Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0009188

Physical Location & Seq

Genomic Coordinates Reverse (-)

10828258 .. 10832177

Gene Structure 3920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g09050.9

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGAACACATCCACTGGAGCTCCTCCAGATTATTTTGATAAAAATGGGCAGAATTGGGGTTTCCCTACCTACAATTGGGAGGAGATGTCGAAAGACAACTATGCATGGTGGCGTGCTCGTTTGACACAGATGGCAAAATACTTTACCGCTTACAGAATTGATCACATTTTGGGTTTCTTTCGTATCTGGGAGCTCCCAGAACATGCCATGACTGGGCTTGTTGGGAAATTTCGACCTTCCATTCCACTAAGTCAGGAGGAACTTGAAAGAGAGGGCATATGGGATTTTGATCGCTTGAGTCGCCCATATATTCTGCAGGAATATTTACAGGATAAATTCGGAGCTTCATGGACTTTTATTGCCTCTAATTTTCTAAATGAATATCAGAAGAACCACTATGAGTTTAAGGAGGACTGCAACACACAGAAAAAAATTGCTTCCAAGCTGAAGTCATTCGCAGAAAGGTCTCTGTTGCACGATGAAGACAAGATACGGCGTGAACTCTTTGATCTTATACAGAACATAGTTCTCATAAGAGATACAGAAAATCCAAGGAATTTCTATCCTCGTTTCAATCTTGAAGATACTCCAAGTTTTAATGATTTGGACGACCACAGCAAAAACGTATTGAAAAGATTATACTATGATTACTACTTCCACCGGCAAGAAAATCTTTGGCGGGAGAATGCTTTGAAAACGTTACCTGCTCTGCTTAACTCATCAGATATGCTCGCCTGTGGGGAAGATCTGGGGCTTATTCCTTCTTGTGTTCATCCTGTGATGCAAGAACTAGGATTAATAGGTTTACGCATTCAGCGCATGCCCAATGAACCTGATTTGGAGTTTGGTATTCCTTCTCAATATGGCTATATGACGGTATGTGCTCCGTCATGCCATGACTGCTCAACCTTGCGTGCTTGGTGGGAAGAAGATGACGAAAGAAGGCAGCGATATTTTAAGAATGTGGTGGGGTCTGACATGTCACCACCTGCTCGATGTGTTCCAGAGATTGCACATTTCATCTTAAGGCAACATGTTGAAGCTCCATCAATGTGGGCCATTTTTCCGCTTCAGGATTTGTTAGCGTTGAAAGAAGAATACACAACACGCCCTGCAAAAGAGGAGACGATCAATGACCCCACAAATCCCAAACACTATTGGAGATACCGTGTACATGTGACAATGGAGGCTTTGATCAAGGATAATGAACTCATATCGACCATCAAGGATCTTGTCCGTTCGAGTGGAAGATCATATCCGGCAGTACAAGCCGAAAAACAACCTAGTCAGGAATCAGCAGCAGTTGCAGGTACAGAGAAGCAGAAAATGTCCAGCAGCAAAGATAAGGTTCATCCGGCAGCGTCATTGAACGGAGTTCCACAGAAGGAGATCGTGGCTGTTCGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

469

Amino Acids

54.75

Weight (kDa)

5.88

Isoelectric Point (pI)

