Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0009188

Physical Location & Seq

Genomic Coordinates Forward (+)

43621342 .. 43631756

Gene Structure 10415 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ45724

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2943 bp

ATGGTAGAATTGGGATTGAGCAGGGCCAGCAAACCGGTGAGTGTGAGCTTCAGAATACCATATTACACACAGTGGGGCCAAAGCCTGGTGGTGTGCGGCTCCGAACCGGTGCTTGGTTCTTGGAATGTGAAGAGGGGTCTGCAGTTGAGTCCTGTTCACCAGGGTGATGAGCTCATATGGTTTGGCACCATTTCTGTCCCCAAAGGGTTTGGATCGTGCGAGTACAGTTACTACGTTGTGGATGATGATCGGAATGTTCTCCGATGGGAGATGGGAAGCAAGCGTCGGCTTCTTTTGCCTCAGGCCATTCAGGAAGGAGAGCTGCTTCACTTCCATGACTTTTGGCAGGTTGGTGCCGATGCAATTCCTTTCAGAAGTGCCTTCAAGGACGTCATCTTTCGTGGAGACTGGAGTTTGGAGGTTGAGAAACCTCTAGGAGTCATCCAAAATTCATTGCAGAATGATGATTCTGTTCTCGTCCATTTCAAAATTTGCTGTCCAAATATAGAAGAAGGAACATCGATTTACATTACTGGTAGTACCTCAAAGTTGGGGAATTGGAAGGCACAGGATGGGCTTAAACTGAGCTATTCTGGTGAATCTACTTGGCATAAAGACTGTGTCTTGCTGAAAGGGGACTTCCCGATAAAATATCCTTTTGGAGCCTTTAAATCTTTAAAATACTGTAAATATAGCAAAGGAGGAAACATTTCTTCTGAAACTGGTCCAAACCGCGAAATTGCTCTCGACTCCTTAAGTACTGAACCAAGATACCTTTTCTGTTCAGATGGCATGTTGCGAGAAATGCCTTGGCGGGGGGCTGGTGTTGCAATCCCAATGTTCTCTATTAGATCAGAAACTGATCTTGGTGTTGGAGAGTTTCTTGACCTGAAATTACTTGTTGACTGGGCTGCAGAGTCTGGCTTTCATTTAGTTCAGCTTTTACCCATTAATGATACATCCGTGTATGGAATGTGGTGGGATTCATATCCTTACAGCTCACTTTCTGTATATGCATTGCATCCTTTATACTTGAGAGTACAGGCACTTTCAGAAAACATCCCCAAGGATATCAAGGTAGAGATTCAGAAGGCAAAAGAAGAATTGGAGGGAAAGGATGTTGATTACGAGGCTACCTTGACCACTAAACTCTCAATTGCAAAGAAAATATTTGCCCAAGAGAAGGATAAGATTCTCAGCTCCAATTCGTTCCAGAAATTTTTCTCTGAGAATCAGGAATGGTTGAAACCCTATGCGGCCTTCTGTTTTTTGCGGGACTTCTTTGAAACATCAGATCACAGTCAATGGGGTCGGTTTTCCCAGTTTTCAATAGAAAAGCTAGAGAAACTCATCTCTAAAGACAGCATTCACTATTGTGAAATTTGCTTCCATTATTACATCCAATTTCATTTGCATATGCAGCTGTCGGAAGCTGCAGAATATGCAAGAAAGAAAGGAGTAGTATTGAAAGGAGACTTGCCTATTGGTGTCGGTAGAGACAGTGTAGATACGTGGGTCTATCCAAATCTGTTTCGCATGAACACATCTACTGGAGCTCCTCCAGATTATTTTGATAAAAATGGGCAGAACTGGGGTTTCCCTACTTACAATTGGGACGAGATGGCCAAAGACAATTATGCCTGGTGGCGTGCTCGATTGACACAGATGGCAAAATACTTTACAGCTTACCGGATTGACCATATATTGGGGTTCTTTCGTATCTGGGAACTCCCAGAGCATGCCATTACTGGTCTCGTTGGAAAATTTCGTCCTTCCATTCCTCTAAGTCAGGAAGAACTTGAAAGAGAGGGCATATGGGACTTTGATCGCTTGGCTCGTCCATATATCCCACAGGAAATTTTACAGATTAAGTTTGGAGATTCATGGACTTTTGTTGCTTCGAGTTTTCTGAATGAATATCAGAAGAACCGCTATGAGTTTAAGGAAGACTGCAACACAGAGAAAAAAATTGCTTCCAAGCTGAAGTCATTTTCAGGAAGATCGTTGTTGCAGAATGAAGACCACATTAGGCATGAGCTCTTTGATATTTTACAGAATATAGTTCTGATAAGGGATCCAGAAAATCCAAGGAACTTCTATCCTCGCTTCAATCTCGAAGAGACTTCAAGTTTTAAGGATTTGGATGATCACTGCAAGAATGTACTGAAACGGTTATACTATGATTACTACTTCCATCGACAAGAAAATCTTTGGCATCAAAATGCATTGAAGACACTGCCTGCTCTGCTGAACTCGTCGGATATGCTAGCTTGTGGGGAAGATCTAGGGCTTATTCCTTCTTGTGTTTATCCTGTGATGCAAGAACTTGGATTAATAGGTTTACGCATTCAACGTATGCCTAGTGAGCCTGATCTGGAGTTTGGTATCCCTTCTCGATACAATTATATGACAGTGTGTGCTCCATCATGCCATGACTGTTCAACGTTGCGTGCTTGGTGGGAAGAAGATGAAGAAAGGAGGCAGCGATTTTTTAGCAGTATGGTGGGATCTCACTTGTTGCCACCCAGTCGCTGTGTTCCAGAGATTGCAAATTTCATCTTAAGGCAACATTTTGAAGCTCCATCAATGTGGGCAATTTTTCCTCTTCAGGATTTGTTGATTTTGAAAGAAGAATACACAACACGCCCTGCAAAAGAGGAGACGATCAATGACCCGACAAATCCGAAGCATTATTGGAGATATCGTGTACATGTGACATTGGAGGCTTTGATCAAGGATAAGGAGCTCACATCAATCATCAAAGACCTCGTGCGTGGAAGTGGAAGATCACATCCGGGGAAACAAGCTGAGAAACAAGTGATTCAGGAATCACCTGTTGCAACCACAGAGAAGAAGCAGATTGCCAGCAGCAAAGAAAAGGCTCAAGTGGCAACTCCACTGAACGGAGTACCGCGGAAGGAGGCTGTTGCTGTTCCTAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000023 GO:0000025 GO:0000272 GO:0001871 GO:0003674 GO:0003824 GO:0004133 GO:0004134 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005977 GO:0005982 GO:0005983 GO:0005984 GO:0006073 GO:0006091 GO:0006112 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009251 GO:0009311 GO:0009313 GO:0009987 GO:0010297 GO:0015980 GO:0016052 GO:0016740 GO:0016757 GO:0016758 GO:0030246 GO:0030247 GO:0043170 GO:0044042 GO:0044237 GO:0044238 GO:0044247 GO:0044248 GO:0044260 GO:0044262 GO:0044264 GO:0044275 GO:0044424 GO:0044444 GO:0044464 GO:0046352 GO:0055114 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00500 ko01100 map00500 map01100

