Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007468

Physical Location & Seq

Genomic Coordinates Reverse (-)

2504682 .. 2506616

Gene Structure 1935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGAACTTCAGCAAAGTGAGCGATCTGAGAACCTTCTTACAAGCAGATGAAGAGACAATGGAGAGGTTAAGGTTTCACGAGACTGGTATCTTTAAGAAGAAGCCAGCAGATTTGATGCAAATCTTCAAGGATGTACAATCTAAAGTGAGCGATGTTGTTCTCGGAAAGGAAAAGCCGGTGGACGAGTCAAATCCTGAATATGAGAAGTTGAAACACTACATCTTTGAGCTGGAAAACCACTTGGCTGAAGCCCAGAAACATGCATACCGTCTTGTCAAGAGGCACAGAGAGCTGGGACAGTCTCTAGCAGATTTTGGGAAAGCAGCCAAGCTCCTAGGAGCTTCCGAAGGTAATGCTCTTGGAAAGGCCTTTACCGAGCTTGGGGTGAAGTCAGAGACATTATCAATTAGGCTGCAAAAGGAGGCCCAACAACTGTTAATGAATTTTGAAGAACCCTTGAAAGATTATGTCCGTGCCGTGCAGTCTATTAAGGCCACAATAGCTGAGAGAGCAAATGCCTTCAGGCAACAGTGTGAACTTGCCGAAACAATTAAGTTGAAGGAGATAAATCTTGACAAACTCATGTTGACCAGATCGGACAGGGTGGGCGAAGCTGAGCACGAGTACAATGAGTTGAAGGCTGAGGGTGAGGAAGCAACCAGAAGATTTGAAACGATAGTGCGACGGATGAATGAAGAGATAGTTCACTTTCAGGAACAAAAAACAACAGACATGGGGGTTGCTTTCCATGAATTTGCCAAGGGACAGGCACGCTTGGCGAATAGTATTGCAGACGCTTGGCGAAGTCTCCTCCCTAAGCTCGAATCTTGCTCTCCGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005771 GO:0005794 GO:0005802 GO:0005829 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006892 GO:0006896 GO:0006897 GO:0006996 GO:0007034 GO:0007041 GO:0007275 GO:0008104 GO:0008150 GO:0008289 GO:0008333 GO:0009605 GO:0009606 GO:0009628 GO:0009629 GO:0009630 GO:0009958 GO:0009987 GO:0010008 GO:0010252 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0019898 GO:0022622 GO:0030904 GO:0031090 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032588 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0035091 GO:0042592 GO:0042886 GO:0043167 GO:0043168 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050896 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0065007 GO:0065008 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0072594 GO:0072665 GO:0072666 GO:0097708 GO:0098588 GO:0098657 GO:0098791 GO:0098796 GO:0098805 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04144 map04144

Pfam Domains

Protein Families

PX Vps5

Protein Analysis

281

Amino Acids

32.09

Weight (kDa)

