Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006190

Physical Location & Seq

Genomic Coordinates Forward (+)

6734245 .. 6742128

Gene Structure 7884 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGTTTCTTCACTCCGACCGGCTCGTTCACCAGCAATCTCCTGTTCACAGTTTCACCAGAAGCTCACATTTTCCGAGGTCGGGAAGCTCTCGAAGCTTGGTGTATCCGGACATGGCTCCGCCGGTCCTGTCCTTGGTTCTGCCCTCTGAGACCGGTCGCGTTCTTAGTATTCAATCTCATACTGTCCAGGGATATGTTGGGAATAAGTCAGCTGTCTTTCCCCTGCAACTACTAGGCTACGATGTGGATCCAATTAATTCAGTCCAGTTCTCTAACCACACAGGATACCCAACTTTTAAGGGTCAAGTTTTGAATGGACAGCAACTATGGGAATTGGTAGAAGGCCTTGAAGCAAATGAGTTATTATACTACACTCATCTATTAACAGGTTATATTGGTTCAGTTTCGTTTTTGAACACTGTGTTGGAGGTTGTCAATAAGCTTCGCTCTGTAAACCCAAAACTTAAATATGTCTGTGATCCAGTGATGGGTGATGAAGGAAAGCTCTATGTCCCTCAAGAGCTGGTAGCAGTATATCGGGAGAAGGTTGTCCCAGTGGCTTCAATGTTGACTCCCAACCAGTTTGAAGCAGAACTCTTGACTAACTCGAGGATTGAATCTGAAAAAGATGGTCGTGAAGCTTGTAACCTTCTTCATGCTGCGGGACCGTCAATGGTTGTGATAACAAGCATAAATATAAATGGTAATCTTCTTCTGATTGGTAGTCATCAAAAGGAAAAGGGTCTGCCTGCCAAGCAATTCAAGATAGTGATTCCTAAAATTCCTGCATACTTTACGGGAACAGGAGATCTCACGACTGCACTTCTCCTTGGGTGGAGCAATAAATATCCTGACAACCTAGGGAAGGCAGCTGAGCTTGCTGTATCATCCTTGCAGGCTCTTCTGCAAAGGACGATTAGTGACTATAAAAGTGCCGGCCATGATCCCAAGTCAACCAGTCTGGAGATTCGATTAATTCAAAGCCAGGACGACATTCGTAACCCGGAAATCAAATTTAGAGCTGAAAGATACACCTTAATGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006081 GO:0006725 GO:0006732 GO:0006766 GO:0006767 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0006972 GO:0007275 GO:0008150 GO:0008152 GO:0008478 GO:0008614 GO:0008615 GO:0009058 GO:0009108 GO:0009110 GO:0009443 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0034641 GO:0042364 GO:0042538 GO:0042816 GO:0042819 GO:0042822 GO:0042823 GO:0043094 GO:0044237 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0046184 GO:0046483 GO:0048364 GO:0048731 GO:0048856 GO:0048869 GO:0050896 GO:0051186 GO:0051188 GO:0071704 GO:0072524 GO:0072525 GO:0090407 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00750 ko01100 map00750 map01100

Pfam Domains

Protein Families

Phos_pyr_kin

Protein Analysis

349

Amino Acids

38.52

Weight (kDa)

7.16

Isoelectric Point (pI)