Pfam Domains

Protein Families

CBM_20 Glyco_hydro_77

Protein Analysis

980

Amino Acids

113.16

Weight (kDa)

6.09

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CBM_20	PF00686	13 - 104	8.1e-22	Starch binding domain
CBM_20	PF00686	158 - 250	1.1e-10	Starch binding domain
Glyco_hydro_77	PF02446	278 - 905	4.9e-145	4-alpha-glucanotransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40840
fragaria_vesca	FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260 FvH4_1g29260
malus_domestica	MD00G1025200.v1.1
prunus_persica	Prupe.7G019400_v2.0.a1 Prupe.7G019400_v2.0.a1 Prupe.7G019400_v2.0.a1
pyrus_communis	pycom12g09050
rosa_chinensis	RchiOBHm_Chr3g0494731
rosa_laevigata	RLG00000022663
rosa_multiflora	Rmu_sc0000198.1_g000016
rosa_roxburghii	Rroxscaffold_6G00390950
rosa_rugosa	Rorug03G0268100
rosa_samantha	Rh3AG316600 Rh3BG351900 Rh3CG349000 Rh3DG351500
rosa_wichuraiana	Rw3G027630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	393
Acc36I	ACCTGC	1 cut(s)	337
AccB1I	GGYRCC	2 cut(s)	185, 353
AccB7I	CCANNNNNTGG	2 cut(s)	85, 1705
AccII	CGCG	2 cut(s)	735, 2914
AciI	CCGC	8 cut(s)	96, 733, 814, 1256, 1273, 1930, 2912, 2914
AclI	AACGTT	1 cut(s)	2444
AclWI	GGATC	4 cut(s)	220, 2069, 2082, 2515
AcoI	YGGCCR	1 cut(s)	1623
AcsI	RAATTY	7 cut(s)	448, 489, 1217, 1380, 1763, 1857, 2551
AcuI	CTGAAG	3 cut(s)	34, 2003, 2591
AcyI	GRCGYC	1 cut(s)	390
AdeI	CACNNNGTG	1 cut(s)	72
AfaI	GTAC	7 cut(s)	224, 541, 760, 1041, 2163, 2709, 2910
AfiI	CCNNNNNNNGG	6 cut(s)	85, 113, 815, 1183, 1705, 2903
AflII	CTTAAG	2 cut(s)	754, 2560
AflIII	ACRYGT	1 cut(s)	2710
AgeI	ACCGGT	2 cut(s)	34, 106
AjnI	CCWGG	3 cut(s)	84, 159, 1640
AjuI	GAANNNNNNNTTGG	4 cut(s)	96, 128, 849, 881
AleI	CACNNNNGTG	2 cut(s)	162, 1374
Alw21I	GWGCWC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
Alw26I	GTCTC	6 cut(s)	399, 1467, 1491, 1757, 2114, 2654
AlwI	GGATC	4 cut(s)	220, 2069, 2082, 2515
AlwNI	CAGNNNCTG	3 cut(s)	860, 920, 2532
AoxI	GGCC	5 cut(s)	24, 76, 303, 1257, 1623
ApeKI	GCWGC	6 cut(s)	322, 911, 1420, 1433, 2482, 2868
ApoI	RAATTY	7 cut(s)	448, 489, 1217, 1380, 1763, 1857, 2551
AseI	ATTAAT	2 cut(s)	951, 2333
AsiGI	ACCGGT	2 cut(s)	34, 106
Asp700I	GAANNNNTTC	2 cut(s)	709, 1220
AspS9I	GGNCC	3 cut(s)	24, 76, 725
AsuC2I	CCSGG	1 cut(s)	2796
AsuHPI	GGTGA	5 cut(s)	49, 149, 176, 608, 2823
AsuNHI	GCTAGC	1 cut(s)	2266
AvaII	GGWCC	1 cut(s)	725
AxyI	CCTNAGG	1 cut(s)	300
BaeI	ACNNNNGTAYC	4 cut(s)	948, 981, 1500, 1533
BalI	TGGCCA	1 cut(s)	1625
BamHI	GGATCC	1 cut(s)	2074
BanI	GGYRCC	2 cut(s)	185, 353
BanII	GRGCYC	4 cut(s)	174, 1558, 2040, 2748
BauI	CACGAG	1 cut(s)	2768
BbsI	GAAGAC	3 cut(s)	1953, 2025, 2237