6.29

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Vps5	PF09325	45 - 272	2.7e-23	Vps5 C terminal like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0007468)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G06140
fragaria_vesca	FvH4_6g19390 FvH4_6g19390 FvH4_6g19390
malus_domestica	MD12G1029600.v1.1 MD14G1029900.v1.1
prunus_persica	Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1 Prupe.7G102200_v2.0.a1
pyrus_communis	pycom12g02800 pycom14g02770
rosa_chinensis	RchiOBHm_Chr3g0474681
rosa_laevigata	RLG00000023902
rosa_multiflora	Rmu_sc0001126.1_g000005
rosa_roxburghii	Rroxscaffold_6G00406980
rosa_rugosa	Rorug03G0142300.1 Rorug03G0142400 Rorug03G0142500.1 Rorug03G0142600 Rorug03G0142700
rosa_samantha	Rh3AG192900 Rh3BG222800 Rh3CG217600 Rh3DG218700
rosa_wichuraiana	Rw3G017590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	442, 752
AcuI	CTGAAG	2 cut(s)	267, 505
AfaI	GTAC	2 cut(s)	135, 626
AfiI	CCNNNNNNNGG	1 cut(s)	381
AgsI	TTSAA	7 cut(s)	127, 211, 449, 460, 559, 637, 671
AluBI	AGCT	8 cut(s)	229, 292, 331, 341, 379, 503, 614, 820
AluI	AGCT	8 cut(s)	229, 292, 331, 341, 379, 503, 614, 820
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	5 cut(s)	47, 74, 306, 389, 812
AoxI	GGCC	3 cut(s)	366, 423, 492
ApeKI	GCWGC	2 cut(s)	323, 412
ApoI	RAATTY	2 cut(s)	442, 752
AspA2I	CCTAGG	1 cut(s)	334
AspS9I	GGNCC	1 cut(s)	424
AsuHPI	GGTGA	2 cut(s)	397, 659
AvrII	CCTAGG	1 cut(s)	334
BauI	CACGAG	2 cut(s)	77, 620
Bbv12I	GWGCWC	1 cut(s)	621
BbvCI	CCTCAGC	1 cut(s)	642
BbvI	GCAGC	2 cut(s)	335, 399
BceAI	ACGGC	1 cut(s)	461
BcgI	CGANNNNNNTGC	2 cut(s)	335, 369
BcoDI	GTCTC	5 cut(s)	47, 74, 306, 389, 812
BfaI	CTAG	2 cut(s)	305, 335
BisI	GCNGC	2 cut(s)	324, 413
BlnI	CCTAGG	1 cut(s)	334
BlpI	GCTNAGC	1 cut(s)	615
BlsI	GCNGC	2 cut(s)	325, 414
BmgT120I	GGNCC	1 cut(s)	424
BmsI	GCATC	1 cut(s)	105
Bpu10I	CCTNAGC	2 cut(s)	642, 816
Bpu1102I	GCTNAGC	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	119
BsaJI	CCNNGG	2 cut(s)	334, 759
Bsc4I	CCNNNNNNNGG	1 cut(s)	381
Bse118I	RCCGGY	1 cut(s)	175
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	119
BseDI	CCNNGG	2 cut(s)	334, 759
BseGI	GGATG	2 cut(s)	136, 693
BseJI	GATNNNNATC	1 cut(s)	119
BseLI	CCNNNNNNNGG	1 cut(s)	381
BseMII	CTCAG	4 cut(s)	17, 495, 606, 633
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	2 cut(s)	335, 399
BseYI	CCCAGC	1 cut(s)	292
BsgI	GTGCAG	1 cut(s)	500
