Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8030082.1

Orthogroup ID

OG0005763

Physical Location & Seq

Genomic Coordinates Reverse (-)

70 .. 546

Gene Structure 477 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8030082.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 477 bp

gacgcacggtccaattcctttgttgggacccacgagtacttggcccccgagatcatcaaaggagacggtcatggtgctgctgttgattggtggacgtttggaatctttctttacgagcttctatatggcagaacaccatttaagggtgttaataacgaggacacattaggcaatgtggtcgtgcagagcctaagattccccgacgccccgattgtgagcttccaggctagggatctcatcagagggctgttagtaaaggagccagagaatcggttgggcactgagagaggagccggtgagattaagcagcatccgttctttgaaggtttgaattgggcactaatccgctgtgctgttccacccgaactgcctgatttttgcgactctgaagttccagacatgcctgctcaggacgataacgccgagtacttggagttcaaaactaccggagagcacctagagtttgagttattttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

158

Amino Acids

17.8

Weight (kDa)

4.53

Isoelectric Point (pI)

28.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005763)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36350 AT3G52890 AT3G52890 AT3G52890 AT3G52890 AT5G03640 AT5G03640
fragaria_vesca	FvH4_6g18180
malus_domestica	MD12G1021500.v1.1 MD14G1018600.v1.1
prunus_persica	Prupe.7G114900_v2.0.a1
pyrus_communis	pycom12g02020 pycom14g01780
rosa_chinensis	RchiOBHm_Chr3g0472511
rosa_laevigata	RLG00000024074
rosa_multiflora	Rmu_co8030082.1_g000001 Rmu_co8221566.1_g000001 Rmu_co8433985.1_g000001 Rmu_sc0011581.1_g000002 Rmu_sc0020040.1_g000002
rosa_roxburghii	Rroxscaffold_6G00408870
rosa_rugosa	Rorug03G0126100
rosa_samantha	Rh3AG178000 Rh3BG203900 Rh3CG194300 Rh3CG201400 Rh3DG171000
rosa_wichuraiana	Rw3G016360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	346
AclWI	GGATC	1 cut(s)	240
AcuI	CTGAAG	1 cut(s)	408
AcyI	GRCGYC	1 cut(s)	204
AfaI	GTAC	2 cut(s)	38, 428
AfiI	CCNNNNNNNGG	3 cut(s)	24, 143, 229
AgsI	TTSAA	3 cut(s)	323, 331, 439
AhdI	GACNNNNNGTC	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	222
AluBI	AGCT	2 cut(s)	118, 219
AluI	AGCT	2 cut(s)	118, 219
Alw21I	GWGCWC	1 cut(s)	456
Alw26I	GTCTC	1 cut(s)	57
AlwI	GGATC	1 cut(s)	240
Ama87I	CYCGRG	1 cut(s)	47
AoxI	GGCC	1 cut(s)	42
ApeKI	GCWGC	2 cut(s)	77, 307
AspS9I	GGNCC	3 cut(s)	9, 27, 43
AsuHPI	GGTGA	1 cut(s)	308
AvaI	CYCGRG	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	9, 27
BaeGI	GKGCMC	2 cut(s)	281, 340
BauI	CACGAG	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	456
BbvI	GCAGC	2 cut(s)	64, 319
BcgI	CGANNNNNNTGC	2 cut(s)	160, 194
BciT130I	CCWGG	1 cut(s)	224
BcoDI	GTCTC	1 cut(s)	57
BfaI	CTAG	2 cut(s)	228, 458
BisI	GCNGC	2 cut(s)	78, 308
BlsI	GCNGC	2 cut(s)	79, 309
BmcAI	AGTACT	2 cut(s)	38, 428
Bme1390I	CCNGG	1 cut(s)	224
Bme18I	GGWCC	2 cut(s)	9, 27
BmeRI	GACNNNNNGTC	1 cut(s)	7
BmeT110I	CYCGRG	1 cut(s)	47
BmgT120I	GGNCC	3 cut(s)	9, 27, 43
