Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8433985.1

Orthogroup ID

OG0005763

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1190

Gene Structure 1190 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8433985.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

atgggttcctttgcgggtacttctgagattgttgaagcgacagacgagcccagttcaggtcaatattctcgtggaacatatcgaccaaatacaggtttgggtgagaatgataggaaccttcctgcacttaaactaggatcatccagggattctatagaagatgatattaataagctttttgcggcaatccatctcaaaacttcatccaagggttcagatcattcgaagcaagtaggtactagccctttgaataaaaatgccttaaagaagccaattacgatgggtgtgtctcactcaccaaggtttgggacttctgagccagcgactctaaagcaggcattgagggagctgtctattaccaaggcatcggaaatggctgctatgaaacggttaacaaagttgacaagtccttcaagagcctccgaagctgggaggatcaagacattgtacaatgcagttgttgttcaagccactcaatgtggtccttcctcacatgaagacaggggaaatatagttgaaatatctctggtcccagaagaaagcacatcatattctcgtcagaagatgcctgatcatcctccaatgcccaagacgaagtcatcaagccagagtgcacattcttctcctcgatttgtaaatgggacaacaggaactagtgctgggagcacagcagtacaaaatgaaagtgcttccacgttgaggacggttggggtacaaacaataaagtcggagctgggtctggaagataaaaatgaatctggtagcgaccttatttcagaagttgctgaaaatttacctgccaaagctgtttcgaagacaacattaaaggcagagctggggaagaaagagaaacataaatctacaaaggaaaataattcagtatctgctcgaaatagtcctaccaaaaccaagttagcaaataaggtctcagcagcaaaaccggggcgaaaagtcaaggtgcatggagtgccttcttcatctagcttcgtcagtggaaatgtggcaagcaagttttccagaaacaccctccgcagtgtcaaacaatccagcaggaataaaagtattctaaataagaagcaaaaacaagattcaatgtctcttgcctgcaaatctagtaagaataatgaagctgatgctgatattgatgcatgtacaagtcagctg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

388

Amino Acids

41.29

Weight (kDa)

9.81

Isoelectric Point (pI)

