Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8221566.1

Orthogroup ID

OG0005763

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 375

Gene Structure 375 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8221566.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 375 bp

ctgttcgagctgctatatggtaagacacccttcaagggatcaggaaatgaggacacattagccaatgttgtctcaaaaagtctcaagttcccaaacaaccccatagttagttttcatgcacgagatttgatcagaggcctcttaataaaggaccctgagaatcgtttaggatctgtgaagggggctgcagagattaagcagcatcctttctttgaaggccttaactgggcattagttcggtgtgcaataccaccagagatgcccaaattgtgtgatagtgtaatttgtgcacctcctgctccacagatgcaggagagcacagggtgcaaggagttggagggtacagtagagcatgtagactttgagctgttttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

124

Amino Acids

13.69

Weight (kDa)

5.59

Isoelectric Point (pI)

23.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36350 AT3G52890 AT3G52890 AT3G52890 AT3G52890 AT5G03640 AT5G03640
fragaria_vesca	FvH4_6g18180
malus_domestica	MD12G1021500.v1.1 MD14G1018600.v1.1
prunus_persica	Prupe.7G114900_v2.0.a1
pyrus_communis	pycom12g02020 pycom14g01780
rosa_chinensis	RchiOBHm_Chr3g0472511
rosa_laevigata	RLG00000024074
rosa_multiflora	Rmu_co8030082.1_g000001 Rmu_co8221566.1_g000001 Rmu_co8433985.1_g000001 Rmu_sc0011581.1_g000002 Rmu_sc0020040.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408870
rosa_rugosa	Rorug03G0126100
rosa_samantha	Rh3AG178000 Rh3BG203900 Rh3CG194300 Rh3CG201400 Rh3DG171000
rosa_wichuraiana	Rw3G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	46, 178
AdeI	CACNNNGTG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	343
AfiI	CCNNNNNNNGG	2 cut(s)	35, 226
AgsI	TTSAA	2 cut(s)	34, 215
AluBI	AGCT	2 cut(s)	10, 367
AluI	AGCT	2 cut(s)	10, 367
Alw21I	GWGCWC	2 cut(s)	292, 320
Alw26I	GTCTC	2 cut(s)	76, 86
Alw44I	GTGCAC	1 cut(s)	288
AlwI	GGATC	2 cut(s)	46, 178
AoxI	GGCC	2 cut(s)	136, 217
ApaLI	GTGCAC	1 cut(s)	288
ApeKI	GCWGC	3 cut(s)	10, 185, 199
AspS9I	GGNCC	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	151
BaeGI	GKGCMC	1 cut(s)	292
BauI	CACGAG	1 cut(s)	120
Bbv12I	GWGCWC	2 cut(s)	292, 320
BbvI	GCAGC	2 cut(s)	172, 211
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	76, 86
BfmI	CTRYAG	1 cut(s)	186
BisI	GCNGC	3 cut(s)	11, 186, 200
BlsI	GCNGC	3 cut(s)	12, 187, 201
Bme18I	GGWCC	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	151
BmiI	GGNNCC	1 cut(s)	153
BmrI	ACTGGG	1 cut(s)	235
BmsI	GCATC	3 cut(s)	211, 249, 297
BmuI	ACTGGG	1 cut(s)	235
BpuEI	CTTGAG	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 226
Bse1I	ACTGG	1 cut(s)	230
BseGI	GGATG	1 cut(s)	202
BseLI	CCNNNNNNNGG	2 cut(s)	35, 226
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	1 cut(s)	230
BseSI	GKGCMC	1 cut(s)	292
BseXI	GCAGC	2 cut(s)	172, 211
BshFI	GGCC	2 cut(s)	138, 219
BsiHKAI	GWGCWC	2 cut(s)	292, 320
BslI	CCNNNNNNNGG	2 cut(s)	35, 226
BsmAI	GTCTC	2 cut(s)	76, 86
BsnI	GGCC	2 cut(s)	138, 219
Bsp1286I	GDGCHC	2 cut(s)	292, 320
Bsp143I	GATC	3 cut(s)	38, 129, 170
BspANI	GGCC	2 cut(s)	138, 219
BspCNI	CTCAG	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	153
BspMAI	CTGCAG	1 cut(s)	190
BspPI	GGATC	2 cut(s)	46, 178
BsrI	ACTGG	1 cut(s)	230
BssMI	GATC	3 cut(s)	38, 129, 170
BssSI	CACGAG	1 cut(s)	120
Bst2BI	CACGAG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	346
BstAPI	GCANNNNNTGC	2 cut(s)	296, 324
BstDEI	CTNAG	1 cut(s)	156
