Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005540

Physical Location & Seq

Genomic Coordinates Forward (+)

7734424 .. 7737913

Gene Structure 3490 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g07390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGGTTAGTTCTCATAAGGATTTGAATGTCAGGAATCTGTTATCCTTCCTCAAAGAATTGGCTGGCCCTCGAGGGAATGTATGGGTTATCGGGGCTCAAAATGCTGGCAAGTCCACTCTCATAAATGCACTAGCAAGGAAAGAAGGGGCAAAAGTCACAAAGCTCACGGAAGCTCCAGTTCCTGGGACAACATTAGGGATCCTGAGAGTTGGATCGATCTTGTCAGCTATGGCAAAGTTGTTTGACACTCCAGGACTTCTGCATCCATATTTGGTGTCCATGAGATTGAATAGGGATGAACAGAAAATGGTTGAAATACGGAAGGAGCTTCGTCCTCGGACTTATAGGATAAAGGCAGGACAAACCATACATATTGGTGGTTTACTGAGACTAGATCTTGTTCAAGCTTCTGTTGAAACAATTTATTTAACAGTTTGGGCTTCACCAAATATTTCTTTACATATGGGGAAGACAGAAAATGCTGATGAGACATGGAGGAGACATGTTGGTATTAGGTTGCAGCCTCCAATTGGCGCAGACCGTGCTGCTGAGATGGGAAAATGGGAAGAGAAGGAAATCAAAGTGTCTGGAGCAAGTTGGGATGTGAATAGCATCGATATTGCAGTAGCTGGTTTAGGTTGGTTTTCGTTAGGTCTTAAAGGGGAAGCAACCTTGACGCTGTGGACATATGATGGCATTGAAATTACTTTGAGAGAGCCGTTAGTTCTTGATCGGGCACCATCTCTTGAGAGACCCGGGTTTTGGCTACCGAAAGCAATATCTGAGGCAATTGGTAACCAGAGTAAACTTGAAGCTCAGAGGAAAAAGCTTCAAATGGAGAGTGCAGATTCCCTTTCCGAGGTATCCATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

291

Amino Acids

31.99

Weight (kDa)

9.44

Isoelectric Point (pI)