39.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Phos_pyr_kin	PF08543	129 - 235	2e-14	Phosphomethylpyrimidine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G37850 AT5G37850 AT5G37850 AT5G37850
fragaria_vesca	FvH4_1g24900 FvH4_1g24900 FvH4_1g24900 FvH4_1g24900
malus_domestica	MD12G1075700.v1.1
prunus_persica	Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1 Prupe.3G158100_v2.0.a1
pyrus_communis	pycom12g06500
rosa_chinensis	RchiOBHm_Chr2g0122561
rosa_laevigata	RLG00000018690
rosa_multiflora	Rmu_sc0003832.1_g000001 Rmu_sc0028505.1_g000001
rosa_roxburghii	Rroxscaffold_2G00121470
rosa_rugosa	Rorug02G0239500 Rorug02G0239600
rosa_samantha	Rh2AG298200 Rh2BG307000 Rh2CG285100 Rh2DG321800
rosa_wichuraiana	Rw2G023710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	159
AccIII	TCCGGA	1 cut(s)	106
AciI	CCGC	2 cut(s)	119, 662
AclWI	GGATC	4 cut(s)	242, 255, 473, 938
AcoI	YGGCCR	1 cut(s)	937
AcsI	RAATTY	2 cut(s)	780, 1013
AfiI	CCNNNNNNNGG	4 cut(s)	80, 133, 488, 865
AgeI	ACCGGT	1 cut(s)	152
AgsI	TTSAA	9 cut(s)	173, 313, 350, 415, 564, 587, 617, 763, 980
AjnI	CCWGG	2 cut(s)	186, 984
AjuI	GAANNNNNNNTTGG	2 cut(s)	407, 439
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	4 cut(s)	242, 255, 473, 938
Ama87I	CYCGRG	1 cut(s)	607
Aor13HI	TCCGGA	1 cut(s)	106
AoxI	GGCC	2 cut(s)	343, 937
ApeKI	GCWGC	2 cut(s)	659, 869
ApoI	RAATTY	2 cut(s)	780, 1013
AseI	ATTAAT	2 cut(s)	255, 974
AsiGI	ACCGGT	1 cut(s)	152
AspA2I	CCTAGG	1 cut(s)	859
AspS9I	GGNCC	2 cut(s)	124, 665
AsuC2I	CCSGG	1 cut(s)	1004
AsuHPI	GGTGA	3 cut(s)	20, 46, 503
AvaI	CYCGRG	1 cut(s)	607
AvaII	GGWCC	2 cut(s)	124, 665
AvrII	CCTAGG	1 cut(s)	859
BamHI	GGATCC	1 cut(s)	247
BbvI	GCAGC	2 cut(s)	646, 881
BccI	CCATC	2 cut(s)	481, 623
BciT130I	CCWGG	2 cut(s)	188, 986
BciVI	GTATCC	2 cut(s)	114, 278
BcnI	CCSGG	1 cut(s)	1004
BcoDI	GTCTC	1 cut(s)	143
BfaI	CTAG	2 cut(s)	233, 860
BfuI	GTATCC	2 cut(s)	114, 278
BglII	AGATCT	1 cut(s)	808
BisI	GCNGC	2 cut(s)	660, 870
BlnI	CCTAGG	1 cut(s)	859
BlpI	GCTNAGC	1 cut(s)	873
BlsI	GCNGC	2 cut(s)	661, 871
Bme1390I	CCNGG	3 cut(s)	188, 986, 1004
Bme18I	GGWCC	2 cut(s)	124, 665
BmeT110I	CYCGRG	1 cut(s)	607
BmgT120I	GGNCC	2 cut(s)	124, 665
BmiI	GGNNCC	3 cut(s)	117, 249, 666
BmrFI	CCNGG	3 cut(s)	188, 986, 1004
BmrI	ACTGGG	1 cut(s)	548
BmuI	ACTGGG	1 cut(s)	548
BpmI	CTGGAG	1 cut(s)	983
Bpu1102I	GCTNAGC	1 cut(s)	873
BpuEI	CTTGAG	1 cut(s)	501
BpuMI	CCSGG	1 cut(s)	1004
BsaBI	GATNNNNATC	1 cut(s)	246
