Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0005540

Physical Location & Seq

Genomic Coordinates Reverse (-)

41833913 .. 41843752

Gene Structure 9840 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGCATTGTAATCCTCTATATAAAGAGGCCCATATTATCAATGAGAATACACAGCGAATTTCTCTCAATTTCGATTCCCTAAAACACCTGACCCATCTGCCAAAAAGAAAAGAAGAAAGAAACGAAACGAGAGAAAGAAGAAAGAAACGAGAAAGAAACGAAACCCAAGCAGCTTTCATTCTAAGCCCTACACGTACAATTCGAGAGGAGGACATTGAGGGTAGCTATGAGGAAAGTGATGGGGAAGAAAGTGAATTGGAAATGGGGGATGATGAGTTTGACTGGGATTCAGATGACTTGGAATCTAAGTTGTTGGGGGAGGAAGAAGAGAATGATTTGGATTTGGATGGTTTTGCCCCTGCAGGGGTTGGGTATGGTAACATTAAGGAGGAGACTATAGAGAAAATGAAGAGGAAGAAGATTCCAAAAGCCGAAAAGAAGAGAATGGCTAGAGAGGCTCGAAAGAGAAAGATGAGATGCCATTCGTTGAGAAATTATGGGCAGGTGAAAAACCAAGCAGCCGAAAACTTGATGCCCGATTTTGATTTCGATAGGTTGATTGCAACCCGGTTGATTAAACCTGCTACGAATGCCAATCTTGTTGTGGTTATGGTTGTTGATTGTGTTGATTTTGATGGCTCATTCCCCAAACGGGCAGCAAAGTCATTGTTTCGGGCATTGAGAGGAACCGAGAATGATCCCAAGTTTCGGAAAAAAAAAATAAAATGCCAAAGCTTGTTCTTGTGGCCACAAAGGTTGATCTCCTCCCATCACAAGTTTCACCTTCTAGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003924 GO:0006275 GO:0008150 GO:0008156 GO:0009889 GO:0009890 GO:0009892 GO:0010556 GO:0010558 GO:0010605 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017111 GO:0019219 GO:0019222 GO:0022613 GO:0030174 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0032297 GO:0042254 GO:0044085 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:0090329 GO:2000104 GO:2000112 GO:2000113

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MMR_HSR1

Protein Analysis

264

Amino Acids

30.93

Weight (kDa)

7.69

Isoelectric Point (pI)