BmiI	GGNNCC	5 cut(s)	28, 29, 45, 261, 292
BmrFI	CCNGG	1 cut(s)	224
BmsI	GCATC	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	408
BsaHI	GRCGYC	1 cut(s)	204
BsaWI	WCCGGW	1 cut(s)	446
Bsc4I	CCNNNNNNNGG	3 cut(s)	24, 143, 229
Bse118I	RCCGGY	1 cut(s)	293
Bse3DI	GCAATG	1 cut(s)	178
BseBI	CCWGG	1 cut(s)	224
BseGI	GGATG	1 cut(s)	310
BseLI	CCNNNNNNNGG	3 cut(s)	24, 143, 229
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	273, 422
BseRI	GAGGAG	1 cut(s)	303
BseSI	GKGCMC	2 cut(s)	281, 340
BseXI	GCAGC	2 cut(s)	64, 319
BsgI	GTGCAG	1 cut(s)	203
BshFI	GGCC	1 cut(s)	44
BsiHKAI	GWGCWC	1 cut(s)	456
BsiHKCI	CYCGRG	1 cut(s)	47
BsiSI	CCGG	2 cut(s)	294, 447
BslFI	GGGAC	1 cut(s)	40
BslI	CCNNNNNNNGG	3 cut(s)	24, 143, 229
BsmAI	GTCTC	1 cut(s)	57
BsmBI	CGTCTC	1 cut(s)	57
BsmFI	GGGAC	1 cut(s)	40
BsnI	GGCC	1 cut(s)	44
BsoBI	CYCGRG	1 cut(s)	47
Bsp1286I	GDGCHC	3 cut(s)	281, 340, 456
Bsp143I	GATC	2 cut(s)	51, 232
BspACI	CCGC	1 cut(s)	346
BspANI	GGCC	1 cut(s)	44
BspCNI	CTCAG	2 cut(s)	274, 421
BspLI	GGNNCC	5 cut(s)	28, 29, 45, 261, 292
BspPI	GGATC	1 cut(s)	240
BsrDI	GCAATG	1 cut(s)	178
BsrFI	RCCGGY	1 cut(s)	293
BssAI	RCCGGY	1 cut(s)	293
BssMI	GATC	2 cut(s)	51, 232
BssNI	GRCGYC	1 cut(s)	204
BssSI	CACGAG	1 cut(s)	32
Bst2BI	CACGAG	1 cut(s)	32
Bst2UI	CCWGG	1 cut(s)	224
Bst4CI	ACNGT	2 cut(s)	9, 68
BstACI	GRCGYC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	405
BstDEI	CTNAG	3 cut(s)	191, 282, 408
BstF5I	GGATG	1 cut(s)	310
BstKTI	GATC	2 cut(s)	54, 235
BstMAI	GTCTC	1 cut(s)	57
BstMBI	GATC	2 cut(s)	51, 232
BstNI	CCWGG	1 cut(s)	224
BstNSI	RCATGY	1 cut(s)	403
BstSCI	CCNGG	1 cut(s)	222
BstSLI	GKGCMC	2 cut(s)	281, 340
BstV1I	GCAGC	2 cut(s)	64, 319
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	44
BtsCI	GGATG	1 cut(s)	310
BtsIMutI	CAGTG	1 cut(s)	279
Cac8I	GCNNGC	1 cut(s)	405
Cfr10I	RCCGGY	1 cut(s)	293
Cfr13I	GGNCC	3 cut(s)	9, 27, 43
CseI	GACGC	2 cut(s)	11, 212
Csp6I	GTAC	2 cut(s)	37, 427
CviAII	CATG	2 cut(s)	71, 400
CviJI	RGCY	8 cut(s)	44, 118, 189, 219, 227, 247, 262, 293
CviKI_1	RGCY	8 cut(s)	44, 118, 189, 219, 227, 247, 262, 293
CviQI	GTAC	2 cut(s)	37, 427
DdeI	CTNAG	3 cut(s)	191, 282, 408
DpnI	GATC	2 cut(s)	53, 234
DpnII	GATC	2 cut(s)	51, 232
DriI	GACNNNNNGTC	1 cut(s)	7
Eam1105I	GACNNNNNGTC	1 cut(s)	7
Eco47I	GGWCC	2 cut(s)	9, 27
Eco57I	CTGAAG	1 cut(s)	408
Eco88I	CYCGRG	1 cut(s)	47
EcoO109I	RGGNCCY	1 cut(s)	27
EcoRII	CCWGG	1 cut(s)	222
Esp3I	CGTCTC	1 cut(s)	57
FaeI	CATG	2 cut(s)	74, 403
FaiI	YATR	4 cut(s)	72, 124, 126, 401
FaqI	GGGAC	1 cut(s)	40
FatI	CATG	2 cut(s)	70, 399
Fnu4HI	GCNGC	2 cut(s)	78, 308
FokI	GGATG	1 cut(s)	297
Fsp4HI	GCNGC	2 cut(s)	78, 308
FspBI	CTAG	2 cut(s)	228, 458
GluI	GCNGC	2 cut(s)	78, 308
HaeIII	GGCC	1 cut(s)	44
HapII	CCGG	2 cut(s)	294, 447
HgaI	GACGC	2 cut(s)	11, 212
