Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8327473.1

Orthogroup ID

OG0005540

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 965

Gene Structure 965 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8327473.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

gacaacccagctccgaaatcccacctcgccacagacaagtacaaacatacccaaaaggtttcattcgtaagtcttgctgtaaagaagcaacagagcgttgaaacaatccagaaagttgatgggaagatcactaggaggagaaaaggtggtggaagtggaaccccatttttgagtgagggaagagatgaggatgagggctatggtccagtttgccctggctgtggaatctttatgcaagataacaacccagaccttcctgggtattataagcaaaggaagttaactgtatcagcagagttgctagatgttgaagagtttgatgaggaagaggaggacattgagggtagctatgaggaaagtgatggggaagaaagtgaattggaaatgggggatgatgagtttgactgggattcagatgacttggaatctaagttgttgggggaggaagaagagaatgatttggatttggatggttttgcccctgcaggggttgggtatggtaacattaaggaggagactatagagaaaatgaagaggaagaagataccaaaagccgaaaagaagagaatggctagggaggctcagaaagagaaagatgaggttactgtgtgcgccagatgccattcattgagaaattatgggcaggtgaaaaaccaagcagccgaaaacttgatgcccgattttgatttcgataggttgattgcaacccggttgattaaacctgctactaatgccaatcctgttgtggttatggttgttgattgtgttgattttgatggctcattccccaaacgggcagcaaagtcattgtttcaggcattgagaggaaccgagaatgatcccaagtttcagaaaaaaatgccaaagcttgttctt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

292

Amino Acids

32.83

Weight (kDa)

4.81

Isoelectric Point (pI)