34.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MMR_HSR1	PF01926	27 - 92	5.6e-10	50S ribosome-binding GTPase
YqeH-like_C	PF21516	143 - 240	1.5e-10	YqeH-like, C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800
malus_domestica	MD12G1089400.v1.1
prunus_persica	Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1
pyrus_communis	pycom12g07380 pycom12g07390
rosa_chinensis	RchiOBHm_Chr3g0484591
rosa_laevigata	RLG00000023217
rosa_multiflora	Rmu_co8327473.1_g000001 Rmu_sc0000295.1_g000043 Rmu_sc0016014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248500 Rroxscaffold_6G00397610 Rroxscaffold_7G00205420
rosa_rugosa	Rorug03G0212100 Rorug03G0212200 Rorug03G0212300 Rorug03G0212400 Rorug03G0212500
rosa_samantha	Rh3AG262700 Rh3BG298100 Rh3CG295100 Rh3DG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	69
AccB1I	GGYRCC	1 cut(s)	736
AccB7I	CCANNNNNTGG	1 cut(s)	182
AclWI	GGATC	3 cut(s)	193, 206, 220
AfiI	CCNNNNNNNGG	4 cut(s)	182, 530, 762, 859
AflIII	ACRYGT	1 cut(s)	502
AgsI	TTSAA	8 cut(s)	25, 289, 314, 404, 416, 701, 812, 833
AjnI	CCWGG	2 cut(s)	181, 250
AluBI	AGCT	8 cut(s)	163, 173, 227, 328, 407, 629, 815, 829
AluI	AGCT	8 cut(s)	163, 173, 227, 328, 407, 629, 815, 829
Alw26I	GTCTC	4 cut(s)	382, 482, 493, 745
AlwI	GGATC	3 cut(s)	193, 206, 220
AlwNI	CAGNNNCTG	2 cut(s)	182, 629
Ama87I	CYCGRG	2 cut(s)	69, 755
AoxI	GGCC	1 cut(s)	64
ApeKI	GCWGC	2 cut(s)	520, 545
ArsI	GACNNNNNNTTYG	2 cut(s)	744, 776
AspLEI	GCGC	1 cut(s)	536
AspS9I	GGNCC	1 cut(s)	65
AsuC2I	CCSGG	2 cut(s)	756, 757
AsuHPI	GGTGA	1 cut(s)	435
AvaI	CYCGRG	2 cut(s)	69, 755
BaeGI	GKGCMC	1 cut(s)	739
BamHI	GGATCC	1 cut(s)	198
BanI	GGYRCC	1 cut(s)	736
BanII	GRGCYC	1 cut(s)	97
BbsI	GAAGAC	1 cut(s)	476
BbvI	GCAGC	2 cut(s)	532, 532
BccI	CCATC	3 cut(s)	547, 686, 748
BceAI	ACGGC	1 cut(s)	703
BciT130I	CCWGG	2 cut(s)	183, 252
BcnI	CCSGG	2 cut(s)	756, 757
BcoDI	GTCTC	4 cut(s)	382, 482, 493, 745
BfaI	CTAG	2 cut(s)	131, 392
BglII	AGATCT	1 cut(s)	394
BisI	GCNGC	2 cut(s)	521, 546
BlsI	GCNGC	2 cut(s)	522, 547
Bme1390I	CCNGG	4 cut(s)	183, 252, 756, 757
BmeT110I	CYCGRG	2 cut(s)	69, 755
BmgT120I	GGNCC	1 cut(s)	65
BmiI	GGNNCC	2 cut(s)	200, 738
BmrFI	CCNGG	4 cut(s)	183, 252, 756, 757
BmsI	GCATC	2 cut(s)	271, 621
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	3 cut(s)	159, 234, 609
BpuEI	CTTGAG	1 cut(s)	767
BpuMI	CCSGG	2 cut(s)	756, 757
Bsa29I	ATCGAT	2 cut(s)	215, 615
BsaI	GGTCTC	1 cut(s)	745
BsaJI	CCNNGG	4 cut(s)	182, 335, 755, 858
BsaXI	ACNNNNNCTCC	2 cut(s)	157, 187
Bsc4I	CCNNNNNNNGG	4 cut(s)	182, 530, 762, 859
Bse1I	ACTGG	1 cut(s)	176
BseBI	CCWGG	2 cut(s)	183, 252
BseCI	ATCGAT	2 cut(s)	215, 615
BseDI	CCNNGG	4 cut(s)	182, 335, 755, 858
BseGI	GGATG	3 cut(s)	262, 301, 607
BseLI	CCNNNNNNNGG	4 cut(s)	182, 530, 762, 859
BseMII	CTCAG	5 cut(s)	194, 377, 540, 774, 830
BseNI	ACTGG	1 cut(s)	176
BseRI	GAGGAG	1 cut(s)	511
BseSI	GKGCMC	1 cut(s)	739
BseXI	GCAGC	2 cut(s)	532, 532
BsgI	GTGCAG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	66
BshNI	GGYRCC	1 cut(s)	736
BshVI	ATCGAT	2 cut(s)	215, 615