Bbv12I	GWGCWC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
BbvI	GCAGC	6 cut(s)	309, 898, 1420, 1432, 2494, 2880
BccI	CCATC	9 cut(s)	258, 265, 566, 782, 1615, 1660, 2202, 2431, 2590
BciT130I	CCWGG	3 cut(s)	86, 161, 1642
BciVI	GTATCC	1 cut(s)	2396
BclI	TGATCA	2 cut(s)	2146, 2730
BcnI	CCSGG	1 cut(s)	2796
BcoDI	GTCTC	6 cut(s)	399, 1467, 1491, 1757, 2114, 2654
BfaI	CTAG	5 cut(s)	434, 1340, 2267, 2285, 2361
BfmI	CTRYAG	3 cut(s)	140, 912, 1434
BfrI	CTTAAG	2 cut(s)	754, 2560
BfuAI	ACCTGC	1 cut(s)	337
BfuI	GTATCC	1 cut(s)	2396
BglII	AGATCT	1 cut(s)	2281
BisI	GCNGC	8 cut(s)	97, 323, 912, 1257, 1421, 1434, 2483, 2869
BlsI	GCNGC	8 cut(s)	98, 324, 913, 1258, 1422, 1435, 2484, 2870
BmcAI	AGTACT	1 cut(s)	760
Bme1390I	CCNGG	4 cut(s)	86, 161, 1642, 2796
Bme18I	GGWCC	1 cut(s)	725
BmgT120I	GGNCC	3 cut(s)	24, 76, 725
BmiI	GGNNCC	6 cut(s)	77, 100, 187, 355, 664, 2076
BmrFI	CCNGG	4 cut(s)	86, 161, 1642, 2796
BmrI	ACTGGG	4 cut(s)	916, 1315, 1600, 2520
BmsI	GCATC	4 cut(s)	349, 1030, 2224, 2307
BmtI	GCTAGC	1 cut(s)	2270
BmuI	ACTGGG	4 cut(s)	916, 1315, 1600, 2520
BpiI	GAAGAC	3 cut(s)	1953, 2025, 2237
BpmI	CTGGAG	4 cut(s)	430, 1545, 1572, 2396
BpuEI	CTTGAG	2 cut(s)	1054, 2868
BpuMI	CCSGG	1 cut(s)	2796
Bsa29I	ATCGAT	1 cut(s)	521
BsaAI	YACGTR	1 cut(s)	1512
BsaBI	GATNNNNATC	2 cut(s)	246, 987
BsaHI	GRCGYC	1 cut(s)	390
BsaI	GGTCTC	1 cut(s)	1757
BsaJI	CCNNGG	6 cut(s)	160, 809, 1065, 2087, 2795, 2912
BsaWI	WCCGGW	3 cut(s)	34, 106, 1689
BsaXI	ACNNNNNCTCC	4 cut(s)	1540, 1570, 2689, 2719
Bsc4I	CCNNNNNNNGG	6 cut(s)	85, 113, 815, 1183, 1705, 2903
Bse118I	RCCGGY	2 cut(s)	34, 106
Bse1I	ACTGG	9 cut(s)	413, 538, 727, 911, 1321, 1555, 1595, 1753, 2526
Bse21I	CCTNAGG	1 cut(s)	300
Bse3DI	GCAATG	2 cut(s)	452, 1016
Bse8I	GATNNNNATC	2 cut(s)	246, 987
BseBI	CCWGG	3 cut(s)	86, 161, 1642
BseCI	ATCGAT	1 cut(s)	521
BseDI	CCNNGG	6 cut(s)	160, 809, 1065, 2087, 2795, 2912
BseJI	GATNNNNATC	2 cut(s)	246, 987
BseLI	CCNNNNNNNGG	6 cut(s)	85, 113, 815, 1183, 1705, 2903
BseMI	GCAATG	2 cut(s)	452, 1016
BseMII	CTCAG	5 cut(s)	314, 575, 1210, 1218, 2799
BseNI	ACTGG	9 cut(s)	413, 538, 727, 911, 1321, 1555, 1595, 1753, 2526
BseRI	GAGGAG	2 cut(s)	1548, 2672
BseXI	GCAGC	6 cut(s)	309, 898, 1420, 1432, 2494, 2880
Bsh1236I	CGCG	2 cut(s)	735, 2914
BshFI	GGCC	5 cut(s)	26, 78, 305, 1259, 1625
BshNI	GGYRCC	2 cut(s)	185, 353
BshTI	ACCGGT	2 cut(s)	34, 106
BshVI	ATCGAT	1 cut(s)	521
BsiHKAI	GWGCWC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
BsiSI	CCGG	4 cut(s)	35, 107, 1690, 2795
BslFI	GGGAC	5 cut(s)	182, 650, 1289, 1628, 1832
BslI	CCNNNNNNNGG	6 cut(s)	85, 113, 815, 1183, 1705, 2903
BsmAI	GTCTC	6 cut(s)	399, 1467, 1491, 1757, 2114, 2654