52.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40840
fragaria_vesca	FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260
malus_domestica	MD00G1025200.v1.1
prunus_persica	Prupe.7G019400_v2.0.a1 Prupe.7G019400_v2.0.a1 Prupe.7G019400_v2.0.a1
pyrus_communis	pycom12g09050
rosa_chinensis	RchiOBHm_Chr3g0494731
rosa_laevigata	RLG00000022663
rosa_multiflora	Rmu_sc0000198.1_g000016
rosa_roxburghii	Rroxscaffold_6G00390950
rosa_rugosa	Rorug03G0268100
rosa_samantha	Rh3AG316600 Rh3BG351900 Rh3CG349000 Rh3DG351500
rosa_wichuraiana	Rw3G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	997
Acc36I	ACCTGC	3 cut(s)	712, 997, 1298
AciI	CCGC	3 cut(s)	147, 679, 1067
AclI	AACGTT	1 cut(s)	698
AclWI	GGATC	1 cut(s)	1236
AcsI	RAATTY	3 cut(s)	227, 335, 556
AcuI	CTGAAG	2 cut(s)	467, 1055
AfaI	GTAC	3 cut(s)	1173, 1266, 1312
AfiI	CCNNNNNNNGG	2 cut(s)	75, 213
AflII	CTTAAG	1 cut(s)	1024
AflIII	ACRYGT	3 cut(s)	978, 1033, 1174
AgsI	TTSAA	8 cut(s)	266, 574, 581, 631, 694, 1040, 1090, 1369
AluBI	AGCT	5 cut(s)	20, 193, 344, 445, 1043
AluI	AGCT	5 cut(s)	20, 193, 344, 445, 1043
Alw21I	GWGCWC	4 cut(s)	22, 118, 195, 886
Alw26I	GTCTC	2 cut(s)	471, 1118
AlwI	GGATC	1 cut(s)	1236
AoxI	GGCC	1 cut(s)	1056
ApeKI	GCWGC	4 cut(s)	946, 1298, 1335, 1358
ApoI	RAATTY	3 cut(s)	227, 335, 556
AseI	ATTAAT	1 cut(s)	797
Asp700I	GAANNNNTTC	1 cut(s)	452
AspLEI	GCGC	1 cut(s)	819
AspS9I	GGNCC	1 cut(s)	1056
AsuHPI	GGTGA	1 cut(s)	975
BanII	GRGCYC	2 cut(s)	22, 195
BarI	GAAGNNNNNNTAC	2 cut(s)	474, 506
BbsI	GAAGAC	1 cut(s)	489
Bbv12I	GWGCWC	4 cut(s)	22, 118, 195, 886
BbvI	GCAGC	4 cut(s)	958, 1310, 1347, 1370
BccI	CCATC	3 cut(s)	124, 1054, 1229
BceAI	ACGGC	1 cut(s)	509
BclI	TGATCA	2 cut(s)	160, 1194
BcoDI	GTCTC	2 cut(s)	471, 1118
BfaI	CTAG	2 cut(s)	791, 1284
BfmI	CTRYAG	1 cut(s)	314
BfrI	CTTAAG	1 cut(s)	1024
BfuAI	ACCTGC	3 cut(s)	712, 997, 1298
BglII	AGATCT	1 cut(s)	745
BisI	GCNGC	4 cut(s)	947, 1299, 1336, 1359
BlsI	GCNGC	4 cut(s)	948, 1300, 1337, 1360
BmgT120I	GGNCC	1 cut(s)	1056
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	1 cut(s)	771
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	1 cut(s)	489
BpmI	CTGGAG	2 cut(s)	9, 36
BpuEI	CTTGAG	1 cut(s)	316
BsaBI	GATNNNNATC	1 cut(s)	288
BsaI	GGTCTC	1 cut(s)	471
BsaJI	CCNNGG	1 cut(s)	551
BsaXI	ACNNNNNCTCC	5 cut(s)	34, 71, 101, 1153, 1183
Bsc4I	CCNNNNNNNGG	2 cut(s)	75, 213
Bse118I	RCCGGY	1 cut(s)	660
Bse1I	ACTGG	2 cut(s)	19, 217
