Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005540

Physical Location & Seq

Genomic Coordinates Forward (+)

7733204 .. 7734151

Gene Structure 948 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGACGACTCTGTTATCTACAGCAGCTCTTCCTTCAATAACAAAGCTCAGCCTGAAGCTTCTCAATCTCAACAATGGCGGCAACCTCCATCCAAAACCTTCTCACCTCTCAGCAGGATTCAGTTTAGATAAAGGCAACAAATTTTCATTGATTAGTTGTGCTGTAAAGAAGCAAGAGAGCACTGAAACGACCCAGAAAGTAAATGGGAAGATTACACCAAGGATAGGTGGTGGAATTGGGAACCCATTTTTGAGTGAGGGAAGGGATGAGGATGAGAGGAATGGACCGTTTTGCCCTGGGTGTGGGGTGTTTATGCAAGATAAGGACCCAAATGTTCCTGGGTTTTATCAGAAAAGAAAGATTAATGTGTCAGAATTGTCAGATGGTGAGGAGGGTGTTGAGGGTGAATTTGAAGACTTCGATGTCGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGTTTGTGGATGAAATCGAGGGAAAGTTTGCAGAAAGTGGTGAAGAAGATAGTGAATTGGAAATGGGGGATGAGTTTGAGTGGGATTCCGATGAATTCGAAGCCAAGTTGTTGGGGGAGGAAGAAAATGATTTGGATTTGGATGGTTTTACTCCAGCGGGAGTTGGGTACGGTAACATCAAAGTGGAAACTATAGAGAAGATGAAGAAGAAGGTGCCAAAATCGGAAAAGAAGAGAATGGCTAGAGAGGCTCAGAAAGAGAAAGAAGAGGTTACGGTGTGTGCCCGATGTCATTCATTAAGAAATTATGGGCAGGTGAAGAACCAAGCAGCTGAAAACTTAATGCCTGATTTTGATTTTGATAGGTTGATCGATCAACCCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

281

Amino Acids

31.2

Weight (kDa)

4.47

Isoelectric Point (pI)