55.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36350 AT3G52890 AT3G52890 AT3G52890 AT3G52890 AT5G03640 AT5G03640
fragaria_vesca	FvH4_6g18180
malus_domestica	MD12G1021500.v1.1 MD14G1018600.v1.1
prunus_persica	Prupe.7G114900_v2.0.a1
pyrus_communis	pycom12g02020 pycom14g01780
rosa_chinensis	RchiOBHm_Chr3g0472511
rosa_laevigata	RLG00000024074
rosa_multiflora	Rmu_co8030082.1_g000001 Rmu_co8221566.1_g000001 Rmu_co8433985.1_g000001 Rmu_sc0011581.1_g000002 Rmu_sc0020040.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408870
rosa_rugosa	Rorug03G0126100
rosa_samantha	Rh3AG178000 Rh3BG203900 Rh3CG194300 Rh3CG201400 Rh3DG171000
rosa_wichuraiana	Rw3G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	805
AccB7I	CCANNNNNTGG	1 cut(s)	305
AciI	CCGC	3 cut(s)	14, 182, 1030
AclWI	GGATC	2 cut(s)	145, 443
AcsI	RAATTY	1 cut(s)	790
AfaI	GTAC	6 cut(s)	19, 238, 449, 675, 714, 1153
AfiI	CCNNNNNNNGG	5 cut(s)	56, 92, 305, 429, 699
AgsI	TTSAA	6 cut(s)	35, 250, 414, 467, 518, 1092
AhlI	ACTAGT	1 cut(s)	653
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	9 cut(s)	175, 349, 428, 733, 806, 835, 984, 1130, 1162
AluI	AGCT	9 cut(s)	175, 349, 428, 733, 806, 835, 984, 1130, 1162
Alw21I	GWGCWC	2 cut(s)	616, 668
Alw26I	GTCTC	3 cut(s)	294, 931, 1101
Alw44I	GTGCAC	1 cut(s)	612
AlwI	GGATC	2 cut(s)	145, 443
AlwNI	CAGNNNCTG	1 cut(s)	884
ApaLI	GTGCAC	1 cut(s)	612
ApeKI	GCWGC	2 cut(s)	377, 932
ApoI	RAATTY	1 cut(s)	790
AseI	ATTAAT	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	482, 529
AsuC2I	CCSGG	1 cut(s)	942
AsuHPI	GGTGA	2 cut(s)	113, 288
AsuII	TTCGAA	2 cut(s)	224, 812
AvaII	GGWCC	2 cut(s)	482, 529
BaeGI	GKGCMC	1 cut(s)	616
BanII	GRGCYC	1 cut(s)	51
BauI	CACGAG	1 cut(s)	69
BbsI	GAAGAC	2 cut(s)	504, 821
Bbv12I	GWGCWC	2 cut(s)	616, 668
BbvI	GCAGC	2 cut(s)	364, 944
BccI	CCATC	2 cut(s)	198, 274
BciT130I	CCWGG	1 cut(s)	145
BclI	TGATCA	1 cut(s)	571
BcnI	CCSGG	1 cut(s)	942
BcoDI	GTCTC	3 cut(s)	294, 931, 1101
BcuI	ACTAGT	1 cut(s)	653
BfaI	CTAG	5 cut(s)	134, 240, 654, 981, 1113
BfmI	CTRYAG	1 cut(s)	153
BfuAI	ACCTGC	1 cut(s)	805
BisI	GCNGC	3 cut(s)	183, 378, 933
BlsI	GCNGC	3 cut(s)	184, 379, 934
Bme1390I	CCNGG	2 cut(s)	145, 942
Bme18I	GGWCC	2 cut(s)	482, 529
BmgT120I	GGNCC	2 cut(s)	482, 529
BmiI	GGNNCC	3 cut(s)	7, 116, 531
BmrFI	CCNGG	2 cut(s)	145, 942
BmrI	ACTGGG	1 cut(s)	45
BmsI	GCATC	4 cut(s)	374, 555, 1123, 1135
BmuI	ACTGGG	1 cut(s)	45
BpiI	GAAGAC	2 cut(s)	504, 821
Bpu14I	TTCGAA	2 cut(s)	224, 812
BpuMI	CCSGG	1 cut(s)	942
BsaI	GGTCTC	1 cut(s)	931
BsaJI	CCNNGG	5 cut(s)	144, 207, 299, 360, 941
Bsc4I	CCNNNNNNNGG	5 cut(s)	56, 92, 305, 429, 699
Bse1I	ACTGG	1 cut(s)	51
BseBI	CCWGG	1 cut(s)	145
BseDI	CCNNGG	5 cut(s)	144, 207, 299, 360, 941
BseGI	GGATG	3 cut(s)	140, 203, 574
BseLI	CCNNNNNNNGG	5 cut(s)	56, 92, 305, 429, 699
BseMII	CTCAG	3 cut(s)	15, 306, 942
BseNI	ACTGG	1 cut(s)	51
BseRI	GAGGAG	1 cut(s)	615
BseSI	GKGCMC	1 cut(s)	616
BseXI	GCAGC	2 cut(s)	364, 944
BseYI	CCCAGC	4 cut(s)	428, 659, 733, 835
BsgI	GTGCAG	1 cut(s)	108
BsiHKAI	GWGCWC	2 cut(s)	616, 668
BsiSI	CCGG	1 cut(s)	941
BslFI	GGGAC	3 cut(s)	322, 515, 655
BslI	CCNNNNNNNGG	5 cut(s)	56, 92, 305, 429, 699
BsmAI	GTCTC	3 cut(s)	294, 931, 1101