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	5 cut(s)	74, 132, 187, 829, 859
BsaWI	WCCGGW	2 cut(s)	106, 152
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 133, 488, 865
Bse118I	RCCGGY	4 cut(s)	18, 121, 152, 935
Bse1I	ACTGG	5 cut(s)	265, 482, 554, 580, 957
Bse8I	GATNNNNATC	1 cut(s)	246
BseAI	TCCGGA	1 cut(s)	106
BseBI	CCWGG	2 cut(s)	188, 986
BseDI	CCNNGG	5 cut(s)	74, 132, 187, 829, 859
BseGI	GGATG	1 cut(s)	887
BseJI	GATNNNNATC	1 cut(s)	246
BseLI	CCNNNNNNNGG	4 cut(s)	80, 133, 488, 865
BseMII	CTCAG	2 cut(s)	138, 864
BseNI	ACTGG	5 cut(s)	265, 482, 554, 580, 957
BseXI	GCAGC	2 cut(s)	646, 881
BsgI	GTGCAG	1 cut(s)	804
Bsh1236I	CGCG	1 cut(s)	159
Bsh1285I	CGRYCG	2 cut(s)	19, 157
BshFI	GGCC	2 cut(s)	345, 939
BshTI	ACCGGT	1 cut(s)	152
BsiEI	CGRYCG	2 cut(s)	19, 157
BsiHKCI	CYCGRG	1 cut(s)	607
BsiSI	CCGG	6 cut(s)	19, 107, 122, 153, 936, 1004
BslFI	GGGAC	3 cut(s)	497, 536, 678
BslI	CCNNNNNNNGG	4 cut(s)	80, 133, 488, 865
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	3 cut(s)	497, 536, 678
BsnI	GGCC	2 cut(s)	345, 939
Bso31I	GGTCTC	1 cut(s)	143
BsoBI	CYCGRG	1 cut(s)	607
Bsp13I	TCCGGA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	247, 478, 808, 943
Bsp1720I	GCTNAGC	1 cut(s)	873
BspACI	CCGC	2 cut(s)	119, 662
BspANI	GGCC	2 cut(s)	345, 939
BspCNI	CTCAG	2 cut(s)	139, 865
BspEI	TCCGGA	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	159
BspLI	GGNNCC	3 cut(s)	117, 249, 666
BspPI	GGATC	4 cut(s)	242, 255, 473, 938
BspQI	GCTCTTC	1 cut(s)	906
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	4 cut(s)	18, 121, 152, 935
BsrI	ACTGG	5 cut(s)	265, 482, 554, 580, 957
BssAI	RCCGGY	4 cut(s)	18, 121, 152, 935
BssECI	CCNNGG	5 cut(s)	74, 132, 187, 829, 859
BssMI	GATC	4 cut(s)	247, 478, 808, 943
BssT1I	CCWWGG	3 cut(s)	132, 829, 859
Bst2UI	CCWGG	2 cut(s)	188, 986
Bst4CI	ACNGT	4 cut(s)	50, 184, 421, 669
Bst6I	CTCTTC	1 cut(s)	906
BstC8I	GCNNGC	4 cut(s)	750, 879, 897, 937
BstDEI	CTNAG	3 cut(s)	147, 164, 873
BstENI	CCTNNNNNAGG	1 cut(s)	863
BstF5I	GGATG	1 cut(s)	887
BstFNI	CGCG	1 cut(s)	159
BstKTI	GATC	4 cut(s)	250, 481, 811, 946
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	4 cut(s)	247, 478, 808, 943
BstMCI	CGRYCG	2 cut(s)	19, 157
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 754, 878
BstNI	CCWGG	2 cut(s)	188, 986
BstSCI	CCNGG	3 cut(s)	186, 984, 1002
BstUI	CGCG	1 cut(s)	159
BstV1I	GCAGC	2 cut(s)	646, 881
BstX2I	RGATCY	2 cut(s)	247, 808
BstYI	RGATCY	2 cut(s)	247, 808
BsuI	GTATCC	2 cut(s)	114, 278
BsuRI	GGCC	2 cut(s)	345, 939
BtsCI	GGATG	1 cut(s)	887
BtsIMutI	CAGTG	3 cut(s)	417, 489, 561
Cac8I	GCNNGC	4 cut(s)	750, 879, 897, 937
Cfr10I	RCCGGY	4 cut(s)	18, 121, 152, 935
Cfr13I	GGNCC	2 cut(s)	124, 665
CspAI	ACCGGT	1 cut(s)	152
CviAII	CATG	3 cut(s)	112, 656, 941
DdeI	CTNAG	3 cut(s)	147, 164, 873
DpnI	GATC	4 cut(s)	249, 480, 810, 945
DpnII	GATC	4 cut(s)	247, 478, 808, 943
EaeI	YGGCCR	1 cut(s)	937
Eam1104I	CTCTTC	1 cut(s)	906
EarI	CTCTTC	1 cut(s)	906
EciI	GGCGGA	1 cut(s)	108
Eco130I	CCWWGG	3 cut(s)	132, 829, 859
Eco147I	AGGCCT	1 cut(s)	345
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	2 cut(s)	124, 665
Eco88I	CYCGRG	1 cut(s)	607
EcoNI	CCTNNNNNAGG	1 cut(s)	863
EcoRII	CCWGG	2 cut(s)	186, 984
EcoT14I	CCWWGG	3 cut(s)	132, 829, 859
ErhI	CCWWGG	3 cut(s)	132, 829, 859
FaeI	CATG	3 cut(s)	115, 659, 944
FaqI	GGGAC	3 cut(s)	497, 536, 678
FatI	CATG	3 cut(s)	111, 655, 940
FauI	CCCGC	1 cut(s)	655
Fnu4HI	GCNGC	2 cut(s)	660, 870
FokI	GGATG	1 cut(s)	874
Fsp4HI	GCNGC	2 cut(s)	660, 870
FspBI	CTAG	2 cut(s)	233, 860
GluI	GCNGC	2 cut(s)	660, 870
GsuI	CTGGAG	1 cut(s)	983
HaeIII	GGCC	2 cut(s)	345, 939
HapII	CCGG	6 cut(s)	19, 107, 122, 153, 936, 1004
Hin1II	CATG	3 cut(s)	115, 659, 944
HincII	GTYRAC	2 cut(s)	570, 954
HindII	GTYRAC	2 cut(s)	570, 954
HindIII	AAGCTT	3 cut(s)	94, 440, 639
HinfI	GANTC	4 cut(s)	571, 617, 772, 967
HpaII	CCGG	6 cut(s)	19, 107, 122, 153, 936, 1004
HphI	GGTGA	3 cut(s)	20, 46, 503
Hpy166II	GTNNAC	5 cut(s)	28, 46, 454, 570, 954
Hpy188I	TCNGA	5 cut(s)	16, 75, 148, 622, 717
Hpy8I	GTNNAC	5 cut(s)	28, 46, 454, 570, 954
HpyAV	CCTTC	5 cut(s)	335, 491, 538, 659, 859
HpyCH4III	ACNGT	4 cut(s)	50, 184, 421, 669
HpyCH4V	TGCA	5 cut(s)	226, 788, 821, 895, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 754, 878
HpyF3I	CTNAG	3 cut(s)	147, 164, 873
Hsp92II	CATG	3 cut(s)	115, 659, 944
Kpn2I	TCCGGA	1 cut(s)	106
KroI	GCCGGC	1 cut(s)	935
KroNI	GCCGGC	1 cut(s)	937
Kzo9I	GATC	4 cut(s)	247, 478, 808, 943
LguI	GCTCTTC	1 cut(s)	906
LmnI	GCTCC	2 cut(s)	121, 837
Lsp1109I	GCAGC	2 cut(s)	646, 881
MaeI	CTAG	2 cut(s)	233, 860
MaeIII	GTNAC	3 cut(s)	644, 920, 998
MalI	GATC	4 cut(s)	249, 480, 810, 945
MboI	GATC	4 cut(s)	247, 478, 808, 943
MboII	GAAGA	4 cut(s)	644, 701, 704, 893
MflI	RGATCY	2 cut(s)	247, 808
MluCI	AATT	7 cut(s)	252, 256, 332, 758, 780, 975, 1013
MlyI	GAGTC	1 cut(s)	565
MmeI	TCCRAC	2 cut(s)	39, 405
MnlI	CCTC	5 cut(s)	69, 154, 421, 525, 603
MroI	TCCGGA	1 cut(s)	106