49.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800
malus_domestica	MD12G1089400.v1.1
prunus_persica	Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1
pyrus_communis	pycom12g07380 pycom12g07390
rosa_chinensis	RchiOBHm_Chr3g0484591
rosa_laevigata	RLG00000023217
rosa_multiflora	Rmu_co8327473.1_g000001 Rmu_sc0000295.1_g000043 Rmu_sc0016014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248500 Rroxscaffold_6G00397610 Rroxscaffold_7G00205420
rosa_rugosa	Rorug03G0212100 Rorug03G0212200 Rorug03G0212300 Rorug03G0212400 Rorug03G0212500
rosa_samantha	Rh3AG262700 Rh3BG298100 Rh3CG295100 Rh3DG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	760
AasI	GACNNNNNNGTC	1 cut(s)	422
Acc36I	ACCTGC	1 cut(s)	760
AccB1I	GGYRCC	1 cut(s)	670
AciI	CCGC	2 cut(s)	78, 614
AcsI	RAATTY	3 cut(s)	140, 407, 551
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	626
AfiI	CCNNNNNNNGG	2 cut(s)	224, 302
AgsI	TTSAA	2 cut(s)	36, 413
AjnI	CCWGG	2 cut(s)	295, 337
AluBI	AGCT	4 cut(s)	26, 46, 58, 788
AluI	AGCT	4 cut(s)	26, 46, 58, 788
Alw21I	GWGCWC	1 cut(s)	182
ApeKI	GCWGC	2 cut(s)	23, 785
ApoI	RAATTY	3 cut(s)	140, 407, 551
AseI	ATTAAT	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	284, 325
AsuC2I	CCSGG	1 cut(s)	837
AsuHPI	GGTGA	5 cut(s)	95, 398, 416, 509, 784
AsuII	TTCGAA	1 cut(s)	555
AvaII	GGWCC	2 cut(s)	284, 325
BaeGI	GKGCMC	1 cut(s)	742
BanI	GGYRCC	1 cut(s)	670
BbsI	GAAGAC	1 cut(s)	420
Bbv12I	GWGCWC	1 cut(s)	182
BbvI	GCAGC	2 cut(s)	35, 797
BccI	CCATC	3 cut(s)	96, 377, 593
BciT130I	CCWGG	2 cut(s)	297, 339
BcnI	CCSGG	1 cut(s)	837
BfaI	CTAG	1 cut(s)	699
BfmI	CTRYAG	2 cut(s)	18, 648
BfuAI	ACCTGC	1 cut(s)	760
BisI	GCNGC	3 cut(s)	24, 79, 786
BlpI	GCTNAGC	1 cut(s)	47
BlsI	GCNGC	3 cut(s)	25, 80, 787
Bme1390I	CCNGG	3 cut(s)	297, 339, 837
Bme18I	GGWCC	2 cut(s)	284, 325
BmgT120I	GGNCC	2 cut(s)	284, 325
BmiI	GGNNCC	3 cut(s)	242, 327, 672
BmrFI	CCNGG	3 cut(s)	297, 339, 837
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	594
Bpu1102I	GCTNAGC	1 cut(s)	47
Bpu14I	TTCGAA	1 cut(s)	555
BpuMI	CCSGG	1 cut(s)	837
Bsa29I	ATCGAT	1 cut(s)	828
BsaJI	CCNNGG	4 cut(s)	218, 295, 296, 338
BsaXI	ACNNNNNCTCC	2 cut(s)	443, 473
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 302
BseBI	CCWGG	2 cut(s)	297, 339
BseCI	ATCGAT	1 cut(s)	828
BseDI	CCNNGG	4 cut(s)	218, 295, 296, 338
BseGI	GGATG	6 cut(s)	88, 271, 277, 472, 532, 604
BseLI	CCNNNNNNNGG	2 cut(s)	224, 302
BseMII	CTCAG	3 cut(s)	61, 123, 722
BseRI	GAGGAG	8 cut(s)	404, 452, 455, 458, 461, 464, 467, 470
BseSI	GKGCMC	1 cut(s)	742
BseXI	GCAGC	2 cut(s)	35, 797
BshNI	GGYRCC	1 cut(s)	670
BshVI	ATCGAT	1 cut(s)	828
BsiHKAI	GWGCWC	1 cut(s)	182
BsiSI	CCGG	1 cut(s)	837
BslI	CCNNNNNNNGG	2 cut(s)	224, 302
Bsp119I	TTCGAA	1 cut(s)	555
Bsp1286I	GDGCHC	2 cut(s)	182, 742
Bsp143I	GATC	2 cut(s)	825, 829
Bsp1720I	GCTNAGC	1 cut(s)	47
BspACI	CCGC	2 cut(s)	78, 614
BspCNI	CTCAG	3 cut(s)	60, 122, 721
BspDI	ATCGAT	1 cut(s)	828
BspLI	GGNNCC	3 cut(s)	242, 327, 672
BspMI	ACCTGC	1 cut(s)	760
BspQI	GCTCTTC	1 cut(s)	33
BspT104I	TTCGAA	1 cut(s)	555
BspT107I	GGYRCC	1 cut(s)	670
BssECI	CCNNGG	4 cut(s)	218, 295, 296, 338
BssMI	GATC	2 cut(s)	825, 829
BssT1I	CCWWGG	1 cut(s)	218
Bst2UI	CCWGG	2 cut(s)	297, 339
Bst4CI	ACNGT	3 cut(s)	288, 629, 733
Bst6I	CTCTTC	4 cut(s)	33, 429, 683, 717
BstBI	TTCGAA	1 cut(s)	555
BstDEI	CTNAG	3 cut(s)	47, 109, 708
BstF5I	GGATG	6 cut(s)	88, 271, 277, 472, 532, 604
BstKTI	GATC	2 cut(s)	828, 832
BstMBI	GATC	2 cut(s)	825, 829
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	2 cut(s)	297, 339
BstSCI	CCNGG	3 cut(s)	295, 337, 835
BstSFI	CTRYAG	2 cut(s)	18, 648
BstSLI	GKGCMC	1 cut(s)	742
BstV1I	GCAGC	2 cut(s)	35, 797
BstV2I	GAAGAC	1 cut(s)	420
BstXI	CCANNNNNNTGG	1 cut(s)	568