Bse8I	GATNNNNATC	1 cut(s)	288
BseDI	CCNNGG	1 cut(s)	551
BseGI	GGATG	3 cut(s)	8, 772, 1351
BseJI	GATNNNNATC	1 cut(s)	288
BseLI	CCNNNNNNNGG	2 cut(s)	75, 213
BseNI	ACTGG	2 cut(s)	19, 217
BseRI	GAGGAG	3 cut(s)	12, 95, 1136
BseXI	GCAGC	4 cut(s)	958, 1310, 1347, 1370
BshFI	GGCC	1 cut(s)	1058
BsiHKAI	GWGCWC	4 cut(s)	22, 118, 195, 886
BsiSI	CCGG	3 cut(s)	661, 1259, 1355
BslI	CCNNNNNNNGG	2 cut(s)	75, 213
BsmAI	GTCTC	2 cut(s)	471, 1118
BsmBI	CGTCTC	1 cut(s)	1118
BsmI	GAATGC	2 cut(s)	691, 810
BsnI	GGCC	1 cut(s)	1058
Bso31I	GGTCTC	1 cut(s)	471
Bsp1286I	GDGCHC	4 cut(s)	22, 118, 195, 886
Bsp1407I	TGTACA	1 cut(s)	1171
Bsp143I	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
BspACI	CCGC	3 cut(s)	147, 679, 1067
BspANI	GGCC	1 cut(s)	1058
BspMAI	CTGCAG	1 cut(s)	318
BspMI	ACCTGC	3 cut(s)	712, 997, 1298
BspPI	GGATC	1 cut(s)	1236
BspTI	CTTAAG	1 cut(s)	1024
BspTNI	GGTCTC	1 cut(s)	471
BsrFI	RCCGGY	1 cut(s)	660
BsrGI	TGTACA	1 cut(s)	1171
BsrI	ACTGG	2 cut(s)	19, 217
BssAI	RCCGGY	1 cut(s)	660
BssECI	CCNNGG	1 cut(s)	551
BssMI	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
BssT1I	CCWWGG	1 cut(s)	551
Bst4CI	ACNGT	2 cut(s)	877, 1169
BstAFI	CTTAAG	1 cut(s)	1024
BstAPI	GCANNNNNTGC	1 cut(s)	1304
BstAUI	TGTACA	1 cut(s)	1171
BstC8I	GCNNGC	4 cut(s)	114, 732, 821, 915
BstDEI	CTNAG	1 cut(s)	248
BstF5I	GGATG	3 cut(s)	8, 772, 1351
BstHHI	GCGC	1 cut(s)	819
BstKTI	GATC	9 cut(s)	163, 292, 511, 748, 1131, 1197, 1231, 1253, 1392
BstMAI	GTCTC	2 cut(s)	471, 1118
BstMBI	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
BstMWI	GCNNNNNNNGC	5 cut(s)	300, 816, 900, 1268, 1304
BstNSI	RCATGY	5 cut(s)	206, 823, 982, 1037, 1178
BstSFI	CTRYAG	1 cut(s)	314
BstV1I	GCAGC	4 cut(s)	958, 1310, 1347, 1370
BstV2I	GAAGAC	1 cut(s)	489
BstX2I	RGATCY	2 cut(s)	745, 1228
BstXI	CCANNNNNNTGG	1 cut(s)	1053
BstYI	RGATCY	2 cut(s)	745, 1228
BsuRI	GGCC	1 cut(s)	1058
BtsCI	GGATG	3 cut(s)	8, 772, 1351
BtsIMutI	CAGTG	1 cut(s)	12
BveI	ACCTGC	3 cut(s)	712, 997, 1298
Cac8I	GCNNGC	4 cut(s)	114, 732, 821, 915
CfoI	GCGC	1 cut(s)	819
Cfr10I	RCCGGY	1 cut(s)	660
Cfr13I	GGNCC	1 cut(s)	1056
CseI	GACGC	1 cut(s)	1350
Csp6I	GTAC	3 cut(s)	1172, 1265, 1311
CviQI	GTAC	3 cut(s)	1172, 1265, 1311
DdeI	CTNAG	1 cut(s)	248
DpnI	GATC	9 cut(s)	162, 291, 510, 747, 1130, 1196, 1230, 1252, 1391
DpnII	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
Ecl136II	GAGCTC	2 cut(s)	20, 193
Eco130I	CCWWGG	1 cut(s)	551
