Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020040.1

Orthogroup ID

OG0005763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1310 .. 2116

Gene Structure 807 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020040.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

atgcttggtgtagtttatcgggatctgaaaccggaaaacattcttgtccgggaagatggtcacataatgcttacagattttgacctgtctctcagatgctctgtcagtccaactcttttgaaatcaccttcatgtgatgcagatcctgcgagaatgtctggtccatgtacagcatctaactgcgctgagcccttctgcattgaaccctcctcttgtcaagtctcatgcttcagccctaggtttctacctgctgccacaaaaacaaggaagttgaaaaatgaccctacatctcaagtcagatcattgccacagcttgtggcggagcctagtgacgcacggtccaattcctttgttgggacccacgagtacttggcccccgagatcatcaaaggagacggtcatggtgctgctgttgattggtggacgtttggaatctttctttacgagcttctatatggcagaacaccatttaagggtgttaataacgaggacacattaggcaatgtggtcgtgcagagcctaagattccccgacgccccgattgtgagcttccaggctagggatctcatcagagggctgttggtaaaggagccagagaatcggttgggcactgagagaggagccggtgagattaagcagcatccgttctttgaaggtttgaattgggcactaatccgctgtgctgttccacccgaactgcctgatttttgcgactctgaagttccagacatgcctgctcaggacgataacgccgagtacttggagttcaaaactaccggagagcacctagagtttgagttattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

268

Amino Acids

29.77

Weight (kDa)

4.8

Isoelectric Point (pI)