BshFI	GGCC	3 cut(s)	368, 425, 494
BsiHKAI	GWGCWC	1 cut(s)	621
BsiSI	CCGG	2 cut(s)	176, 836
BslFI	GGGAC	2 cut(s)	309, 777
BslI	CCNNNNNNNGG	1 cut(s)	381
BsmAI	GTCTC	5 cut(s)	47, 74, 306, 389, 812
BsmFI	GGGAC	2 cut(s)	309, 777
BsnI	GGCC	3 cut(s)	368, 425, 494
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp1407I	TGTACA	1 cut(s)	133
Bsp143I	GATC	2 cut(s)	22, 593
Bsp1720I	GCTNAGC	1 cut(s)	615
BspANI	GGCC	3 cut(s)	368, 425, 494
BspCNI	CTCAG	4 cut(s)	18, 496, 607, 634
BsrFI	RCCGGY	1 cut(s)	175
BsrGI	TGTACA	1 cut(s)	133
BsrI	ACTGG	1 cut(s)	88
BssAI	RCCGGY	1 cut(s)	175
BssECI	CCNNGG	2 cut(s)	334, 759
BssMI	GATC	2 cut(s)	22, 593
BssSI	CACGAG	2 cut(s)	77, 620
BssT1I	CCWWGG	2 cut(s)	334, 759
Bst2BI	CACGAG	2 cut(s)	77, 620
Bst4CI	ACNGT	4 cut(s)	269, 300, 435, 531
Bst6I	CTCTTC	2 cut(s)	45, 690
BstAUI	TGTACA	1 cut(s)	133
BstC8I	GCNNGC	2 cut(s)	105, 772
BstDEI	CTNAG	6 cut(s)	26, 504, 615, 642, 816, 840
BstF5I	GGATG	2 cut(s)	136, 693
BstKTI	GATC	2 cut(s)	25, 596
BstMAI	GTCTC	5 cut(s)	47, 74, 306, 389, 812
BstMBI	GATC	2 cut(s)	22, 593
BstMWI	GCNNNNNNNGC	5 cut(s)	18, 289, 500, 509, 776
BstNSI	RCATGY	1 cut(s)	263
BstV1I	GCAGC	2 cut(s)	335, 399
BsuRI	GGCC	3 cut(s)	368, 425, 494
BtgZI	GCGATG	1 cut(s)	165
BtsCI	GGATG	2 cut(s)	136, 693
BtsIMutI	CAGTG	1 cut(s)	536
Cac8I	GCNNGC	2 cut(s)	105, 772
Cfr10I	RCCGGY	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	424
CseI	GACGC	1 cut(s)	803
Csp6I	GTAC	2 cut(s)	134, 625
CviAII	CATG	4 cut(s)	260, 583, 733, 749
CviQI	GTAC	2 cut(s)	134, 625
DdeI	CTNAG	6 cut(s)	26, 504, 615, 642, 816, 840
DpnI	GATC	2 cut(s)	24, 595
DpnII	GATC	2 cut(s)	22, 593
Eam1104I	CTCTTC	2 cut(s)	45, 690
EarI	CTCTTC	2 cut(s)	45, 690
Eco130I	CCWWGG	2 cut(s)	334, 759
Eco147I	AGGCCT	1 cut(s)	368
Eco57I	CTGAAG	2 cut(s)	267, 505
EcoT14I	CCWWGG	2 cut(s)	334, 759
EcoT22I	ATGCAT	1 cut(s)	265
ErhI	CCWWGG	2 cut(s)	334, 759
FaeI	CATG	4 cut(s)	263, 586, 736, 752
FaiI	YATR	7 cut(s)	201, 261, 265, 468, 584, 734, 750
FaqI	GGGAC	2 cut(s)	309, 777
FatI	CATG	4 cut(s)	259, 582, 732, 748
Fnu4HI	GCNGC	2 cut(s)	324, 413
FokI	GGATG	2 cut(s)	143, 700
Fsp4HI	GCNGC	2 cut(s)	324, 413
FspBI	CTAG	2 cut(s)	305, 335
GluI	GCNGC	2 cut(s)	324, 413
GsaI	CCCAGC	1 cut(s)	296
HaeIII	GGCC	3 cut(s)	368, 425, 494
HapII	CCGG	2 cut(s)	176, 836
HgaI	GACGC	1 cut(s)	803
Hin1II	CATG	4 cut(s)	263, 586, 736, 752
HincII	GTYRAC	1 cut(s)	588
HindII	GTYRAC	1 cut(s)	588
HinfI	GANTC	2 cut(s)	185, 824