MroNI	GCCGGC	1 cut(s)	935
MseI	TTAA	6 cut(s)	255, 297, 383, 465, 974, 1037
MslI	CAYNNNNRTG	1 cut(s)	1037
MspA1I	CMGCKG	2 cut(s)	212, 872
MspI	CCGG	6 cut(s)	19, 107, 122, 153, 936, 1004
MspR9I	CCNGG	3 cut(s)	188, 986, 1004
MvaI	CCWGG	2 cut(s)	188, 986
MvnI	CGCG	1 cut(s)	159
MwoI	GCNNNNNNNGC	3 cut(s)	93, 754, 878
NaeI	GCCGGC	1 cut(s)	937
NciI	CCSGG	1 cut(s)	1004
NdeII	GATC	4 cut(s)	247, 478, 808, 943
NgoMIV	GCCGGC	1 cut(s)	935
NlaIII	CATG	3 cut(s)	115, 659, 944
NlaIV	GGNNCC	3 cut(s)	117, 249, 666
NmuCI	GTSAC	1 cut(s)	920
PaeR7I	CTCGAG	1 cut(s)	607
PceI	AGGCCT	1 cut(s)	345
PciSI	GCTCTTC	1 cut(s)	906
PdiI	GCCGGC	1 cut(s)	937
PfeI	GAWTC	3 cut(s)	617, 772, 967
PinAI	ACCGGT	1 cut(s)	152
PkrI	GCNGC	2 cut(s)	661, 871
PleI	GAGTC	1 cut(s)	565
PpsI	GAGTC	1 cut(s)	565
PshBI	ATTAAT	2 cut(s)	255, 974
Psp6I	CCWGG	2 cut(s)	186, 984
PspGI	CCWGG	2 cut(s)	186, 984
PspN4I	GGNNCC	3 cut(s)	117, 249, 666
PspPI	GGNCC	2 cut(s)	124, 665
PspXI	VCTCGAGB	1 cut(s)	607
PsuI	RGATCY	2 cut(s)	247, 808
PvuII	CAGCTG	2 cut(s)	212, 872
RseI	CAYNNNNRTG	1 cut(s)	1037
SapI	GCTCTTC	1 cut(s)	906
SaqAI	TTAA	6 cut(s)	255, 297, 383, 465, 974, 1037
SatI	GCNGC	2 cut(s)	660, 870
Sau3AI	GATC	4 cut(s)	247, 478, 808, 943
Sau96I	GGNCC	2 cut(s)	124, 665
SchI	GAGTC	1 cut(s)	565
ScrFI	CCNGG	3 cut(s)	188, 986, 1004
Sfr274I	CTCGAG	1 cut(s)	607
SinI	GGWCC	2 cut(s)	124, 665
SlaI	CTCGAG	1 cut(s)	607
SmiMI	CAYNNNNRTG	1 cut(s)	1037
SmlI	CTYRAG	2 cut(s)	516, 607
SmoI	CTYRAG	2 cut(s)	516, 607
Sse9I	AATT	7 cut(s)	252, 256, 332, 758, 780, 975, 1013
SseBI	AGGCCT	1 cut(s)	345
SsiI	CCGC	2 cut(s)	119, 662
SspMI	CTAG	2 cut(s)	233, 860
StuI	AGGCCT	1 cut(s)	345
StyD4I	CCNGG	3 cut(s)	186, 984, 1002
StyI	CCWWGG	3 cut(s)	132, 829, 859
TaaI	ACNGT	4 cut(s)	50, 184, 421, 669
TaqI	TCGA	3 cut(s)	91, 608, 970
TasI	AATT	7 cut(s)	252, 256, 332, 758, 780, 975, 1013
TfiI	GAWTC	3 cut(s)	617, 772, 967
Tru1I	TTAA	6 cut(s)	255, 297, 383, 465, 974, 1037
Tru9I	TTAA	6 cut(s)	255, 297, 383, 465, 974, 1037
TscAI	CASTG	3 cut(s)	424, 489, 561
TseFI	GTSAC	1 cut(s)	920
TseI	GCWGC	2 cut(s)	659, 869
Tsp45I	GTSAC	1 cut(s)	920
TspDTI	ATGAA	2 cut(s)	510, 644
TspRI	CASTG	3 cut(s)	424, 489, 561
VpaK11BI	GGWCC	2 cut(s)	124, 665
VspI	ATTAAT	2 cut(s)	255, 974
XagI	CCTNNNNNAGG	1 cut(s)	863
XapI	RAATTY	2 cut(s)	780, 1013
XcmI	CCANNNNNNNNNTGG	1 cut(s)	194
XhoI	CTCGAG	1 cut(s)	607
XmaJI	CCTAGG	1 cut(s)	859
XspI	CTAG	2 cut(s)	233, 860

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.