Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005540

Physical Location & Seq

Genomic Coordinates Reverse (-)

19144125 .. 19145157

Gene Structure 1033 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGTCAGAGAAACAAGGCTTGAATGGAGCCTACTACGGCCCATCCATCCCACCCAAGAGGGAGTCCTACCAAAGCGTCGGCCGCGGCGGAGGTCCCCTCGGCTGCTGCTGCAGCTGTATCTTCGGCCTCGTCTTCAAGCTCATCTTCACCGCCATCGTCTTCATGGGCCTCGCCTTCTTCGTCTTCTGGCTCATAGTCAAACCGAACCGTGTCAAGTTCCACGTCACCGACGCCACCCTCACCCAGTTCAACTACTCCTCCGACAACAACCTCCACTACAACCTCGGCCTCAACCTCACCATCCGAAACCCTAACAAAAAGCTCGGCATCTACTACGACCGCATCGAAGCCAGAGCTAACTACGAGGGCCAGAGGTTCAGCACGATCACTCTCACCCCGTTTTACCAAGGACACAAAACTACAAACGTTTTGAACCCGGTGTTTCAGGGACAGCAATTGATTGTTGGATCCAACTTGCTTGAGGAGTTTAATCAACAGAAAAGTGCAGGGGTTTACGAGATTGAGATGAAGCTTTATTTGAGGATTCGGTTCAAGTTCGGTCGGATCAAGACCGGAAAGTTCAAGCCCAGAGTTGAATGTGACTTGAAGGTTCCTTTGAGTACGAATGGGAATTCCGCAACTACTTTTGAGACCAAGAGGTGCAAAATTGATTACTTCAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

227

Amino Acids

25.87

Weight (kDa)

9.59

Isoelectric Point (pI)