48.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36350 AT3G52890 AT3G52890 AT3G52890 AT3G52890 AT5G03640 AT5G03640
fragaria_vesca	FvH4_6g18180
malus_domestica	MD12G1021500.v1.1 MD14G1018600.v1.1
prunus_persica	Prupe.7G114900_v2.0.a1
pyrus_communis	pycom12g02020 pycom14g01780
rosa_chinensis	RchiOBHm_Chr3g0472511
rosa_laevigata	RLG00000024074
rosa_multiflora	Rmu_co8030082.1_g000001 Rmu_co8221566.1_g000001 Rmu_co8433985.1_g000001 Rmu_sc0011581.1_g000002 Rmu_sc0020040.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408870
rosa_rugosa	Rorug03G0126100
rosa_samantha	Rh3AG178000 Rh3BG203900 Rh3CG194300 Rh3CG201400 Rh3DG171000
rosa_wichuraiana	Rw3G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	256
AciI	CCGC	2 cut(s)	320, 676
AclWI	GGATC	3 cut(s)	30, 137, 570
AcuI	CTGAAG	2 cut(s)	214, 738
AcyI	GRCGYC	1 cut(s)	534
AfaI	GTAC	3 cut(s)	169, 368, 758
AfiI	CCNNNNNNNGG	3 cut(s)	354, 473, 559
AgsI	TTSAA	6 cut(s)	121, 203, 274, 653, 661, 769
AhdI	GACNNNNNGTC	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	552
AluBI	AGCT	3 cut(s)	313, 448, 549
AluI	AGCT	3 cut(s)	313, 448, 549
Alw21I	GWGCWC	1 cut(s)	786
Alw26I	GTCTC	3 cut(s)	93, 226, 387
AlwI	GGATC	3 cut(s)	30, 137, 570
AlwNI	CAGNNNCTG	1 cut(s)	146
Ama87I	CYCGRG	1 cut(s)	377
AoxI	GGCC	1 cut(s)	372
ApeKI	GCWGC	3 cut(s)	251, 407, 637
Asp700I	GAANNNNTTC	1 cut(s)	39
AspA2I	CCTAGG	1 cut(s)	236
AspLEI	GCGC	1 cut(s)	185
AspS9I	GGNCC	4 cut(s)	161, 339, 357, 373
AsuC2I	CCSGG	1 cut(s)	50
AsuHPI	GGTGA	2 cut(s)	117, 638
AvaI	CYCGRG	1 cut(s)	377
AvaII	GGWCC	3 cut(s)	161, 339, 357
AvrII	CCTAGG	1 cut(s)	236
BaeGI	GKGCMC	2 cut(s)	611, 670
BanII	GRGCYC	1 cut(s)	192
BauI	CACGAG	1 cut(s)	362
Bbv12I	GWGCWC	1 cut(s)	786
BbvI	GCAGC	3 cut(s)	238, 394, 649
BccI	CCATC	1 cut(s)	50
BcgI	CGANNNNNNTGC	2 cut(s)	490, 524
BciT130I	CCWGG	1 cut(s)	554
BcnI	CCSGG	1 cut(s)	50
BcoDI	GTCTC	3 cut(s)	93, 226, 387
BfaI	CTAG	4 cut(s)	237, 327, 558, 788
BfuAI	ACCTGC	1 cut(s)	256
BisI	GCNGC	3 cut(s)	252, 408, 638
BlnI	CCTAGG	1 cut(s)	236
BlpI	GCTNAGC	1 cut(s)	186
BlsI	GCNGC	3 cut(s)	253, 409, 639
BmcAI	AGTACT	2 cut(s)	368, 758
Bme1390I	CCNGG	2 cut(s)	50, 554
Bme18I	GGWCC	3 cut(s)	161, 339, 357
BmeRI	GACNNNNNGTC	1 cut(s)	337
BmeT110I	CYCGRG	1 cut(s)	377
BmgT120I	GGNCC	4 cut(s)	161, 339, 357, 373
BmiI	GGNNCC	6 cut(s)	324, 358, 359, 375, 591, 622
BmrFI	CCNGG	2 cut(s)	50, 554
BmsI	GCATC	4 cut(s)	86, 127, 182, 649
Bpu10I	CCTNAGC	1 cut(s)	738
Bpu1102I	GCTNAGC	1 cut(s)	186
BpuEI	CTTGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	50