Bsu15I	ATCGAT	1 cut(s)	828
BsuTUI	ATCGAT	1 cut(s)	828
BtsCI	GGATG	6 cut(s)	88, 271, 277, 472, 532, 604
BtsIMutI	CAGTG	1 cut(s)	180
BveI	ACCTGC	1 cut(s)	760
Cfr13I	GGNCC	2 cut(s)	284, 325
ClaI	ATCGAT	1 cut(s)	828
Csp6I	GTAC	1 cut(s)	625
CviJI	RGCY	9 cut(s)	26, 46, 51, 58, 560, 698, 707, 788, 840
CviKI_1	RGCY	9 cut(s)	26, 46, 51, 58, 560, 698, 707, 788, 840
CviQI	GTAC	1 cut(s)	625
DdeI	CTNAG	3 cut(s)	47, 109, 708
DpnI	GATC	2 cut(s)	827, 831
DpnII	GATC	2 cut(s)	825, 829
DrdI	GACNNNNNNGTC	1 cut(s)	422
DseDI	GACNNNNNNGTC	1 cut(s)	422
Eam1104I	CTCTTC	4 cut(s)	33, 429, 683, 717
EarI	CTCTTC	4 cut(s)	33, 429, 683, 717
Eco130I	CCWWGG	1 cut(s)	218
Eco47I	GGWCC	2 cut(s)	284, 325
Eco57I	CTGAAG	1 cut(s)	74
EcoO109I	RGGNCCY	1 cut(s)	325
EcoRI	GAATTC	1 cut(s)	551
EcoRII	CCWGG	2 cut(s)	295, 337
EcoT14I	CCWWGG	1 cut(s)	218
ErhI	CCWWGG	1 cut(s)	218
FaiI	YATR	3 cut(s)	314, 650, 765
FauI	CCCGC	1 cut(s)	607
Fnu4HI	GCNGC	3 cut(s)	24, 79, 786
FokI	GGATG	6 cut(s)	75, 278, 284, 479, 539, 611
Fsp4HI	GCNGC	3 cut(s)	24, 79, 786
FspBI	CTAG	1 cut(s)	699
GluI	GCNGC	3 cut(s)	24, 79, 786
GsuI	CTGGAG	1 cut(s)	594
HapII	CCGG	1 cut(s)	837
HindIII	AAGCTT	1 cut(s)	56
HinfI	GANTC	3 cut(s)	7, 117, 542
HpaII	CCGG	1 cut(s)	837
HphI	GGTGA	5 cut(s)	95, 398, 416, 509, 784
Hpy188I	TCNGA	6 cut(s)	351, 373, 382, 547, 682, 711
HpyAV	CCTTC	4 cut(s)	42, 108, 255, 661
HpyCH4III	ACNGT	3 cut(s)	288, 629, 733
HpyCH4V	TGCA	2 cut(s)	316, 488
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	3 cut(s)	47, 109, 708
Kzo9I	GATC	2 cut(s)	825, 829
LguI	GCTCTTC	1 cut(s)	33
Lsp1109I	GCAGC	2 cut(s)	35, 797
MaeI	CTAG	1 cut(s)	699
MaeIII	GTNAC	2 cut(s)	629, 727
MalI	GATC	2 cut(s)	827, 831
MboI	GATC	2 cut(s)	825, 829
MhlI	GDGCHC	2 cut(s)	182, 742
MluCI	AATT	7 cut(s)	140, 234, 374, 407, 512, 551, 760
MseI	TTAA	3 cut(s)	363, 755, 797
MslI	CAYNNNNRTG	1 cut(s)	638
MspA1I	CMGCKG	2 cut(s)	614, 788
MspI	CCGG	1 cut(s)	837
MspR9I	CCNGG	3 cut(s)	297, 339, 837
MvaI	CCWGG	2 cut(s)	297, 339
MwoI	GCNNNNNNNGC	1 cut(s)	704
NciI	CCSGG	1 cut(s)	837
NdeII	GATC	2 cut(s)	825, 829
NlaIV	GGNNCC	3 cut(s)	242, 327, 672
NspV	TTCGAA	1 cut(s)	555
PaqCI	CACCTGC	1 cut(s)	760
PasI	CCCWGGG	1 cut(s)	296
PciSI	GCTCTTC	1 cut(s)	33
PfeI	GAWTC	2 cut(s)	117, 542
PkrI	GCNGC	3 cut(s)	25, 80, 787
PpuMI	RGGWCCY	1 cut(s)	325
PshBI	ATTAAT	1 cut(s)	363
Psp5II	RGGWCCY	1 cut(s)	325
Psp6I	CCWGG	2 cut(s)	295, 337
PspGI	CCWGG	2 cut(s)	295, 337
PspN4I	GGNNCC	3 cut(s)	242, 327, 672
PspPI	GGNCC	2 cut(s)	284, 325
PspPPI	RGGWCCY	1 cut(s)	325
PvuII	CAGCTG	1 cut(s)	788
RsaI	GTAC	1 cut(s)	626
RsaNI	GTAC	1 cut(s)	625
RseI	CAYNNNNRTG	1 cut(s)	638
SapI	GCTCTTC	1 cut(s)	33
SaqAI	TTAA	3 cut(s)	363, 755, 797
SatI	GCNGC	3 cut(s)	24, 79, 786
Sau3AI	GATC	2 cut(s)	825, 829
Sau96I	GGNCC	2 cut(s)	284, 325
ScrFI	CCNGG	3 cut(s)	297, 339, 837
SduI	GDGCHC	2 cut(s)	182, 742
SfcI	CTRYAG	2 cut(s)	18, 648
SfuI	TTCGAA	1 cut(s)	555
SinI	GGWCC	2 cut(s)	284, 325
SmiMI	CAYNNNNRTG	1 cut(s)	638
Sse9I	AATT	7 cut(s)	140, 234, 374, 407, 512, 551, 760
SsiI	CCGC	2 cut(s)	78, 614
SspMI	CTAG	1 cut(s)	699
StyD4I	CCNGG	3 cut(s)	295, 337, 835
StyI	CCWWGG	1 cut(s)	218
TaaI	ACNGT	3 cut(s)	288, 629, 733
TaqI	TCGA	5 cut(s)	420, 426, 474, 555, 828
TasI	AATT	7 cut(s)	140, 234, 374, 407, 512, 551, 760
TauI	GCSGC	1 cut(s)	81
TfiI	GAWTC	2 cut(s)	117, 542
Tru1I	TTAA	3 cut(s)	363, 755, 797
Tru9I	TTAA	3 cut(s)	363, 755, 797
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	2 cut(s)	23, 785
TspDTI	ATGAA	5 cut(s)	135, 483, 564, 674, 741
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	284, 325
VspI	ATTAAT	1 cut(s)	363
XapI	RAATTY	3 cut(s)	140, 407, 551
XcmI	CCANNNNNNNNNTGG	1 cut(s)	200
XspI	CTAG	1 cut(s)	699

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.