BstF5I	GGATG	1 cut(s)	202
BstKTI	GATC	3 cut(s)	41, 132, 173
BstMAI	GTCTC	2 cut(s)	76, 86
BstMBI	GATC	3 cut(s)	38, 129, 170
BstMWI	GCNNNNNNNGC	2 cut(s)	296, 324
BstNSI	RCATGY	1 cut(s)	356
BstSFI	CTRYAG	1 cut(s)	186
BstSLI	GKGCMC	1 cut(s)	292
BstV1I	GCAGC	2 cut(s)	172, 211
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
BsuRI	GGCC	2 cut(s)	138, 219
BtsCI	GGATG	1 cut(s)	202
Cfr13I	GGNCC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	116, 353
CviJI	RGCY	6 cut(s)	10, 62, 138, 185, 219, 367
CviKI_1	RGCY	6 cut(s)	10, 62, 138, 185, 219, 367
CviQI	GTAC	1 cut(s)	342
DdeI	CTNAG	1 cut(s)	156
DpnI	GATC	3 cut(s)	40, 131, 172
DpnII	GATC	3 cut(s)	38, 129, 170
DraIII	CACNNNGTG	1 cut(s)	324
Eco147I	AGGCCT	2 cut(s)	138, 219
Eco47I	GGWCC	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	151
FaeI	CATG	2 cut(s)	119, 356
FaiI	YATR	5 cut(s)	16, 18, 104, 117, 354
FalI	AAGNNNNNCTT	2 cut(s)	14, 46
FatI	CATG	2 cut(s)	115, 352
FbaI	TGATCA	1 cut(s)	129
FblI	GTMKAC	1 cut(s)	357
Fnu4HI	GCNGC	3 cut(s)	11, 186, 200
FokI	GGATG	1 cut(s)	189
Fsp4HI	GCNGC	3 cut(s)	11, 186, 200
GluI	GCNGC	3 cut(s)	11, 186, 200
HaeIII	GGCC	2 cut(s)	138, 219
Hin1II	CATG	2 cut(s)	119, 356
HinfI	GANTC	1 cut(s)	160
Hpy166II	GTNNAC	2 cut(s)	290, 358
Hpy188I	TCNGA	1 cut(s)	134
Hpy188III	TCNNGA	1 cut(s)	42
Hpy8I	GTNNAC	2 cut(s)	290, 358
HpyAV	CCTTC	3 cut(s)	40, 172, 209
HpyCH4III	ACNGT	1 cut(s)	346
HpyCH4V	TGCA	6 cut(s)	119, 188, 245, 290, 310, 327
HpyF10VI	GCNNNNNNNGC	2 cut(s)	296, 324
HpyF3I	CTNAG	1 cut(s)	156
Hsp92II	CATG	2 cut(s)	119, 356
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	3 cut(s)	38, 129, 170
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	7 cut(s)	27, 168, 211, 267, 296, 306, 309
Lsp1109I	GCAGC	2 cut(s)	172, 211
LweI	GCATC	3 cut(s)	211, 249, 297
MalI	GATC	3 cut(s)	40, 131, 172
MboI	GATC	3 cut(s)	38, 129, 170
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	2 cut(s)	292, 320
MluCI	AATT	2 cut(s)	266, 282
MmeI	TCCRAC	1 cut(s)	315
MnlI	CCTC	5 cut(s)	43, 128, 149, 303, 331
MseI	TTAA	3 cut(s)	143, 195, 222
MwoI	GCNNNNNNNGC	2 cut(s)	296, 324
NdeII	GATC	3 cut(s)	38, 129, 170
NlaIII	CATG	2 cut(s)	119, 356
NlaIV	GGNNCC	1 cut(s)	153
NspI	RCATGY	1 cut(s)	356
PceI	AGGCCT	2 cut(s)	138, 219
PfeI	GAWTC	1 cut(s)	160
PkrI	GCNGC	3 cut(s)	12, 187, 201
PpuMI	RGGWCCY	1 cut(s)	151
Psp5II	RGGWCCY	1 cut(s)	151
PspN4I	GGNNCC	1 cut(s)	153
PspPI	GGNCC	1 cut(s)	151
PspPPI	RGGWCCY	1 cut(s)	151
PstI	CTGCAG	1 cut(s)	190
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
SaqAI	TTAA	3 cut(s)	143, 195, 222
SatI	GCNGC	3 cut(s)	11, 186, 200
Sau3AI	GATC	3 cut(s)	38, 129, 170
Sau96I	GGNCC	1 cut(s)	151
SduI	GDGCHC	2 cut(s)	292, 320
SetI	ASST	3 cut(s)	12, 295, 369
SfaNI	GCATC	3 cut(s)	211, 249, 297
SfcI	CTRYAG	1 cut(s)	186
SinI	GGWCC	1 cut(s)	151
SmlI	CTYRAG	1 cut(s)	83
SmoI	CTYRAG	1 cut(s)	83
Sse9I	AATT	2 cut(s)	266, 282
SseBI	AGGCCT	2 cut(s)	138, 219
StuI	AGGCCT	2 cut(s)	138, 219
TaaI	ACNGT	1 cut(s)	346
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	266, 282
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	3 cut(s)	143, 195, 222
Tru9I	TTAA	3 cut(s)	143, 195, 222
TseI	GCWGC	3 cut(s)	10, 185, 199
TspDTI	ATGAA	1 cut(s)	104
VneI	GTGCAC	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	151
XceI	RCATGY	1 cut(s)	356
XmiI	GTMKAC	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.