53.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005540)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800 FvH4_6g24800
malus_domestica	MD12G1089400.v1.1
prunus_persica	Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1 Prupe.7G049400_v2.0.a1
pyrus_communis	pycom12g07380 pycom12g07390
rosa_chinensis	RchiOBHm_Chr3g0484591
rosa_laevigata	RLG00000023217
rosa_multiflora	Rmu_co8327473.1_g000001 Rmu_sc0000295.1_g000043 Rmu_sc0016014.1_g000001
rosa_roxburghii	Rroxscaffold_3G00248500 Rroxscaffold_6G00397610 Rroxscaffold_7G00205420
rosa_rugosa	Rorug03G0212100 Rorug03G0212200 Rorug03G0212300 Rorug03G0212400 Rorug03G0212500
rosa_samantha	Rh3AG262700 Rh3BG298100 Rh3CG295100 Rh3DG291400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	493
Acc36I	ACCTGC	2 cut(s)	493, 589
AclWI	GGATC	1 cut(s)	692
AcoI	YGGCCR	1 cut(s)	746
AcsI	RAATTY	1 cut(s)	57
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	4 cut(s)	363, 364, 652, 708
AflIII	ACRYGT	1 cut(s)	191
AluBI	AGCT	3 cut(s)	173, 225, 735
AluI	AGCT	3 cut(s)	173, 225, 735
Alw26I	GTCTC	1 cut(s)	386
AlwI	GGATC	1 cut(s)	692
AoxI	GGCC	2 cut(s)	27, 746
ApeKI	GCWGC	3 cut(s)	170, 518, 656
ApoI	RAATTY	1 cut(s)	57
AspS9I	GGNCC	1 cut(s)	28
AsuC2I	CCSGG	1 cut(s)	568
AsuHPI	GGTGA	2 cut(s)	517, 773
BalI	TGGCCA	1 cut(s)	748
BbvI	GCAGC	3 cut(s)	182, 530, 668
BccI	CCATC	5 cut(s)	102, 233, 341, 629, 777
BcnI	CCSGG	1 cut(s)	568
BcoDI	GTCTC	1 cut(s)	386
BfaI	CTAG	2 cut(s)	450, 788
BfmI	CTRYAG	2 cut(s)	360, 396
BfuAI	ACCTGC	2 cut(s)	493, 589
BisI	GCNGC	3 cut(s)	171, 519, 657
BlsI	GCNGC	3 cut(s)	172, 520, 658
Bme1390I	CCNGG	1 cut(s)	568
BmgT120I	GGNCC	1 cut(s)	28
BmiI	GGNNCC	1 cut(s)	688
BmrFI	CCNGG	1 cut(s)	568
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	2 cut(s)	467, 522
BmuI	ACTGGG	1 cut(s)	292
BpuMI	CCSGG	1 cut(s)	568
BsaAI	YACGTR	1 cut(s)	194
Bsc4I	CCNNNNNNNGG	4 cut(s)	363, 364, 652, 708
Bse1I	ACTGG	1 cut(s)	287
BseGI	GGATG	2 cut(s)	274, 352
BseLI	CCNNNNNNNGG	4 cut(s)	363, 364, 652, 708
BseNI	ACTGG	1 cut(s)	287
BseRI	GAGGAG	3 cut(s)	221, 404, 754
BseXI	GCAGC	3 cut(s)	182, 530, 668
BshFI	GGCC	2 cut(s)	29, 748
BsiSI	CCGG	1 cut(s)	568
BslI	CCNNNNNNNGG	4 cut(s)	363, 364, 652, 708
BsmAI	GTCTC	1 cut(s)	386
BsmI	GAATGC	1 cut(s)	595
BsnI	GGCC	2 cut(s)	29, 748
Bsp143I	GATC	2 cut(s)	697, 759
BspANI	GGCC	2 cut(s)	29, 748
BspLI	GGNNCC	1 cut(s)	688
BspMAI	CTGCAG	1 cut(s)	364
BspMI	ACCTGC	2 cut(s)	493, 589
BspPI	GGATC	1 cut(s)	692
BsrI	ACTGG	1 cut(s)	287
BssMI	GATC	2 cut(s)	697, 759
Bst6I	CTCTTC	3 cut(s)	321, 404, 434
BstBAI	YACGTR	1 cut(s)	194
BstDEI	CTNAG	2 cut(s)	182, 306
BstF5I	GGATG	2 cut(s)	274, 352
BstKTI	GATC	2 cut(s)	700, 762
BstMAI	GTCTC	1 cut(s)	386
BstMBI	GATC	2 cut(s)	697, 759
BstMWI	GCNNNNNNNGC	2 cut(s)	455, 590
BstSCI	CCNGG	1 cut(s)	566
BstSFI	CTRYAG	2 cut(s)	360, 396
BstV1I	GCAGC	3 cut(s)	182, 530, 668
BsuRI	GGCC	2 cut(s)	29, 748
BtsCI	GGATG	2 cut(s)	274, 352
BveI	ACCTGC	2 cut(s)	493, 589
Cfr13I	GGNCC	1 cut(s)	28