BsmFI	GGGAC	3 cut(s)	322, 515, 655
Bso31I	GGTCTC	1 cut(s)	931
Bsp119I	TTCGAA	2 cut(s)	224, 812
Bsp1286I	GDGCHC	3 cut(s)	51, 616, 668
Bsp1407I	TGTACA	2 cut(s)	447, 1151
Bsp143I	GATC	4 cut(s)	137, 217, 435, 571
BspACI	CCGC	3 cut(s)	14, 182, 1030
BspCNI	CTCAG	3 cut(s)	16, 307, 941
BspLI	GGNNCC	3 cut(s)	7, 116, 531
BspMI	ACCTGC	1 cut(s)	805
BspPI	GGATC	2 cut(s)	145, 443
BspT104I	TTCGAA	2 cut(s)	224, 812
BspTNI	GGTCTC	1 cut(s)	931
BsrGI	TGTACA	2 cut(s)	447, 1151
BsrI	ACTGG	1 cut(s)	51
BssECI	CCNNGG	5 cut(s)	144, 207, 299, 360, 941
BssMI	GATC	4 cut(s)	137, 217, 435, 571
BssSI	CACGAG	1 cut(s)	69
BssT1I	CCWWGG	3 cut(s)	207, 299, 360
Bst2BI	CACGAG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	390, 706
BstAPI	GCANNNNNTGC	1 cut(s)	967
BstAUI	TGTACA	2 cut(s)	447, 1151
BstBI	TTCGAA	2 cut(s)	224, 812
BstC8I	GCNNGC	4 cut(s)	321, 336, 1006, 1105
BstDEI	CTNAG	3 cut(s)	24, 315, 928
BstF5I	GGATG	3 cut(s)	140, 203, 574
BstKTI	GATC	4 cut(s)	140, 220, 438, 574
BstMAI	GTCTC	3 cut(s)	294, 931, 1101
BstMBI	GATC	4 cut(s)	137, 217, 435, 571
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 967
BstNI	CCWGG	1 cut(s)	145
BstNSI	RCATGY	1 cut(s)	1152
BstSCI	CCNGG	2 cut(s)	143, 940
BstSFI	CTRYAG	1 cut(s)	153
BstSLI	GKGCMC	1 cut(s)	616
BstV1I	GCAGC	2 cut(s)	364, 944
BstV2I	GAAGAC	2 cut(s)	504, 821
BtsCI	GGATG	3 cut(s)	140, 203, 574
BtsI	GCAGTG	1 cut(s)	1039
BtsIMutI	CAGTG	2 cut(s)	997, 1039
BveI	ACCTGC	1 cut(s)	805
Cac8I	GCNNGC	4 cut(s)	321, 336, 1006, 1105
CaiI	CAGNNNCTG	1 cut(s)	884
Cfr13I	GGNCC	2 cut(s)	482, 529
Csp6I	GTAC	6 cut(s)	18, 237, 448, 674, 713, 1152
CviAII	CATG	3 cut(s)	494, 962, 1149
CviQI	GTAC	6 cut(s)	18, 237, 448, 674, 713, 1152
DdeI	CTNAG	3 cut(s)	24, 315, 928
DpnI	GATC	4 cut(s)	139, 219, 437, 573
DpnII	GATC	4 cut(s)	137, 217, 435, 571
Eco130I	CCWWGG	3 cut(s)	207, 299, 360
Eco24I	GRGCYC	1 cut(s)	51
Eco31I	GGTCTC	1 cut(s)	931
Eco47I	GGWCC	2 cut(s)	482, 529
EcoRII	CCWGG	1 cut(s)	143
EcoT14I	CCWWGG	3 cut(s)	207, 299, 360
EcoT22I	ATGCAT	1 cut(s)	1150
EcoT38I	GRGCYC	1 cut(s)	51
ErhI	CCWWGG	3 cut(s)	207, 299, 360
FaeI	CATG	3 cut(s)	497, 965, 1152
FaiI	YATR	9 cut(s)	79, 155, 383, 495, 512, 550, 855, 963, 1150
FaqI	GGGAC	3 cut(s)	322, 515, 655
FatI	CATG	3 cut(s)	493, 961, 1148
FauI	CCCGC	1 cut(s)	7
FbaI	TGATCA	1 cut(s)	571
Fnu4HI	GCNGC	3 cut(s)	183, 378, 933
FokI	GGATG	3 cut(s)	127, 190, 561
FriOI	GRGCYC	1 cut(s)	51
Fsp4HI	GCNGC	3 cut(s)	183, 378, 933
FspBI	CTAG	5 cut(s)	134, 240, 654, 981, 1113
GluI	GCNGC	3 cut(s)	183, 378, 933
GsaI	CCCAGC	4 cut(s)	432, 663, 737, 839
HapII	CCGG	1 cut(s)	941
Hin1II	CATG	3 cut(s)	497, 965, 1152
HincII	GTYRAC	2 cut(s)	393, 402
HindII	GTYRAC	2 cut(s)	393, 402
HindIII	AAGCTT	1 cut(s)	173
HinfI	GANTC	4 cut(s)	149, 325, 755, 1088
HpaI	GTTAAC	1 cut(s)	393
HpaII	CCGG	1 cut(s)	941
HphI	GGTGA	2 cut(s)	113, 288
Hpy166II	GTNNAC	3 cut(s)	393, 402, 614
Hpy188I	TCNGA	8 cut(s)	25, 217, 316, 370, 424, 561, 730, 778
Hpy188III	TCNNGA	4 cut(s)	414, 439, 740, 1017
Hpy8I	GTNNAC	3 cut(s)	393, 402, 614
HpyAV	CCTTC	4 cut(s)	128, 420, 495, 981
HpyCH4III	ACNGT	2 cut(s)	390, 706
HpyCH4IV	ACGT	1 cut(s)	695
HpyCH4V	TGCA	6 cut(s)	125, 455, 614, 961, 1107, 1148