Hin1I	GRCGYC	1 cut(s)	204
Hin1II	CATG	2 cut(s)	74, 403
HinfI	GANTC	4 cut(s)	102, 195, 268, 383
HpaII	CCGG	2 cut(s)	294, 447
HphI	GGTGA	1 cut(s)	308
Hpy166II	GTNNAC	1 cut(s)	93
Hpy188I	TCNGA	2 cut(s)	242, 388
Hpy188III	TCNNGA	2 cut(s)	395, 410
Hpy8I	GTNNAC	1 cut(s)	93
Hpy99I	CGWCG	1 cut(s)	206
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	2 cut(s)	9, 68
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	1 cut(s)	184
HpyF3I	CTNAG	3 cut(s)	191, 282, 408
HpySE526I	ACGT	1 cut(s)	95
Hsp92I	GRCGYC	1 cut(s)	204
Hsp92II	CATG	2 cut(s)	74, 403
KflI	GGGWCCC	1 cut(s)	27
Kzo9I	GATC	2 cut(s)	51, 232
LmnI	GCTCC	2 cut(s)	259, 290
LpnPI	CCDG	9 cut(s)	209, 236, 276, 307, 384, 395, 408, 417, 460
Lsp1109I	GCAGC	2 cut(s)	64, 319
LweI	GCATC	1 cut(s)	319
MaeI	CTAG	2 cut(s)	228, 458
MaeII	ACGT	1 cut(s)	95
MalI	GATC	2 cut(s)	53, 234
MboI	GATC	2 cut(s)	51, 232
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	3 cut(s)	281, 340, 456
MluCI	AATT	2 cut(s)	13, 331
MlyI	GAGTC	1 cut(s)	377
MnlI	CCTC	3 cut(s)	151, 236, 281
MseI	TTAA	3 cut(s)	141, 150, 303
MspA1I	CMGCKG	1 cut(s)	348
MspI	CCGG	2 cut(s)	294, 447
MspR9I	CCNGG	1 cut(s)	224
MvaI	CCWGG	1 cut(s)	224
NdeII	GATC	2 cut(s)	51, 232
NlaIII	CATG	2 cut(s)	74, 403
NlaIV	GGNNCC	5 cut(s)	28, 29, 45, 261, 292
NmeAIII	GCCGAG	1 cut(s)	448
NspI	RCATGY	1 cut(s)	403
PcsI	WCGNNNNNNNCGW	1 cut(s)	420
PfeI	GAWTC	3 cut(s)	102, 195, 268
PkrI	GCNGC	2 cut(s)	79, 309
PleI	GAGTC	1 cut(s)	377
PpsI	GAGTC	1 cut(s)	377
PpuMI	RGGWCCY	1 cut(s)	27
Psp5II	RGGWCCY	1 cut(s)	27
Psp6I	CCWGG	1 cut(s)	222
PspGI	CCWGG	1 cut(s)	222
PspN4I	GGNNCC	5 cut(s)	28, 29, 45, 261, 292
PspPI	GGNCC	3 cut(s)	9, 27, 43
PspPPI	RGGWCCY	1 cut(s)	27
PsrI	GAACNNNNNNTAC	2 cut(s)	419, 451
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	38, 428
RsaNI	GTAC	2 cut(s)	37, 427
SaqAI	TTAA	3 cut(s)	141, 150, 303
SatI	GCNGC	2 cut(s)	78, 308
Sau3AI	GATC	2 cut(s)	51, 232
Sau96I	GGNCC	3 cut(s)	9, 27, 43
ScaI	AGTACT	2 cut(s)	38, 428
SchI	GAGTC	1 cut(s)	377
ScrFI	CCNGG	1 cut(s)	224
SduI	GDGCHC	3 cut(s)	281, 340, 456
SetI	ASST	5 cut(s)	98, 120, 221, 328, 459
SfaNI	GCATC	1 cut(s)	319
SinI	GGWCC	2 cut(s)	9, 27
Sse9I	AATT	2 cut(s)	13, 331
SsiI	CCGC	1 cut(s)	346
SspMI	CTAG	2 cut(s)	228, 458
StyD4I	CCNGG	1 cut(s)	222
TaaI	ACNGT	2 cut(s)	9, 68
TaiI	ACGT	1 cut(s)	98
TasI	AATT	2 cut(s)	13, 331
TatI	WGTACW	2 cut(s)	36, 426
TfiI	GAWTC	3 cut(s)	102, 195, 268
Tru1I	TTAA	3 cut(s)	141, 150, 303
Tru9I	TTAA	3 cut(s)	141, 150, 303
TscAI	CASTG	1 cut(s)	286
TseI	GCWGC	2 cut(s)	77, 307
TspGWI	ACGGA	1 cut(s)	303
TspRI	CASTG	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	9, 27
XceI	RCATGY	1 cut(s)	403
XspI	CTAG	2 cut(s)	228, 458
ZrmI	AGTACT	2 cut(s)	38, 428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.