Eco24I	GRGCYC	2 cut(s)	22, 195
Eco31I	GGTCTC	1 cut(s)	471
Eco53kI	GAGCTC	2 cut(s)	20, 193
Eco57I	CTGAAG	2 cut(s)	467, 1055
EcoICRI	GAGCTC	2 cut(s)	20, 193
EcoT14I	CCWWGG	1 cut(s)	551
EcoT22I	ATGCAT	1 cut(s)	106
EcoT38I	GRGCYC	2 cut(s)	22, 195
ErhI	CCWWGG	1 cut(s)	551
Esp3I	CGTCTC	1 cut(s)	1118
FalI	AAGNNNNNCTT	2 cut(s)	657, 689
FauI	CCCGC	1 cut(s)	672
FauNDI	CATATG	1 cut(s)	278
FbaI	TGATCA	2 cut(s)	160, 1194
Fnu4HI	GCNGC	4 cut(s)	947, 1299, 1336, 1359
FokI	GGATG	2 cut(s)	759, 1338
FriOI	GRGCYC	2 cut(s)	22, 195
Fsp4HI	GCNGC	4 cut(s)	947, 1299, 1336, 1359
FspBI	CTAG	2 cut(s)	791, 1284
GlaI	GCGC	1 cut(s)	818
GluI	GCNGC	4 cut(s)	947, 1299, 1336, 1359
GsuI	CTGGAG	2 cut(s)	9, 36
HaeIII	GGCC	1 cut(s)	1058
HapII	CCGG	3 cut(s)	661, 1259, 1355
HgaI	GACGC	1 cut(s)	1350
HhaI	GCGC	1 cut(s)	819
Hin6I	GCGC	1 cut(s)	817
HinP1I	GCGC	1 cut(s)	817
HinfI	GANTC	2 cut(s)	298, 1292
HpaII	CCGG	3 cut(s)	661, 1259, 1355
HphI	GGTGA	1 cut(s)	975
Hpy166II	GTNNAC	3 cut(s)	500, 806, 1172
Hpy188I	TCNGA	4 cut(s)	341, 387, 724, 976
Hpy188III	TCNNGA	6 cut(s)	26, 254, 578, 1004, 1073, 1289
Hpy8I	GTNNAC	3 cut(s)	500, 806, 1172
HpyAV	CCTTC	5 cut(s)	246, 771, 864, 936, 1378
HpyCH4III	ACNGT	2 cut(s)	877, 1169
HpyCH4IV	ACGT	2 cut(s)	624, 698
HpyCH4V	TGCA	8 cut(s)	104, 316, 417, 475, 784, 1013, 1115, 1307
HpyF10VI	GCNNNNNNNGC	5 cut(s)	300, 816, 900, 1268, 1304
HpyF3I	CTNAG	1 cut(s)	248
HpySE526I	ACGT	2 cut(s)	624, 698
HspAI	GCGC	1 cut(s)	817
Ksp22I	TGATCA	2 cut(s)	160, 1194
Kzo9I	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
LmnI	GCTCC	7 cut(s)	17, 25, 190, 198, 341, 889, 1048
Lsp1109I	GCAGC	4 cut(s)	958, 1310, 1347, 1370
LweI	GCATC	1 cut(s)	771
MaeI	CTAG	2 cut(s)	791, 1284
MaeII	ACGT	2 cut(s)	624, 698
MaeIII	GTNAC	3 cut(s)	699, 981, 1177
MalI	GATC	9 cut(s)	162, 291, 510, 747, 1130, 1196, 1230, 1252, 1391
MboI	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
MboII	GAAGA	8 cut(s)	400, 494, 593, 755, 938, 941, 1106, 1260
MfeI	CAATTG	1 cut(s)	73
MflI	RGATCY	2 cut(s)	745, 1228
MhlI	GDGCHC	4 cut(s)	22, 118, 195, 886
MluCI	AATT	8 cut(s)	52, 73, 156, 227, 335, 367, 432, 556
MlyI	GAGTC	1 cut(s)	307
MnlI	CCTC	9 cut(s)	33, 73, 250, 265, 373, 403, 576, 1114, 1180
Mph1103I	ATGCAT	1 cut(s)	106
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	6 cut(s)	405, 597, 714, 797, 957, 1025
MslI	CAYNNNNRTG	1 cut(s)	1051
MspCI	CTTAAG	1 cut(s)	1024
MspI	CCGG	3 cut(s)	661, 1259, 1355
MunI	CAATTG	1 cut(s)	73