48.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800
malus_domestica	MD12G1089400.v1.1
prunus_persica	Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1
pyrus_communis	pycom12g07380 pycom12g07390
rosa_chinensis	RchiOBHm_Chr3g0484591
rosa_laevigata	RLG00000023217
rosa_multiflora	Rmu_co8327473.1_g000001 Rmu_sc0000295.1_g000043 Rmu_sc0016014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248500 Rroxscaffold_6G00397610 Rroxscaffold_7G00205420
rosa_rugosa	Rorug03G0212100 Rorug03G0212200 Rorug03G0212300 Rorug03G0212400 Rorug03G0212500
rosa_samantha	Rh3AG262700 Rh3BG298100 Rh3CG295100 Rh3DG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	267
AarI	CACCTGC	1 cut(s)	634
Acc36I	ACCTGC	2 cut(s)	634, 730
AclWI	GGATC	1 cut(s)	833
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	221, 486, 487, 793
AgsI	TTSAA	2 cut(s)	101, 311
AjnI	CCWGG	2 cut(s)	214, 256
AluBI	AGCT	3 cut(s)	11, 348, 868
AluI	AGCT	3 cut(s)	11, 348, 868
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	1 cut(s)	833
ApeKI	GCWGC	2 cut(s)	659, 797
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	1 cut(s)	203
AsuC2I	CCSGG	1 cut(s)	709
AsuHPI	GGTGA	1 cut(s)	658
AvaII	GGWCC	1 cut(s)	203
BbvI	GCAGC	2 cut(s)	671, 809
BccI	CCATC	4 cut(s)	113, 356, 464, 770
BciT130I	CCWGG	2 cut(s)	216, 258
BcnI	CCSGG	1 cut(s)	709
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	3 cut(s)	132, 302, 573
BfmI	CTRYAG	2 cut(s)	483, 519
BfuAI	ACCTGC	2 cut(s)	634, 730
BisI	GCNGC	2 cut(s)	660, 798
BlsI	GCNGC	2 cut(s)	661, 799
Bme1390I	CCNGG	3 cut(s)	216, 258, 709
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	2 cut(s)	160, 829
BmrFI	CCNGG	3 cut(s)	216, 258, 709
BmrI	ACTGGG	1 cut(s)	415
BmsI	GCATC	2 cut(s)	608, 663
BmuI	ACTGGG	1 cut(s)	415
BpuMI	CCSGG	1 cut(s)	709
BsaJI	CCNNGG	2 cut(s)	214, 257
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	4 cut(s)	221, 486, 487, 793
Bse1I	ACTGG	2 cut(s)	206, 410
BseBI	CCWGG	2 cut(s)	216, 258
BseDI	CCNNGG	2 cut(s)	214, 257
BseGI	GGATG	3 cut(s)	196, 397, 475
BseLI	CCNNNNNNNGG	4 cut(s)	221, 486, 487, 793
BseMII	CTCAG	1 cut(s)	596
BseNI	ACTGG	2 cut(s)	206, 410
BseRI	GAGGAG	3 cut(s)	151, 344, 527
BseXI	GCAGC	2 cut(s)	671, 809
BseYI	CCCAGC	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	709
BslI	CCNNNNNNNGG	4 cut(s)	221, 486, 487, 793
BsmAI	GTCTC	1 cut(s)	509
Bsp143I	GATC	2 cut(s)	126, 838
BspCNI	CTCAG	1 cut(s)	595
BspLI	GGNNCC	2 cut(s)	160, 829
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	2 cut(s)	634, 730
BspPI	GGATC	1 cut(s)	833
BsrI	ACTGG	2 cut(s)	206, 410
BssECI	CCNNGG	2 cut(s)	214, 257
BssMI	GATC	2 cut(s)	126, 838
Bst2UI	CCWGG	2 cut(s)	216, 258
Bst4CI	ACNGT	2 cut(s)	286, 607
Bst6I	CTCTTC	6 cut(s)	175, 306, 321, 444, 527, 557
BstDEI	CTNAG	2 cut(s)	429, 582
BstF5I	GGATG	3 cut(s)	196, 397, 475
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	2 cut(s)	129, 841
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	2 cut(s)	126, 838
BstMWI	GCNNNNNNNGC	3 cut(s)	578, 618, 731
BstNI	CCWGG	2 cut(s)	216, 258
BstSCI	CCNGG	3 cut(s)	214, 256, 707
BstSFI	CTRYAG	2 cut(s)	483, 519
BstV1I	GCAGC	2 cut(s)	671, 809
BtsCI	GGATG	3 cut(s)	196, 397, 475
BveI	ACCTGC	2 cut(s)	634, 730
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DdeI	CTNAG	2 cut(s)	429, 582
DpnI	GATC	2 cut(s)	128, 840
DpnII	GATC	2 cut(s)	126, 838
Eam1104I	CTCTTC	6 cut(s)	175, 306, 321, 444, 527, 557
EarI	CTCTTC	6 cut(s)	175, 306, 321, 444, 527, 557
Eco47I	GGWCC	1 cut(s)	203
EcoRII	CCWGG	2 cut(s)	214, 256
FaiI	YATR	9 cut(s)	48, 201, 233, 267, 351, 498, 521, 639, 752
Fnu4HI	GCNGC	2 cut(s)	660, 798
FokI	GGATG	3 cut(s)	203, 404, 482
Fsp4HI	GCNGC	2 cut(s)	660, 798
FspBI	CTAG	3 cut(s)	132, 302, 573
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	2 cut(s)	660, 798
GsaI	CCCAGC	1 cut(s)	11
HapII	CCGG	1 cut(s)	709
HhaI	GCGC	1 cut(s)	614
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HincII	GTYRAC	1 cut(s)	282
HindII	GTYRAC	1 cut(s)	282
HindIII	AAGCTT	1 cut(s)	866
HinfI	GANTC	3 cut(s)	225, 410, 425
HpaI	GTTAAC	1 cut(s)	282
HpaII	CCGG	1 cut(s)	709
HphI	GGTGA	1 cut(s)	658
Hpy166II	GTNNAC	1 cut(s)	282
Hpy188I	TCNGA	4 cut(s)	15, 415, 585, 852
Hpy188III	TCNNGA	1 cut(s)	109
Hpy8I	GTNNAC	1 cut(s)	282
HpyAV	CCTTC	1 cut(s)	263
HpyCH4III	ACNGT	2 cut(s)	286, 607
HpyCH4V	TGCA	3 cut(s)	235, 485, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	578, 618, 731
HpyF3I	CTNAG	2 cut(s)	429, 582
HspAI	GCGC	1 cut(s)	612
KspAI	GTTAAC	1 cut(s)	282
Kzo9I	GATC	2 cut(s)	126, 838
LmnI	GCTCC	1 cut(s)	16
Lsp1109I	GCAGC	2 cut(s)	671, 809
LweI	GCATC	2 cut(s)	608, 663
MaeI	CTAG	3 cut(s)	132, 302, 573
MaeIII	GTNAC	2 cut(s)	500, 601
MalI	GATC	2 cut(s)	128, 840
MboI	GATC	2 cut(s)	126, 838
MluCI	AATT	2 cut(s)	377, 634
MseI	TTAA	3 cut(s)	281, 507, 717
MspI	CCGG	1 cut(s)	709
MspR9I	CCNGG	3 cut(s)	216, 258, 709
MvaI	CCWGG	2 cut(s)	216, 258
MwoI	GCNNNNNNNGC	3 cut(s)	578, 618, 731
NciI	CCSGG	1 cut(s)	709
NdeII	GATC	2 cut(s)	126, 838
NlaIV	GGNNCC	2 cut(s)	160, 829
PaqCI	CACCTGC	1 cut(s)	634
PfeI	GAWTC	3 cut(s)	225, 410, 425
PkrI	GCNGC	2 cut(s)	661, 799
PsiI	TTATAA	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	214, 256
PspFI	CCCAGC	1 cut(s)	7
PspGI	CCWGG	2 cut(s)	214, 256
PspN4I	GGNNCC	2 cut(s)	160, 829
PspPI	GGNCC	1 cut(s)	203
PstI	CTGCAG	1 cut(s)	487
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	281, 507, 717
SatI	GCNGC	2 cut(s)	660, 798
Sau3AI	GATC	2 cut(s)	126, 838
Sau96I	GGNCC	1 cut(s)	203
SbfI	CCTGCAGG	1 cut(s)	487
ScrFI	CCNGG	3 cut(s)	216, 258, 709
SdaI	CCTGCAGG	1 cut(s)	487
SfaNI	GCATC	2 cut(s)	608, 663
SfcI	CTRYAG	2 cut(s)	483, 519
SinI	GGWCC	1 cut(s)	203
Sse8387I	CCTGCAGG	1 cut(s)	487
Sse9I	AATT	2 cut(s)	377, 634
SspMI	CTAG	3 cut(s)	132, 302, 573
StyD4I	CCNGG	3 cut(s)	214, 256, 707
TaaI	ACNGT	2 cut(s)	286, 607
TaqI	TCGA	1 cut(s)	690
TasI	AATT	2 cut(s)	377, 634
TatI	WGTACW	1 cut(s)	39
TfiI	GAWTC	3 cut(s)	225, 410, 425
Tru1I	TTAA	3 cut(s)	281, 507, 717
Tru9I	TTAA	3 cut(s)	281, 507, 717
TseI	GCWGC	2 cut(s)	659, 797
TspDTI	ATGAA	3 cut(s)	51, 545, 615
VpaK11BI	GGWCC	1 cut(s)	203
XcmI	CCANNNNNNNNNTGG	2 cut(s)	116, 742
XspI	CTAG	3 cut(s)	132, 302, 573

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.