BsaBI	GATNNNNATC	1 cut(s)	141
BsaHI	GRCGYC	1 cut(s)	534
BsaJI	CCNNGG	1 cut(s)	236
BsaWI	WCCGGW	2 cut(s)	31, 776
Bsc4I	CCNNNNNNNGG	3 cut(s)	354, 473, 559
Bse118I	RCCGGY	1 cut(s)	623
Bse3DI	GCAATG	2 cut(s)	302, 508
Bse8I	GATNNNNATC	1 cut(s)	141
BseBI	CCWGG	1 cut(s)	554
BseDI	CCNNGG	1 cut(s)	236
BseGI	GGATG	1 cut(s)	640
BseJI	GATNNNNATC	1 cut(s)	141
BseLI	CCNNNNNNNGG	3 cut(s)	354, 473, 559
BseMI	GCAATG	2 cut(s)	302, 508
BseMII	CTCAG	4 cut(s)	106, 177, 603, 752
BseRI	GAGGAG	2 cut(s)	199, 633
BseSI	GKGCMC	2 cut(s)	611, 670
BseXI	GCAGC	3 cut(s)	238, 394, 649
BsgI	GTGCAG	1 cut(s)	533
BshFI	GGCC	1 cut(s)	374
BsiHKAI	GWGCWC	1 cut(s)	786
BsiHKCI	CYCGRG	1 cut(s)	377
BsiSI	CCGG	4 cut(s)	32, 49, 624, 777
BslFI	GGGAC	1 cut(s)	370
BslI	CCNNNNNNNGG	3 cut(s)	354, 473, 559
BsmAI	GTCTC	3 cut(s)	93, 226, 387
BsmBI	CGTCTC	1 cut(s)	387
BsmFI	GGGAC	1 cut(s)	370
BsnI	GGCC	1 cut(s)	374
BsoBI	CYCGRG	1 cut(s)	377
Bsp1286I	GDGCHC	4 cut(s)	192, 611, 670, 786
Bsp1407I	TGTACA	1 cut(s)	167
Bsp143I	GATC	5 cut(s)	22, 142, 299, 381, 562
Bsp1720I	GCTNAGC	1 cut(s)	186
BspACI	CCGC	2 cut(s)	320, 676
BspANI	GGCC	1 cut(s)	374
BspCNI	CTCAG	4 cut(s)	105, 178, 604, 751
BspLI	GGNNCC	6 cut(s)	324, 358, 359, 375, 591, 622
BspMI	ACCTGC	1 cut(s)	256
BspPI	GGATC	3 cut(s)	30, 137, 570
BsrDI	GCAATG	2 cut(s)	302, 508
BsrFI	RCCGGY	1 cut(s)	623
BsrGI	TGTACA	1 cut(s)	167
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	1 cut(s)	236
BssMI	GATC	5 cut(s)	22, 142, 299, 381, 562
BssNI	GRCGYC	1 cut(s)	534
BssSI	CACGAG	1 cut(s)	362
BssT1I	CCWWGG	1 cut(s)	236
Bst2BI	CACGAG	1 cut(s)	362
Bst2UI	CCWGG	1 cut(s)	554
Bst4CI	ACNGT	2 cut(s)	339, 398
BstACI	GRCGYC	1 cut(s)	534
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstAUI	TGTACA	1 cut(s)	167
BstC8I	GCNNGC	1 cut(s)	735
BstDEI	CTNAG	5 cut(s)	92, 186, 521, 612, 738
BstF5I	GGATG	1 cut(s)	640
BstHHI	GCGC	1 cut(s)	185
BstKTI	GATC	5 cut(s)	25, 145, 302, 384, 565
BstMAI	GTCTC	3 cut(s)	93, 226, 387
BstMBI	GATC	5 cut(s)	22, 142, 299, 381, 562
BstMWI	GCNNNNNNNGC	1 cut(s)	146
BstNI	CCWGG	1 cut(s)	554
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	2 cut(s)	48, 552
BstSLI	GKGCMC	2 cut(s)	611, 670
BstV1I	GCAGC	3 cut(s)	238, 394, 649
BstX2I	RGATCY	3 cut(s)	22, 142, 562
BstYI	RGATCY	3 cut(s)	22, 142, 562
BsuRI	GGCC	1 cut(s)	374
BtsCI	GGATG	1 cut(s)	640
BtsIMutI	CAGTG	1 cut(s)	609
BveI	ACCTGC	1 cut(s)	256
Cac8I	GCNNGC	1 cut(s)	735
CaiI	CAGNNNCTG	1 cut(s)	146
CfoI	GCGC	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	4 cut(s)	161, 339, 357, 373
