299, 360, 420, 947
BseGI	GGATG	2 cut(s)	203, 574
BseLI	CCNNNNNNNGG	2 cut(s)	209, 305
BseMII	CTCAG	2 cut(s)	561, 1178
BseNI	ACTGG	6 cut(s)	147, 471, 693, 744, 1100, 1167
BseRI	GAGGAG	4 cut(s)	117, 478, 575, 615
BseXI	GCAGC	3 cut(s)	364, 950, 1061
BseYI	CCCAGC	1 cut(s)	428
BshNI	GGYRCC	3 cut(s)	482, 529, 1161
BsiHKAI	GWGCWC	2 cut(s)	351, 668
BsiSI	CCGG	3 cut(s)	15, 320, 660
BslFI	GGGAC	1 cut(s)	756
BslI	CCNNNNNNNGG	2 cut(s)	209, 305
BsmAI	GTCTC	1 cut(s)	294
BsmFI	GGGAC	1 cut(s)	756
Bsp1286I	GDGCHC	2 cut(s)	351, 668
Bsp143I	GATC	3 cut(s)	217, 435, 772
BspACI	CCGC	3 cut(s)	734, 952, 1036
BspCNI	CTCAG	2 cut(s)	562, 1179
BspLI	GGNNCC	3 cut(s)	484, 531, 1163
BspPI	GGATC	1 cut(s)	443
BspQI	GCTCTTC	1 cut(s)	188
BspT107I	GGYRCC	3 cut(s)	482, 529, 1161
BsrBI	CCGCTC	1 cut(s)	1038
BsrFI	RCCGGY	2 cut(s)	14, 319
BsrI	ACTGG	6 cut(s)	147, 471, 693, 744, 1100, 1167
BssAI	RCCGGY	2 cut(s)	14, 319
BssECI	CCNNGG	5 cut(s)	207, 299, 360, 420, 947
BssMI	GATC	3 cut(s)	217, 435, 772
BssT1I	CCWWGG	2 cut(s)	207, 360
Bst2UI	CCWGG	3 cut(s)	300, 808, 948
Bst4CI	ACNGT	4 cut(s)	280, 712, 727, 1177
Bst6I	CTCTTC	1 cut(s)	188
BstC8I	GCNNGC	4 cut(s)	241, 336, 1012, 1054
BstDEI	CTNAG	2 cut(s)	570, 1187
BstF5I	GGATG	2 cut(s)	203, 574
BstHHI	GCGC	1 cut(s)	239
BstKTI	GATC	3 cut(s)	220, 438, 775
BstMAI	GTCTC	1 cut(s)	294
BstMBI	GATC	3 cut(s)	217, 435, 772
BstNI	CCWGG	3 cut(s)	300, 808, 948
BstNSI	RCATGY	1 cut(s)	971
BstSCI	CCNGG	4 cut(s)	298, 659, 806, 946
BstSFI	CTRYAG	1 cut(s)	54
BstV1I	GCAGC	3 cut(s)	364, 950, 1061
BstV2I	GAAGAC	1 cut(s)	1088
BsuI	GTATCC	2 cut(s)	140, 1030
BtsCI	GGATG	2 cut(s)	203, 574
BtsIMutI	CAGTG	3 cut(s)	285, 326, 732
Cac8I	GCNNGC	4 cut(s)	241, 336, 1012, 1054
CfoI	GCGC	1 cut(s)	239
Cfr10I	RCCGGY	2 cut(s)	14, 319
Cfr13I	GGNCC	1 cut(s)	810
Csp6I	GTAC	4 cut(s)	18, 687, 887, 974
CspCI	CAANNNNNGTGG	2 cut(s)	261, 296
CviAII	CATG	3 cut(s)	71, 814, 968
CviQI	GTAC	4 cut(s)	18, 687, 887, 974
DdeI	CTNAG	2 cut(s)	570, 1187
DpnI	GATC	3 cut(s)	219, 437, 774
DpnII	GATC	3 cut(s)	217, 435, 772
DraI	TTTAAA	1 cut(s)	249
DriI	GACNNNNNGTC	1 cut(s)	57
Eam1104I	CTCTTC	1 cut(s)	188
Eam1105I	GACNNNNNGTC	1 cut(s)	57
EarI	CTCTTC	1 cut(s)	188
EciI	GGCGGA	2 cut(s)	749, 967
Ecl136II	GAGCTC	1 cut(s)	349