31.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LEA_2	PF03168	99 - 199	8.5e-10	Late embryogenesis abundant protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800
malus_domestica	MD12G1089400.v1.1
prunus_persica	Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1
pyrus_communis	pycom12g07380 pycom12g07390
rosa_chinensis	RchiOBHm_Chr3g0484591
rosa_laevigata	RLG00000023217
rosa_multiflora	Rmu_co8327473.1_g000001 Rmu_sc0000295.1_g000043 Rmu_sc0016014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248500 Rroxscaffold_6G00397610 Rroxscaffold_7G00205420
rosa_rugosa	Rorug03G0212100 Rorug03G0212200 Rorug03G0212300 Rorug03G0212400 Rorug03G0212500
rosa_samantha	Rh3AG262700 Rh3BG298100 Rh3CG295100 Rh3DG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	84
AciI	CCGC	6 cut(s)	82, 84, 87, 150, 340, 636
AclI	AACGTT	1 cut(s)	426
AclWI	GGATC	3 cut(s)	462, 475, 572
AcoI	YGGCCR	1 cut(s)	79
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	622
AgsI	TTSAA	9 cut(s)	22, 136, 250, 433, 553, 583, 596, 607, 679
AjiI	CACGTC	1 cut(s)	223
AluBI	AGCT	5 cut(s)	114, 139, 322, 356, 532
AluI	AGCT	5 cut(s)	114, 139, 322, 356, 532
Alw26I	GTCTC	1 cut(s)	644
AlwI	GGATC	3 cut(s)	462, 475, 572
AoxI	GGCC	6 cut(s)	37, 79, 124, 166, 286, 367
ApeKI	GCWGC	4 cut(s)	102, 105, 108, 111
ApoI	RAATTY	1 cut(s)	631
AspS9I	GGNCC	4 cut(s)	38, 92, 166, 367
AsuC2I	CCSGG	1 cut(s)	437
AsuHPI	GGTGA	5 cut(s)	139, 217, 232, 289, 385
AvaII	GGWCC	1 cut(s)	92
BamHI	GGATCC	1 cut(s)	467
BbsI	GAAGAC	3 cut(s)	124, 151, 175
BbvI	GCAGC	4 cut(s)	89, 92, 95, 123
BccI	CCATC	4 cut(s)	49, 53, 161, 308
BceAI	ACGGC	1 cut(s)	52
BcnI	CCSGG	1 cut(s)	437
BcoDI	GTCTC	1 cut(s)	644
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	6 cut(s)	82, 85, 103, 106, 109, 112
BlsI	GCNGC	6 cut(s)	83, 86, 104, 107, 110, 113
Bme1390I	CCNGG	1 cut(s)	437
Bme18I	GGWCC	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	4 cut(s)	38, 92, 166, 367
BmiI	GGNNCC	4 cut(s)	28, 94, 469, 612
BmrFI	CCNGG	1 cut(s)	437
BmrI	ACTGGG	1 cut(s)	238
BmsI	GCATC	2 cut(s)	336, 351
BmuI	ACTGGG	1 cut(s)	238
BpiI	GAAGAC	3 cut(s)	124, 151, 175
BplI	GAGNNNNNCTC	2 cut(s)	81, 113
BpuEI	CTTGAG	1 cut(s)	500
BpuMI	CCSGG	1 cut(s)	437
BsaHI	GRCGYC	1 cut(s)	231
BsaI	GGTCTC	1 cut(s)	644
BsaJI	CCNNGG	4 cut(s)	82, 97, 283, 406
BsaWI	WCCGGW	1 cut(s)	572
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bse1I	ACTGG	1 cut(s)	244
BseDI	CCNNGG	4 cut(s)	82, 97, 283, 406
BseGI	GGATG	3 cut(s)	41, 45, 300
BseNI	ACTGG	1 cut(s)	244
BseRI	GAGGAG	2 cut(s)	247, 497
BseX3I	CGGCCG	1 cut(s)	79
BseXI	GCAGC	4 cut(s)	89, 92, 95, 123
BsgI	GTGCAG	1 cut(s)	525
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	3 cut(s)	82, 340, 562
BshFI	GGCC	6 cut(s)	39, 81, 126, 168, 288, 369
BsiEI	CGRYCG	3 cut(s)	82, 340, 562
BsiSI	CCGG	2 cut(s)	437, 573
BslFI	GGGAC	2 cut(s)	78, 462
BsmAI	GTCTC	1 cut(s)	644
BsmFI	GGGAC	2 cut(s)	78, 462
BsnI	GGCC	6 cut(s)	39, 81, 126, 168, 288, 369
Bso31I	GGTCTC	1 cut(s)	644
Bsp143I	GATC	3 cut(s)	384, 467, 564
BspACI	CCGC	6 cut(s)	82, 84, 87, 150, 340, 636
BspANI	GGCC	6 cut(s)	39, 81, 126, 168, 288, 369
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	4 cut(s)	28, 94, 469, 612
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	3 cut(s)	462, 475, 572
BspTNI	GGTCTC	1 cut(s)	644
BsrI	ACTGG	1 cut(s)	244
BssECI	CCNNGG	4 cut(s)	82, 97, 283, 406
BssMI	GATC	3 cut(s)	384, 467, 564
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	1 cut(s)	406
Bst4CI	ACNGT	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	82
BstF5I	GGATG	3 cut(s)	41, 45, 300
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	3 cut(s)	387, 470, 567
BstMAI	GTCTC	1 cut(s)	644
BstMBI	GATC	3 cut(s)	384, 467, 564
BstMCI	CGRYCG	3 cut(s)	82, 340, 562
BstMWI	GCNNNNNNNGC	3 cut(s)	81, 108, 111
BstSCI	CCNGG	1 cut(s)	435
BstSFI	CTRYAG	1 cut(s)	109
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	4 cut(s)	89, 92, 95, 123
BstV2I	GAAGAC	3 cut(s)	124, 151, 175
BstX2I	RGATCY	1 cut(s)	467
BstYI	RGATCY	1 cut(s)	467
BstZI	CGGCCG	1 cut(s)	79
BsuRI	GGCC	6 cut(s)	39, 81, 126, 168, 288, 369
BtgI	CCRYGG	1 cut(s)	82
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	3 cut(s)	41, 45, 300
Cfr13I	GGNCC	4 cut(s)	38, 92, 166, 367