BsiHKCI	CYCGRG	2 cut(s)	69, 755
BsiSI	CCGG	1 cut(s)	756
BslFI	GGGAC	1 cut(s)	199
BslI	CCNNNNNNNGG	4 cut(s)	182, 530, 762, 859
BsmAI	GTCTC	4 cut(s)	382, 482, 493, 745
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	66
Bso31I	GGTCTC	1 cut(s)	745
BsoBI	CYCGRG	2 cut(s)	69, 755
Bsp1286I	GDGCHC	2 cut(s)	97, 739
Bsp143I	GATC	5 cut(s)	198, 212, 216, 394, 730
BspANI	GGCC	1 cut(s)	66
BspCNI	CTCAG	5 cut(s)	195, 378, 541, 775, 829
BspDI	ATCGAT	2 cut(s)	215, 615
BspLI	GGNNCC	2 cut(s)	200, 738
BspPI	GGATC	3 cut(s)	193, 206, 220
BspT107I	GGYRCC	1 cut(s)	736
BspTNI	GGTCTC	1 cut(s)	745
BsrI	ACTGG	1 cut(s)	176
BssECI	CCNNGG	4 cut(s)	182, 335, 755, 858
BssMI	GATC	5 cut(s)	198, 212, 216, 394, 730
Bst2UI	CCWGG	2 cut(s)	183, 252
Bst4CI	ACNGT	2 cut(s)	433, 542
Bst6I	CTCTTC	1 cut(s)	561
BstAPI	GCANNNNNTGC	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	64, 106
BstDEI	CTNAG	5 cut(s)	203, 386, 549, 783, 816
BstEII	GGTNACC	1 cut(s)	794
BstENI	CCTNNNNNAGG	1 cut(s)	857
BstF5I	GGATG	3 cut(s)	262, 301, 607
BstHHI	GCGC	1 cut(s)	536
BstKTI	GATC	5 cut(s)	201, 215, 219, 397, 733
BstMAI	GTCTC	4 cut(s)	382, 482, 493, 745
BstMBI	GATC	5 cut(s)	198, 212, 216, 394, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	101, 542
BstNI	CCWGG	2 cut(s)	183, 252
BstNSI	RCATGY	1 cut(s)	506
BstPI	GGTNACC	1 cut(s)	794
BstSCI	CCNGG	4 cut(s)	181, 250, 754, 755
BstSLI	GKGCMC	1 cut(s)	739
BstV1I	GCAGC	2 cut(s)	532, 532
BstV2I	GAAGAC	1 cut(s)	476
BstX2I	RGATCY	2 cut(s)	198, 394
BstYI	RGATCY	2 cut(s)	198, 394
Bsu15I	ATCGAT	2 cut(s)	215, 615
BsuRI	GGCC	1 cut(s)	66
BsuTUI	ATCGAT	2 cut(s)	215, 615
BtsCI	GGATG	3 cut(s)	262, 301, 607
Cac8I	GCNNGC	2 cut(s)	64, 106
CaiI	CAGNNNCTG	2 cut(s)	182, 629
CfoI	GCGC	1 cut(s)	536
Cfr13I	GGNCC	1 cut(s)	65
Cfr9I	CCCGGG	1 cut(s)	755
ClaI	ATCGAT	2 cut(s)	215, 615
CseI	GACGC	1 cut(s)	685
CviAII	CATG	3 cut(s)	280, 492, 503
DdeI	CTNAG	5 cut(s)	203, 386, 549, 783, 816
DpnI	GATC	5 cut(s)	200, 214, 218, 396, 732
DpnII	GATC	5 cut(s)	198, 212, 216, 394, 730
Eam1104I	CTCTTC	1 cut(s)	561
EarI	CTCTTC	1 cut(s)	561
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	745
Eco88I	CYCGRG	2 cut(s)	69, 755
Eco91I	GGTNACC	1 cut(s)	794
EcoNI	CCTNNNNNAGG	1 cut(s)	857
EcoO65I	GGTNACC	1 cut(s)	794
EcoRII	CCWGG	2 cut(s)	181, 250
EcoT38I	GRGCYC	1 cut(s)	97
FaeI	CATG	3 cut(s)	283, 495, 506
FaqI	GGGAC	1 cut(s)	199
FatI	CATG	3 cut(s)	279, 491, 502
FauNDI	CATATG	2 cut(s)	462, 688
Fnu4HI	GCNGC	2 cut(s)	521, 546
FokI	GGATG	3 cut(s)	249, 308, 614
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	2 cut(s)	521, 546
FspBI	CTAG	2 cut(s)	131, 392
GlaI	GCGC	1 cut(s)	535
GluI	GCNGC	2 cut(s)	521, 546
GsuI	CTGGAG	3 cut(s)	159, 234, 609
HaeIII	GGCC	1 cut(s)	66
HapII	CCGG	1 cut(s)	756
HgaI	GACGC	1 cut(s)	685
HhaI	GCGC	1 cut(s)	536
Hin1II	CATG	3 cut(s)	283, 495, 506
Hin6I	GCGC	1 cut(s)	534
HinP1I	GCGC	1 cut(s)	534
HindIII	AAGCTT	2 cut(s)	405, 827
HinfI	GANTC	2 cut(s)	34, 848
HpaII	CCGG	1 cut(s)	756
HphI	GGTGA	1 cut(s)	435
Hpy166II	GTNNAC	4 cut(s)	114, 383, 684, 806