Eco130I	CCWWGG	2 cut(s)	207, 360
Eco24I	GRGCYC	1 cut(s)	351
Eco47I	GGWCC	1 cut(s)	810
Eco53kI	GAGCTC	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	350
EcoICRI	GAGCTC	1 cut(s)	349
EcoRI	GAATTC	1 cut(s)	88
EcoRII	CCWGG	3 cut(s)	298, 806, 946
EcoT14I	CCWWGG	2 cut(s)	207, 360
EcoT38I	GRGCYC	1 cut(s)	351
ErhI	CCWWGG	2 cut(s)	207, 360
FaeI	CATG	3 cut(s)	74, 817, 971
FaiI	YATR	7 cut(s)	72, 383, 448, 512, 777, 815, 969
FalI	AAGNNNNNCTT	2 cut(s)	843, 875
FaqI	GGGAC	1 cut(s)	756
FatI	CATG	3 cut(s)	70, 813, 967
FbaI	TGATCA	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	378, 939, 1050
FokI	GGATG	2 cut(s)	190, 561
FriOI	GRGCYC	1 cut(s)	351
Fsp4HI	GCNGC	3 cut(s)	378, 939, 1050
FspBI	CTAG	1 cut(s)	161
GlaI	GCGC	1 cut(s)	238
GluI	GCNGC	3 cut(s)	378, 939, 1050
GsaI	CCCAGC	1 cut(s)	432
GsuI	CTGGAG	1 cut(s)	676
HapII	CCGG	3 cut(s)	15, 320, 660
HhaI	GCGC	1 cut(s)	239
Hin1II	CATG	3 cut(s)	74, 817, 971
Hin6I	GCGC	1 cut(s)	237
HinP1I	GCGC	1 cut(s)	237
HinfI	GANTC	2 cut(s)	155, 997
HpaII	CCGG	3 cut(s)	15, 320, 660
HphI	GGTGA	4 cut(s)	119, 288, 856, 1006
Hpy166II	GTNNAC	1 cut(s)	614
Hpy188I	TCNGA	7 cut(s)	25, 217, 316, 370, 424, 571, 784
Hpy188III	TCNNGA	5 cut(s)	93, 161, 439, 832, 1023
Hpy8I	GTNNAC	1 cut(s)	614
HpyAV	CCTTC	3 cut(s)	724, 813, 987
HpyCH4III	ACNGT	4 cut(s)	280, 712, 727, 1177
HpyCH4IV	ACGT	1 cut(s)	443
HpyCH4V	TGCA	6 cut(s)	413, 455, 676, 699, 967, 1120
HpyF3I	CTNAG	2 cut(s)	570, 1187
HpySE526I	ACGT	1 cut(s)	443
Hsp92II	CATG	3 cut(s)	74, 817, 971
HspAI	GCGC	1 cut(s)	237
Ksp22I	TGATCA	1 cut(s)	772
Kzo9I	GATC	3 cut(s)	217, 435, 772
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	3 cut(s)	663, 718, 838
Lsp1109I	GCAGC	3 cut(s)	364, 950, 1061
LweI	GCATC	2 cut(s)	374, 583
MaeI	CTAG	1 cut(s)	161
MaeII	ACGT	1 cut(s)	443
MaeIII	GTNAC	2 cut(s)	107, 816
MalI	GATC	3 cut(s)	219, 437, 774
MbiI	CCGCTC	1 cut(s)	1038
MboI	GATC	3 cut(s)	217, 435, 772
MhlI	GDGCHC	2 cut(s)	351, 668
MluCI	AATT	7 cut(s)	27, 88, 273, 310, 398, 550, 756
MroXI	GAANNNNTTC	1 cut(s)	798
MseI	TTAA	8 cut(s)	174, 248, 263, 341, 704, 759, 861, 1172
MspA1I	CMGCKG	1 cut(s)	85
MspI	CCGG	3 cut(s)	15, 320, 660
MspR9I	CCNGG	4 cut(s)	300, 661, 808, 948
MvaI	CCWGG	3 cut(s)	300, 808, 948
NciI	CCSGG	1 cut(s)	661