CseI	GACGC	2 cut(s)	341, 542
Csp6I	GTAC	3 cut(s)	168, 367, 757
CviAII	CATG	5 cut(s)	132, 165, 225, 401, 730
CviQI	GTAC	3 cut(s)	168, 367, 757
DdeI	CTNAG	5 cut(s)	92, 186, 521, 612, 738
DpnI	GATC	5 cut(s)	24, 144, 301, 383, 564
DpnII	GATC	5 cut(s)	22, 142, 299, 381, 562
DriI	GACNNNNNGTC	1 cut(s)	337
Eam1105I	GACNNNNNGTC	1 cut(s)	337
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	236
Eco24I	GRGCYC	1 cut(s)	192
Eco47I	GGWCC	3 cut(s)	161, 339, 357
Eco57I	CTGAAG	2 cut(s)	214, 738
Eco88I	CYCGRG	1 cut(s)	377
EcoO109I	RGGNCCY	1 cut(s)	357
EcoRII	CCWGG	1 cut(s)	552
EcoT14I	CCWWGG	1 cut(s)	236
EcoT38I	GRGCYC	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	236
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	5 cut(s)	135, 168, 228, 404, 733
FaiI	YATR	8 cut(s)	65, 133, 166, 226, 402, 454, 456, 731
FaqI	GGGAC	1 cut(s)	370
FatI	CATG	5 cut(s)	131, 164, 224, 400, 729
Fnu4HI	GCNGC	3 cut(s)	252, 408, 638
FokI	GGATG	1 cut(s)	627
FriOI	GRGCYC	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	252, 408, 638
FspBI	CTAG	4 cut(s)	237, 327, 558, 788
GlaI	GCGC	1 cut(s)	184
GluI	GCNGC	3 cut(s)	252, 408, 638
HaeIII	GGCC	1 cut(s)	374
HapII	CCGG	4 cut(s)	32, 49, 624, 777
HgaI	GACGC	2 cut(s)	341, 542
HhaI	GCGC	1 cut(s)	185
Hin1I	GRCGYC	1 cut(s)	534
Hin1II	CATG	5 cut(s)	135, 168, 228, 404, 733
Hin6I	GCGC	1 cut(s)	183
HinP1I	GCGC	1 cut(s)	183
HinfI	GANTC	4 cut(s)	432, 525, 598, 713
HpaII	CCGG	4 cut(s)	32, 49, 624, 777
HphI	GGTGA	2 cut(s)	117, 638
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	5 cut(s)	27, 95, 299, 572, 718
Hpy188III	TCNNGA	3 cut(s)	20, 725, 740
Hpy8I	GTNNAC	1 cut(s)	423
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	3 cut(s)	138, 202, 647
HpyCH4III	ACNGT	2 cut(s)	339, 398
HpyCH4IV	ACGT	1 cut(s)	425
HpyCH4V	TGCA	3 cut(s)	140, 198, 514
HpyF10VI	GCNNNNNNNGC	1 cut(s)	146
HpyF3I	CTNAG	5 cut(s)	92, 186, 521, 612, 738
HpySE526I	ACGT	1 cut(s)	425
Hsp92I	GRCGYC	1 cut(s)	534
Hsp92II	CATG	5 cut(s)	135, 168, 228, 404, 733
HspAI	GCGC	1 cut(s)	183
KflI	GGGWCCC	1 cut(s)	357
Kzo9I	GATC	5 cut(s)	22, 142, 299, 381, 562
LmnI	GCTCC	3 cut(s)	322, 589, 620
Lsp1109I	GCAGC	3 cut(s)	238, 394, 649
LweI	GCATC	4 cut(s)	86, 127, 182, 649
MaeI	CTAG	4 cut(s)	237, 327, 558, 788
MaeII	ACGT	1 cut(s)	425
MaeIII	GTNAC	2 cut(s)	59, 329
MalI	GATC	5 cut(s)	24, 144, 301, 383, 564
MboI	GATC	5 cut(s)	22, 142, 299, 381, 562
MboII	GAAGA	1 cut(s)	65
MflI	RGATCY	3 cut(s)	22, 142, 562
MhlI	GDGCHC	4 cut(s)	192, 611, 670, 786