Mva1269I	GAATGC	2 cut(s)	691, 810
MwoI	GCNNNNNNNGC	5 cut(s)	300, 816, 900, 1268, 1304
NdeI	CATATG	1 cut(s)	278
NdeII	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
NmuCI	GTSAC	2 cut(s)	981, 1177
NsiI	ATGCAT	1 cut(s)	106
NspI	RCATGY	5 cut(s)	206, 823, 982, 1037, 1178
PaeI	GCATGC	1 cut(s)	823
PaqCI	CACCTGC	1 cut(s)	997
PciI	ACATGT	3 cut(s)	978, 1033, 1174
PctI	GAATGC	2 cut(s)	691, 810
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	1 cut(s)	1292
PkrI	GCNGC	4 cut(s)	948, 1300, 1337, 1360
PleI	GAGTC	1 cut(s)	306
PpsI	GAGTC	1 cut(s)	306
PscI	ACATGT	3 cut(s)	978, 1033, 1174
PshBI	ATTAAT	1 cut(s)	797
Psp124BI	GAGCTC	2 cut(s)	22, 195
Psp1406I	AACGTT	1 cut(s)	698
PspPI	GGNCC	1 cut(s)	1056
PstI	CTGCAG	1 cut(s)	318
PsuI	RGATCY	2 cut(s)	745, 1228
RsaI	GTAC	3 cut(s)	1173, 1266, 1312
RsaNI	GTAC	3 cut(s)	1172, 1265, 1311
RseI	CAYNNNNRTG	1 cut(s)	1051
SacI	GAGCTC	2 cut(s)	22, 195
SaqAI	TTAA	6 cut(s)	405, 597, 714, 797, 957, 1025
SatI	GCNGC	4 cut(s)	947, 1299, 1336, 1359
Sau3AI	GATC	9 cut(s)	160, 289, 508, 745, 1128, 1194, 1228, 1250, 1389
Sau96I	GGNCC	1 cut(s)	1056
SchI	GAGTC	1 cut(s)	307
SduI	GDGCHC	4 cut(s)	22, 118, 195, 886
SfaNI	GCATC	1 cut(s)	771
SfcI	CTRYAG	1 cut(s)	314
SmiMI	CAYNNNNRTG	1 cut(s)	1051
SmlI	CTYRAG	2 cut(s)	295, 1024
SmoI	CTYRAG	2 cut(s)	295, 1024
SphI	GCATGC	1 cut(s)	823
Sse9I	AATT	8 cut(s)	52, 73, 156, 227, 335, 367, 432, 556
SsiI	CCGC	3 cut(s)	147, 679, 1067
SspI	AATATT	1 cut(s)	323
SspMI	CTAG	2 cut(s)	791, 1284
SstI	GAGCTC	2 cut(s)	22, 195
StyI	CCWWGG	1 cut(s)	551
TaaI	ACNGT	2 cut(s)	877, 1169
TaiI	ACGT	2 cut(s)	627, 701
TaqI	TCGA	5 cut(s)	89, 232, 994, 1217, 1241
TasI	AATT	8 cut(s)	52, 73, 156, 227, 335, 367, 432, 556
TatI	WGTACW	2 cut(s)	1171, 1264
TfiI	GAWTC	1 cut(s)	1292
Tru1I	TTAA	6 cut(s)	405, 597, 714, 797, 957, 1025
Tru9I	TTAA	6 cut(s)	405, 597, 714, 797, 957, 1025
TscAI	CASTG	1 cut(s)	19
TseFI	GTSAC	2 cut(s)	981, 1177
TseI	GCWGC	4 cut(s)	946, 1298, 1335, 1358
Tsp45I	GTSAC	2 cut(s)	981, 1177
TspDTI	ATGAA	9 cut(s)	17, 336, 393, 495, 761, 843, 1009, 1221, 1340
TspGWI	ACGGA	3 cut(s)	876, 1226, 1386
TspRI	CASTG	1 cut(s)	19
Vha464I	CTTAAG	1 cut(s)	1024
VspI	ATTAAT	1 cut(s)	797
XapI	RAATTY	3 cut(s)	227, 335, 556
XceI	RCATGY	5 cut(s)	206, 823, 982, 1037, 1178
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	791, 1284
Zsp2I	ATGCAT	1 cut(s)	106

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.