NdeII	GATC	3 cut(s)	217, 435, 772
NlaIII	CATG	3 cut(s)	74, 817, 971
NlaIV	GGNNCC	3 cut(s)	484, 531, 1163
NmuCI	GTSAC	1 cut(s)	107
NspI	RCATGY	1 cut(s)	971
PciSI	GCTCTTC	1 cut(s)	188
PdmI	GAANNNNTTC	1 cut(s)	798
PfeI	GAWTC	2 cut(s)	155, 997
PflMI	CCANNNNNTGG	1 cut(s)	305
PfoI	TCCNGGA	2 cut(s)	659, 806
PkrI	GCNGC	3 cut(s)	379, 940, 1051
PshBI	ATTAAT	1 cut(s)	174
Psp124BI	GAGCTC	1 cut(s)	351
Psp6I	CCWGG	3 cut(s)	298, 806, 946
PspFI	CCCAGC	1 cut(s)	428
PspGI	CCWGG	3 cut(s)	298, 806, 946
PspN4I	GGNNCC	3 cut(s)	484, 531, 1163
PspPI	GGNCC	1 cut(s)	810
PvuII	CAGCTG	1 cut(s)	85
RsaI	GTAC	4 cut(s)	19, 688, 888, 975
RsaNI	GTAC	4 cut(s)	18, 687, 887, 974
SacI	GAGCTC	1 cut(s)	351
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	8 cut(s)	174, 248, 263, 341, 704, 759, 861, 1172
SatI	GCNGC	3 cut(s)	378, 939, 1050
Sau3AI	GATC	3 cut(s)	217, 435, 772
Sau96I	GGNCC	1 cut(s)	810
ScaI	AGTACT	1 cut(s)	888
ScrFI	CCNGG	4 cut(s)	300, 661, 808, 948
SduI	GDGCHC	2 cut(s)	351, 668
SfaNI	GCATC	2 cut(s)	374, 583
SfcI	CTRYAG	1 cut(s)	54
SinI	GGWCC	1 cut(s)	810
SmlI	CTYRAG	1 cut(s)	490
SmoI	CTYRAG	1 cut(s)	490
Sse9I	AATT	7 cut(s)	27, 88, 273, 310, 398, 550, 756
SsiI	CCGC	3 cut(s)	734, 952, 1036
SspI	AATATT	2 cut(s)	65, 672
SspMI	CTAG	1 cut(s)	161
SstI	GAGCTC	1 cut(s)	351
StyD4I	CCNGG	4 cut(s)	298, 659, 806, 946
StyI	CCWWGG	2 cut(s)	207, 360
TaaI	ACNGT	4 cut(s)	280, 712, 727, 1177
TaiI	ACGT	1 cut(s)	446
TaqI	TCGA	5 cut(s)	186, 628, 866, 986, 1000
TasI	AATT	7 cut(s)	27, 88, 273, 310, 398, 550, 756
TatI	WGTACW	1 cut(s)	886
TfiI	GAWTC	2 cut(s)	155, 997
Tru1I	TTAA	8 cut(s)	174, 248, 263, 341, 704, 759, 861, 1172
Tru9I	TTAA	8 cut(s)	174, 248, 263, 341, 704, 759, 861, 1172
TscAI	CASTG	3 cut(s)	285, 333, 732
TseFI	GTSAC	1 cut(s)	107
TseI	GCWGC	3 cut(s)	377, 938, 1049
Tsp45I	GTSAC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	398, 608, 696, 972
TspGWI	ACGGA	1 cut(s)	851
TspRI	CASTG	3 cut(s)	285, 333, 732
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	810
VspI	ATTAAT	1 cut(s)	174
XapI	RAATTY	2 cut(s)	88, 550
XbaI	TCTAGA	1 cut(s)	160
XceI	RCATGY	1 cut(s)	971
XmnI	GAANNNNTTC	1 cut(s)	798
XspI	CTAG	1 cut(s)	161
ZrmI	AGTACT	1 cut(s)	888

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.