MluCI	AATT	2 cut(s)	343, 661
MlyI	GAGTC	1 cut(s)	707
MmeI	TCCRAC	1 cut(s)	134
MnlI	CCTC	5 cut(s)	217, 220, 481, 566, 611
MroXI	GAANNNNTTC	1 cut(s)	39
MseI	TTAA	3 cut(s)	471, 480, 633
MslI	CAYNNNNRTG	1 cut(s)	130
MspA1I	CMGCKG	1 cut(s)	678
MspI	CCGG	4 cut(s)	32, 49, 624, 777
MspR9I	CCNGG	2 cut(s)	50, 554
MvaI	CCWGG	1 cut(s)	554
MwoI	GCNNNNNNNGC	1 cut(s)	146
NciI	CCSGG	1 cut(s)	50
NdeII	GATC	5 cut(s)	22, 142, 299, 381, 562
NlaIII	CATG	5 cut(s)	135, 168, 228, 404, 733
NlaIV	GGNNCC	6 cut(s)	324, 358, 359, 375, 591, 622
NmeAIII	GCCGAG	1 cut(s)	778
NmuCI	GTSAC	2 cut(s)	59, 329
NspI	RCATGY	1 cut(s)	733
PcsI	WCGNNNNNNNCGW	1 cut(s)	750
PdmI	GAANNNNTTC	1 cut(s)	39
PfeI	GAWTC	3 cut(s)	432, 525, 598
PfoI	TCCNGGA	1 cut(s)	48
PkrI	GCNGC	3 cut(s)	253, 409, 639
PleI	GAGTC	1 cut(s)	707
PpsI	GAGTC	1 cut(s)	707
PpuMI	RGGWCCY	1 cut(s)	357
Psp5II	RGGWCCY	1 cut(s)	357
Psp6I	CCWGG	1 cut(s)	552
PspGI	CCWGG	1 cut(s)	552
PspN4I	GGNNCC	6 cut(s)	324, 358, 359, 375, 591, 622
PspPI	GGNCC	4 cut(s)	161, 339, 357, 373
PspPPI	RGGWCCY	1 cut(s)	357
PsrI	GAACNNNNNNTAC	2 cut(s)	749, 781
PstNI	CAGNNNCTG	1 cut(s)	146
PsuI	RGATCY	3 cut(s)	22, 142, 562
RsaI	GTAC	3 cut(s)	169, 368, 758
RsaNI	GTAC	3 cut(s)	168, 367, 757
RseI	CAYNNNNRTG	1 cut(s)	130
SaqAI	TTAA	3 cut(s)	471, 480, 633
SatI	GCNGC	3 cut(s)	252, 408, 638
Sau3AI	GATC	5 cut(s)	22, 142, 299, 381, 562
Sau96I	GGNCC	4 cut(s)	161, 339, 357, 373
ScaI	AGTACT	2 cut(s)	368, 758
SchI	GAGTC	1 cut(s)	707
ScrFI	CCNGG	2 cut(s)	50, 554
SduI	GDGCHC	4 cut(s)	192, 611, 670, 786
SfaNI	GCATC	4 cut(s)	86, 127, 182, 649
SinI	GGWCC	3 cut(s)	161, 339, 357
SmiMI	CAYNNNNRTG	1 cut(s)	130
SmlI	CTYRAG	1 cut(s)	291
SmoI	CTYRAG	1 cut(s)	291
Sse9I	AATT	2 cut(s)	343, 661
SsiI	CCGC	2 cut(s)	320, 676
SspMI	CTAG	4 cut(s)	237, 327, 558, 788
StyD4I	CCNGG	2 cut(s)	48, 552
StyI	CCWWGG	1 cut(s)	236
TaaI	ACNGT	2 cut(s)	339, 398
TaiI	ACGT	1 cut(s)	428
TasI	AATT	2 cut(s)	343, 661
TatI	WGTACW	3 cut(s)	167, 366, 756
TfiI	GAWTC	3 cut(s)	432, 525, 598
Tru1I	TTAA	3 cut(s)	471, 480, 633
Tru9I	TTAA	3 cut(s)	471, 480, 633
TscAI	CASTG	1 cut(s)	616
TseFI	GTSAC	2 cut(s)	59, 329
TseI	GCWGC	3 cut(s)	251, 407, 637
Tsp45I	GTSAC	2 cut(s)	59, 329
TspDTI	ATGAA	1 cut(s)	120
TspGWI	ACGGA	1 cut(s)	633
TspRI	CASTG	1 cut(s)	616
VpaK11BI	GGWCC	3 cut(s)	161, 339, 357
XceI	RCATGY	1 cut(s)	733
XmaJI	CCTAGG	1 cut(s)	236
XmnI	GAANNNNTTC	1 cut(s)	39
XspI	CTAG	4 cut(s)	237, 327, 558, 788
ZrmI	AGTACT	2 cut(s)	368, 758

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.