Hpy188I	TCNGA	4 cut(s)	339, 784, 819, 859
Hpy188III	TCNNGA	5 cut(s)	31, 202, 588, 728, 746
Hpy8I	GTNNAC	4 cut(s)	114, 383, 684, 806
HpyAV	CCTTC	4 cut(s)	55, 137, 316, 565
HpyCH4III	ACNGT	2 cut(s)	433, 542
HpyCH4V	TGCA	5 cut(s)	128, 262, 520, 623, 845
HpyF10VI	GCNNNNNNNGC	2 cut(s)	101, 542
HpyF3I	CTNAG	5 cut(s)	203, 386, 549, 783, 816
Hsp92II	CATG	3 cut(s)	283, 495, 506
HspAI	GCGC	1 cut(s)	534
Kzo9I	GATC	5 cut(s)	198, 212, 216, 394, 730
LmnI	GCTCC	3 cut(s)	178, 325, 590
Lsp1109I	GCAGC	2 cut(s)	532, 532
LweI	GCATC	2 cut(s)	271, 621
MaeI	CTAG	2 cut(s)	131, 392
MaeIII	GTNAC	2 cut(s)	154, 794
MalI	GATC	5 cut(s)	200, 214, 218, 396, 732
MboI	GATC	5 cut(s)	198, 212, 216, 394, 730
MboII	GAAGA	2 cut(s)	481, 578
MfeI	CAATTG	2 cut(s)	528, 789
MflI	RGATCY	2 cut(s)	198, 394
MhlI	GDGCHC	2 cut(s)	97, 739
MluCI	AATT	5 cut(s)	56, 420, 528, 702, 789
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	9 cut(s)	59, 65, 78, 345, 489, 534, 778, 813, 853
MseI	TTAA	2 cut(s)	428, 657
MslI	CAYNNNNRTG	1 cut(s)	375
MspI	CCGG	1 cut(s)	756
MspR9I	CCNGG	4 cut(s)	183, 252, 756, 757
MunI	CAATTG	2 cut(s)	528, 789
MvaI	CCWGG	2 cut(s)	183, 252
MwoI	GCNNNNNNNGC	2 cut(s)	101, 542
NciI	CCSGG	2 cut(s)	756, 757
NdeI	CATATG	2 cut(s)	462, 688
NdeII	GATC	5 cut(s)	198, 212, 216, 394, 730
NlaIII	CATG	3 cut(s)	283, 495, 506
NlaIV	GGNNCC	2 cut(s)	200, 738
NmuCI	GTSAC	1 cut(s)	154
NspI	RCATGY	1 cut(s)	506
PaeR7I	CTCGAG	1 cut(s)	69
PciI	ACATGT	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	34, 848
PflMI	CCANNNNNTGG	1 cut(s)	182
PfoI	TCCNGGA	1 cut(s)	250
PkrI	GCNGC	2 cut(s)	522, 547
PscI	ACATGT	1 cut(s)	502
Psp6I	CCWGG	2 cut(s)	181, 250
PspEI	GGTNACC	1 cut(s)	794
PspGI	CCWGG	2 cut(s)	181, 250
PspN4I	GGNNCC	2 cut(s)	200, 738
PspPI	GGNCC	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	69
PstNI	CAGNNNCTG	2 cut(s)	182, 629
PsuI	RGATCY	2 cut(s)	198, 394
RseI	CAYNNNNRTG	1 cut(s)	375
SaqAI	TTAA	2 cut(s)	428, 657
SatI	GCNGC	2 cut(s)	521, 546
Sau3AI	GATC	5 cut(s)	198, 212, 216, 394, 730
Sau96I	GGNCC	1 cut(s)	65
ScrFI	CCNGG	4 cut(s)	183, 252, 756, 757
SduI	GDGCHC	2 cut(s)	97, 739
SfaNI	GCATC	2 cut(s)	271, 621
Sfr274I	CTCGAG	1 cut(s)	69
SlaI	CTCGAG	1 cut(s)	69
SmaI	CCCGGG	1 cut(s)	757
SmiMI	CAYNNNNRTG	1 cut(s)	375
SmlI	CTYRAG	2 cut(s)	69, 746
SmoI	CTYRAG	2 cut(s)	69, 746
Sse9I	AATT	5 cut(s)	56, 420, 528, 702, 789
SspI	AATATT	1 cut(s)	451
SspMI	CTAG	2 cut(s)	131, 392
StyD4I	CCNGG	4 cut(s)	181, 250, 754, 755
TaaI	ACNGT	2 cut(s)	433, 542
TaqI	TCGA	3 cut(s)	70, 215, 615
TasI	AATT	5 cut(s)	56, 420, 528, 702, 789
TfiI	GAWTC	2 cut(s)	34, 848
Tru1I	TTAA	2 cut(s)	428, 657
Tru9I	TTAA	2 cut(s)	428, 657
TseFI	GTSAC	1 cut(s)	154
TseI	GCWGC	2 cut(s)	520, 545
Tsp45I	GTSAC	1 cut(s)	154
TspDTI	ATGAA	1 cut(s)	312
TspGWI	ACGGA	2 cut(s)	182, 334
TspMI	CCCGGG	1 cut(s)	755
Van91I	CCANNNNNTGG	1 cut(s)	182
XagI	CCTNNNNNAGG	1 cut(s)	857
XceI	RCATGY	1 cut(s)	506
XhoI	CTCGAG	1 cut(s)	69
XmaI	CCCGGG	1 cut(s)	755
XspI	CTAG	2 cut(s)	131, 392

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.