HpaII	CCGG	2 cut(s)	176, 836
HphI	GGTGA	2 cut(s)	397, 659
Hpy166II	GTNNAC	4 cut(s)	181, 536, 588, 706
Hpy188I	TCNGA	5 cut(s)	27, 164, 346, 394, 598
Hpy188III	TCNNGA	5 cut(s)	77, 194, 277, 572, 713
Hpy8I	GTNNAC	4 cut(s)	181, 536, 588, 706
Hpy99I	CGWCG	1 cut(s)	687
HpyAV	CCTTC	5 cut(s)	43, 341, 529, 553, 631
HpyCH4III	ACNGT	4 cut(s)	269, 300, 435, 531
HpyCH4V	TGCA	5 cut(s)	118, 263, 415, 481, 791
HpyF10VI	GCNNNNNNNGC	5 cut(s)	18, 289, 500, 509, 776
HpyF3I	CTNAG	6 cut(s)	26, 504, 615, 642, 816, 840
Hsp92II	CATG	4 cut(s)	263, 586, 736, 752
Kzo9I	GATC	2 cut(s)	22, 593
LmnI	GCTCC	2 cut(s)	336, 338
Lsp1109I	GCAGC	2 cut(s)	335, 399
LweI	GCATC	1 cut(s)	105
MaeI	CTAG	2 cut(s)	305, 335
MalI	GATC	2 cut(s)	24, 595
MboI	GATC	2 cut(s)	22, 593
MboII	GAAGA	6 cut(s)	62, 109, 115, 461, 675, 707
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	4 cut(s)	405, 442, 549, 752
MlyI	GAGTC	1 cut(s)	194
MnlI	CCTC	6 cut(s)	57, 273, 415, 637, 643, 821
Mph1103I	ATGCAT	1 cut(s)	265
MseI	TTAA	5 cut(s)	68, 93, 437, 489, 552
MspI	CCGG	2 cut(s)	176, 836
MwoI	GCNNNNNNNGC	5 cut(s)	18, 289, 500, 509, 776
NdeII	GATC	2 cut(s)	22, 593
NlaIII	CATG	4 cut(s)	263, 586, 736, 752
NsiI	ATGCAT	1 cut(s)	265
NspI	RCATGY	1 cut(s)	263
PceI	AGGCCT	1 cut(s)	368
PfeI	GAWTC	1 cut(s)	824
PkrI	GCNGC	2 cut(s)	325, 414
PleI	GAGTC	1 cut(s)	193
PpsI	GAGTC	1 cut(s)	193
PspFI	CCCAGC	1 cut(s)	292
PspPI	GGNCC	1 cut(s)	424
RsaI	GTAC	2 cut(s)	135, 626
RsaNI	GTAC	2 cut(s)	134, 625
SaqAI	TTAA	5 cut(s)	68, 93, 437, 489, 552
SatI	GCNGC	2 cut(s)	324, 413
Sau3AI	GATC	2 cut(s)	22, 593
Sau96I	GGNCC	1 cut(s)	424
SchI	GAGTC	1 cut(s)	194
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	105
Sse9I	AATT	4 cut(s)	405, 442, 549, 752
SseBI	AGGCCT	1 cut(s)	368
SspMI	CTAG	2 cut(s)	305, 335
StuI	AGGCCT	1 cut(s)	368
StyI	CCWWGG	2 cut(s)	334, 759
TaaI	ACNGT	4 cut(s)	269, 300, 435, 531
TaqI	TCGA	1 cut(s)	822
TasI	AATT	4 cut(s)	405, 442, 549, 752
TatI	WGTACW	2 cut(s)	133, 624
TfiI	GAWTC	1 cut(s)	824
Tru1I	TTAA	5 cut(s)	68, 93, 437, 489, 552
Tru9I	TTAA	5 cut(s)	68, 93, 437, 489, 552
TscAI	CASTG	1 cut(s)	536
TseI	GCWGC	2 cut(s)	323, 412
TspDTI	ATGAA	6 cut(s)	17, 63, 455, 704, 708, 765
TspGWI	ACGGA	2 cut(s)	461, 700
TspRI	CASTG	1 cut(s)	536
XapI	RAATTY	2 cut(s)	442, 752
XceI	RCATGY	1 cut(s)	263
XmaJI	CCTAGG	1 cut(s)	334
XspI	CTAG	2 cut(s)	305, 335
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.