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 967
HpyF3I	CTNAG	3 cut(s)	24, 315, 928
HpySE526I	ACGT	1 cut(s)	695
Hsp92II	CATG	3 cut(s)	497, 965, 1152
Ksp22I	TGATCA	1 cut(s)	571
KspAI	GTTAAC	1 cut(s)	393
Kzo9I	GATC	4 cut(s)	137, 217, 435, 571
LmnI	GCTCC	3 cut(s)	346, 663, 730
Lsp1109I	GCAGC	2 cut(s)	364, 944
LweI	GCATC	4 cut(s)	374, 555, 1123, 1135
MaeI	CTAG	5 cut(s)	134, 240, 654, 981, 1113
MaeII	ACGT	1 cut(s)	695
MalI	GATC	4 cut(s)	139, 219, 437, 573
MboI	GATC	4 cut(s)	137, 217, 435, 571
MboII	GAAGA	9 cut(s)	170, 509, 548, 574, 612, 755, 826, 853, 966
MhlI	GDGCHC	3 cut(s)	51, 616, 668
MluCI	AATT	3 cut(s)	273, 790, 874
MlyI	GAGTC	1 cut(s)	319
MmeI	TCCRAC	1 cut(s)	708
MnlI	CCTC	8 cut(s)	336, 426, 430, 499, 588, 636, 693, 1037
Mph1103I	ATGCAT	1 cut(s)	1150
MseI	TTAA	5 cut(s)	129, 168, 263, 392, 824
MspA1I	CMGCKG	1 cut(s)	1162
MspI	CCGG	1 cut(s)	941
MspR9I	CCNGG	2 cut(s)	145, 942
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	2 cut(s)	425, 967
NciI	CCSGG	1 cut(s)	942
NdeII	GATC	4 cut(s)	137, 217, 435, 571
NlaIII	CATG	3 cut(s)	497, 965, 1152
NlaIV	GGNNCC	3 cut(s)	7, 116, 531
NsiI	ATGCAT	1 cut(s)	1150
NspI	RCATGY	1 cut(s)	1152
NspV	TTCGAA	2 cut(s)	224, 812
PfeI	GAWTC	3 cut(s)	149, 755, 1088
PflFI	GACNNNGTC	1 cut(s)	595
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	184, 379, 934
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PshBI	ATTAAT	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	143
PspFI	CCCAGC	4 cut(s)	428, 659, 733, 835
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	3 cut(s)	7, 116, 531
PspPI	GGNCC	2 cut(s)	482, 529
PstNI	CAGNNNCTG	1 cut(s)	884
PsyI	GACNNNGTC	1 cut(s)	595
PvuII	CAGCTG	1 cut(s)	1162
RsaI	GTAC	6 cut(s)	19, 238, 449, 675, 714, 1153
RsaNI	GTAC	6 cut(s)	18, 237, 448, 674, 713, 1152
SaqAI	TTAA	5 cut(s)	129, 168, 263, 392, 824
SatI	GCNGC	3 cut(s)	183, 378, 933
Sau3AI	GATC	4 cut(s)	137, 217, 435, 571
Sau96I	GGNCC	2 cut(s)	482, 529
SchI	GAGTC	1 cut(s)	319
ScrFI	CCNGG	2 cut(s)	145, 942
SduI	GDGCHC	3 cut(s)	51, 616, 668
SfaNI	GCATC	4 cut(s)	374, 555, 1123, 1135
SfcI	CTRYAG	1 cut(s)	153
SfuI	TTCGAA	2 cut(s)	224, 812
SinI	GGWCC	2 cut(s)	482, 529
SpeI	ACTAGT	1 cut(s)	653
Sse9I	AATT	3 cut(s)	273, 790, 874
SsiI	CCGC	3 cut(s)	14, 182, 1030
SspI	AATATT	1 cut(s)	65
SspMI	CTAG	5 cut(s)	134, 240, 654, 981, 1113
StyD4I	CCNGG	2 cut(s)	143, 940
StyI	CCWWGG	3 cut(s)	207, 299, 360
TaaI	ACNGT	2 cut(s)	390, 706
TaiI	ACGT	1 cut(s)	698
TaqI	TCGA	5 cut(s)	82, 224, 628, 812, 889
TasI	AATT	3 cut(s)	273, 790, 874
TatI	WGTACW	3 cut(s)	447, 673, 1151
TauI	GCSGC	1 cut(s)	185
TfiI	GAWTC	3 cut(s)	149, 755, 1088
Tru1I	TTAA	5 cut(s)	129, 168, 263, 392, 824
Tru9I	TTAA	5 cut(s)	129, 168, 263, 392, 824
TscAI	CASTG	2 cut(s)	997, 1039
TseI	GCWGC	2 cut(s)	377, 932
TspDTI	ATGAA	7 cut(s)	192, 398, 510, 696, 768, 966, 1140
TspRI	CASTG	2 cut(s)	997, 1039
Tth111I	GACNNNGTC	1 cut(s)	595
Van91I	CCANNNNNTGG	1 cut(s)	305
VneI	GTGCAC	1 cut(s)	612
VpaK11BI	GGWCC	2 cut(s)	482, 529
VspI	ATTAAT	1 cut(s)	168
XapI	RAATTY	1 cut(s)	790
XceI	RCATGY	1 cut(s)	1152
XspI	CTAG	5 cut(s)	134, 240, 654, 981, 1113
Zsp2I	ATGCAT	1 cut(s)	1150

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.