Cfr42I	CCGCGG	1 cut(s)	85
CseI	GACGC	2 cut(s)	64, 239
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	1 cut(s)	163
CviQI	GTAC	1 cut(s)	621
DpnI	GATC	3 cut(s)	386, 469, 566
DpnII	GATC	3 cut(s)	384, 467, 564
EaeI	YGGCCR	1 cut(s)	79
EagI	CGGCCG	1 cut(s)	79
EciI	GGCGGA	1 cut(s)	102
EclXI	CGGCCG	1 cut(s)	79
Eco130I	CCWWGG	1 cut(s)	406
Eco31I	GGTCTC	1 cut(s)	644
Eco47I	GGWCC	1 cut(s)	92
Eco52I	CGGCCG	1 cut(s)	79
EcoO109I	RGGNCCY	1 cut(s)	92
EcoRI	GAATTC	1 cut(s)	631
EcoT14I	CCWWGG	1 cut(s)	406
ErhI	CCWWGG	1 cut(s)	406
FaeI	CATG	1 cut(s)	166
FaiI	YATR	2 cut(s)	164, 194
FalI	AAGNNNNNCTT	2 cut(s)	128, 160
FaqI	GGGAC	2 cut(s)	78, 462
FatI	CATG	1 cut(s)	162
Fnu4HI	GCNGC	6 cut(s)	82, 85, 103, 106, 109, 112
FokI	GGATG	3 cut(s)	28, 32, 287
Fsp4HI	GCNGC	6 cut(s)	82, 85, 103, 106, 109, 112
GluI	GCNGC	6 cut(s)	82, 85, 103, 106, 109, 112
HaeIII	GGCC	6 cut(s)	39, 81, 126, 168, 288, 369
HapII	CCGG	2 cut(s)	437, 573
HgaI	GACGC	2 cut(s)	64, 239
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	1 cut(s)	166
HindIII	AAGCTT	1 cut(s)	530
HinfI	GANTC	2 cut(s)	62, 544
HpaII	CCGG	2 cut(s)	437, 573
HphI	GGTGA	5 cut(s)	139, 217, 232, 289, 385
Hpy166II	GTNNAC	1 cut(s)	514
Hpy188I	TCNGA	4 cut(s)	7, 262, 305, 564
Hpy188III	TCNNGA	1 cut(s)	568
Hpy8I	GTNNAC	1 cut(s)	514
Hpy99I	CGWCG	2 cut(s)	80, 233
HpyAV	CCTTC	2 cut(s)	184, 601
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	222, 426
HpyCH4V	TGCA	3 cut(s)	111, 506, 663
HpyF10VI	GCNNNNNNNGC	3 cut(s)	81, 108, 111
HpySE526I	ACGT	2 cut(s)	222, 426
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	1 cut(s)	166
KspI	CCGCGG	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	384, 467, 564
LmnI	GCTCC	1 cut(s)	26
LpnPI	CCDG	9 cut(s)	172, 257, 364, 383, 431, 450, 492, 586, 601
Lsp1109I	GCAGC	4 cut(s)	89, 92, 95, 123
LweI	GCATC	2 cut(s)	336, 351
MaeII	ACGT	2 cut(s)	222, 426
MaeIII	GTNAC	2 cut(s)	223, 599
MalI	GATC	3 cut(s)	386, 469, 566
MboI	GATC	3 cut(s)	384, 467, 564
MboII	GAAGA	6 cut(s)	112, 124, 136, 151, 169, 175
MfeI	CAATTG	1 cut(s)	455
MflI	RGATCY	1 cut(s)	467
MluCI	AATT	4 cut(s)	455, 631, 666, 679
MlyI	GAGTC	1 cut(s)	71
MmeI	TCCRAC	4 cut(s)	285, 445, 495, 542
MseI	TTAA	1 cut(s)	489
MspA1I	CMGCKG	2 cut(s)	84, 114
MspI	CCGG	2 cut(s)	437, 573
MspR9I	CCNGG	1 cut(s)	437
MunI	CAATTG	1 cut(s)	455
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	3 cut(s)	81, 108, 111
NciI	CCSGG	1 cut(s)	437
NdeII	GATC	3 cut(s)	384, 467, 564
NlaIII	CATG	1 cut(s)	166
NlaIV	GGNNCC	4 cut(s)	28, 94, 469, 612
NmeAIII	GCCGAG	3 cut(s)	78, 264, 303
NmuCI	GTSAC	2 cut(s)	223, 599
PcsI	WCGNNNNNNNCGW	2 cut(s)	177, 342
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	6 cut(s)	83, 86, 104, 107, 110, 113
PleI	GAGTC	1 cut(s)	70
PpsI	GAGTC	1 cut(s)	70
PpuMI	RGGWCCY	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	426
Psp5II	RGGWCCY	1 cut(s)	92
PspN4I	GGNNCC	4 cut(s)	28, 94, 469, 612
PspPI	GGNCC	4 cut(s)	38, 92, 166, 367
PspPPI	RGGWCCY	1 cut(s)	92
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	1 cut(s)	467
PvuII	CAGCTG	1 cut(s)	114
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
SacII	CCGCGG	1 cut(s)	85
SaqAI	TTAA	1 cut(s)	489
SatI	GCNGC	6 cut(s)	82, 85, 103, 106, 109, 112
Sau3AI	GATC	3 cut(s)	384, 467, 564
Sau96I	GGNCC	4 cut(s)	38, 92, 166, 367
SchI	GAGTC	1 cut(s)	71
ScrFI	CCNGG	1 cut(s)	437
SfaNI	GCATC	2 cut(s)	336, 351
SfcI	CTRYAG	1 cut(s)	109
Sfr303I	CCGCGG	1 cut(s)	85
SgrBI	CCGCGG	1 cut(s)	85
SinI	GGWCC	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
Sse9I	AATT	4 cut(s)	455, 631, 666, 679
SsiI	CCGC	6 cut(s)	82, 84, 87, 150, 340, 636
StyD4I	CCNGG	1 cut(s)	435
StyI	CCWWGG	1 cut(s)	406
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	2 cut(s)	225, 429
TaqI	TCGA	1 cut(s)	345
TaqII	GACCGA	1 cut(s)	548
TasI	AATT	4 cut(s)	455, 631, 666, 679
TauI	GCSGC	2 cut(s)	84, 87
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	1 cut(s)	489
Tru9I	TTAA	1 cut(s)	489
TseFI	GTSAC	2 cut(s)	223, 599
TseI	GCWGC	4 cut(s)	102, 105, 108, 111
Tsp45I	GTSAC	2 cut(s)	223, 599
TspDTI	ATGAA	2 cut(s)	151, 542
VpaK11BI	GGWCC	1 cut(s)	92
XapI	RAATTY	1 cut(s)	631
XcmI	CCANNNNNNNNNTGG	1 cut(s)	160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.