Csp6I	GTAC	1 cut(s)	195
CspCI	CAANNNNNGTGG	2 cut(s)	738, 773
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	2 cut(s)	182, 306
DpnI	GATC	2 cut(s)	699, 761
DpnII	GATC	2 cut(s)	697, 759
EaeI	YGGCCR	1 cut(s)	746
Eam1104I	CTCTTC	3 cut(s)	321, 404, 434
EarI	CTCTTC	3 cut(s)	321, 404, 434
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	8 cut(s)	19, 21, 33, 228, 375, 398, 498, 611
Fnu4HI	GCNGC	3 cut(s)	171, 519, 657
FokI	GGATG	2 cut(s)	281, 359
Fsp4HI	GCNGC	3 cut(s)	171, 519, 657
FspBI	CTAG	2 cut(s)	450, 788
GluI	GCNGC	3 cut(s)	171, 519, 657
HaeIII	GGCC	2 cut(s)	29, 748
HapII	CCGG	1 cut(s)	568
HindIII	AAGCTT	1 cut(s)	733
HinfI	GANTC	4 cut(s)	74, 287, 302, 421
HpaII	CCGG	1 cut(s)	568
HphI	GGTGA	2 cut(s)	517, 773
Hpy188I	TCNGA	2 cut(s)	292, 711
Hpy188III	TCNNGA	2 cut(s)	203, 788
HpyAV	CCTTC	1 cut(s)	794
HpyCH4IV	ACGT	1 cut(s)	193
HpyCH4V	TGCA	3 cut(s)	4, 362, 563
HpyF10VI	GCNNNNNNNGC	2 cut(s)	455, 590
HpyF3I	CTNAG	2 cut(s)	182, 306
HpySE526I	ACGT	1 cut(s)	193
Kzo9I	GATC	2 cut(s)	697, 759
LpnPI	CCDG	7 cut(s)	101, 268, 348, 372, 488, 581, 594
Lsp1109I	GCAGC	3 cut(s)	182, 530, 668
LweI	GCATC	2 cut(s)	467, 522
MaeI	CTAG	2 cut(s)	450, 788
MaeII	ACGT	1 cut(s)	193
MaeIII	GTNAC	1 cut(s)	377
MalI	GATC	2 cut(s)	699, 761
MboI	GATC	2 cut(s)	697, 759
MboII	GAAGA	9 cut(s)	125, 150, 257, 335, 338, 421, 427, 430, 451
MlsI	TGGCCA	1 cut(s)	748
MluCI	AATT	5 cut(s)	57, 67, 198, 254, 493
MluNI	TGGCCA	1 cut(s)	748
Mox20I	TGGCCA	1 cut(s)	748
Mph1103I	ATGCAT	1 cut(s)	6
MscI	TGGCCA	1 cut(s)	748
MseI	TTAA	2 cut(s)	384, 576
Msp20I	TGGCCA	1 cut(s)	748
MspI	CCGG	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	568
Mva1269I	GAATGC	1 cut(s)	595
MwoI	GCNNNNNNNGC	2 cut(s)	455, 590
NciI	CCSGG	1 cut(s)	568
NdeII	GATC	2 cut(s)	697, 759
NlaIV	GGNNCC	1 cut(s)	688
NsiI	ATGCAT	1 cut(s)	6
PaqCI	CACCTGC	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	199
PctI	GAATGC	1 cut(s)	595
PfeI	GAWTC	4 cut(s)	74, 287, 302, 421
PkrI	GCNGC	3 cut(s)	172, 520, 658
Ppu21I	YACGTR	1 cut(s)	194
PspN4I	GGNNCC	1 cut(s)	688
PspPI	GGNCC	1 cut(s)	28
PstI	CTGCAG	1 cut(s)	364
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	384, 576
SatI	GCNGC	3 cut(s)	171, 519, 657
Sau3AI	GATC	2 cut(s)	697, 759
Sau96I	GGNCC	1 cut(s)	28
SbfI	CCTGCAGG	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	568
SdaI	CCTGCAGG	1 cut(s)	364
SfaNI	GCATC	2 cut(s)	467, 522
SfcI	CTRYAG	2 cut(s)	360, 396
Sse8387I	CCTGCAGG	1 cut(s)	364
Sse9I	AATT	5 cut(s)	57, 67, 198, 254, 493
SspMI	CTAG	2 cut(s)	450, 788
StyD4I	CCNGG	1 cut(s)	566
TaiI	ACGT	1 cut(s)	196
TaqI	TCGA	4 cut(s)	72, 202, 460, 549
TasI	AATT	5 cut(s)	57, 67, 198, 254, 493
TfiI	GAWTC	4 cut(s)	74, 287, 302, 421
Tru1I	TTAA	2 cut(s)	384, 576
Tru9I	TTAA	2 cut(s)	384, 576
TseI	GCWGC	3 cut(s)	170, 518, 656
TspDTI	ATGAA	2 cut(s)	166, 422
XapI	RAATTY	1 cut(s)	57
XbaI	TCTAGA	1 cut(s)	787
XcmI	CCANNNNNNNNNTGG	1 cut(s)	601
XspI	CTAG	2 cut(s)	450, 788
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.