BsmBI	CGTCTC	1 cut(s)	2654
BsmFI	GGGAC	5 cut(s)	182, 650, 1289, 1628, 1832
BsmI	GAATGC	2 cut(s)	1365, 2346
BsnI	GGCC	5 cut(s)	26, 78, 305, 1259, 1625
Bso31I	GGTCTC	1 cut(s)	1757
Bsp1286I	GDGCHC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
Bsp1407I	TGTACA	1 cut(s)	2707
BspACI	CCGC	8 cut(s)	96, 733, 814, 1256, 1273, 1930, 2912, 2914
BspANI	GGCC	5 cut(s)	26, 78, 305, 1259, 1625
BspCNI	CTCAG	5 cut(s)	313, 576, 1209, 1219, 2800
BspDI	ATCGAT	1 cut(s)	521
BspFNI	CGCG	2 cut(s)	735, 2914
BspLI	GGNNCC	6 cut(s)	77, 100, 187, 355, 664, 2076
BspMAI	CTGCAG	3 cut(s)	144, 916, 1438
BspMI	ACCTGC	1 cut(s)	337
BspOI	GCTAGC	1 cut(s)	2270
BspPI	GGATC	4 cut(s)	220, 2069, 2082, 2515
BspT107I	GGYRCC	2 cut(s)	185, 353
BspTI	CTTAAG	2 cut(s)	754, 2560
BspTNI	GGTCTC	1 cut(s)	1757
BsrDI	GCAATG	2 cut(s)	452, 1016
BsrFI	RCCGGY	2 cut(s)	34, 106
BsrGI	TGTACA	1 cut(s)	2707
BsrI	ACTGG	9 cut(s)	413, 538, 727, 911, 1321, 1555, 1595, 1753, 2526
BssAI	RCCGGY	2 cut(s)	34, 106
BssECI	CCNNGG	6 cut(s)	160, 809, 1065, 2087, 2795, 2912
BssNI	GRCGYC	1 cut(s)	390
BssSI	CACGAG	1 cut(s)	2768
BssT1I	CCWWGG	3 cut(s)	809, 1065, 2087
Bst2BI	CACGAG	1 cut(s)	2768
Bst2UI	CCWGG	3 cut(s)	86, 161, 1642
Bst4CI	ACNGT	9 cut(s)	72, 227, 620, 686, 1301, 1502, 2172, 2413, 2438
Bst6I	CTCTTC	3 cut(s)	125, 2112, 2610
BstACI	GRCGYC	1 cut(s)	390
BstAFI	CTTAAG	2 cut(s)	754, 2560
BstAPI	GCANNNNNTGC	1 cut(s)	1442
BstAUI	TGTACA	1 cut(s)	2707
BstBAI	YACGTR	1 cut(s)	1512
BstC8I	GCNNGC	8 cut(s)	28, 281, 1650, 1740, 2241, 2268, 2451, 2866
BstDEI	CTNAG	6 cut(s)	300, 584, 1196, 1227, 1784, 2808
BstDSI	CCRYGG	1 cut(s)	2912
BstFNI	CGCG	2 cut(s)	735, 2914
BstMAI	GTCTC	6 cut(s)	399, 1467, 1491, 1757, 2114, 2654
BstMWI	GCNNNNNNNGC	9 cut(s)	27, 295, 805, 827, 1420, 1442, 2245, 2365, 2888
BstNI	CCWGG	3 cut(s)	86, 161, 1642
BstNSI	RCATGY	3 cut(s)	796, 1742, 2714
BstSCI	CCNGG	4 cut(s)	84, 159, 1640, 2794
BstSFI	CTRYAG	3 cut(s)	140, 912, 1434
BstUI	CGCG	2 cut(s)	735, 2914
BstV1I	GCAGC	6 cut(s)	309, 898, 1420, 1432, 2494, 2880
BstV2I	GAAGAC	3 cut(s)	1953, 2025, 2237
BstX2I	RGATCY	3 cut(s)	2074, 2281, 2507
BstXI	CCANNNNNNTGG	1 cut(s)	2589
BstYI	RGATCY	3 cut(s)	2074, 2281, 2507
Bsu15I	ATCGAT	1 cut(s)	521
Bsu36I	CCTNAGG	1 cut(s)	300
BsuI	GTATCC	1 cut(s)	2396
BsuRI	GGCC	5 cut(s)	26, 78, 305, 1259, 1625
BsuTUI	ATCGAT	1 cut(s)	521
BtgI	CCRYGG	1 cut(s)	2912
BtsI	GCAGTG	2 cut(s)	2149, 2234
BtsIMutI	CAGTG	6 cut(s)	77, 1507, 2149, 2234, 2418, 2897
BveI	ACCTGC	1 cut(s)	337
Cac8I	GCNNGC	8 cut(s)	28, 281, 1650, 1740, 2241, 2268, 2451, 2866
CaiI	CAGNNNCTG	3 cut(s)	860, 920, 2532
Cfr10I	RCCGGY	2 cut(s)	34, 106
Cfr13I	GGNCC	3 cut(s)	24, 76, 725
Cfr42I	CCGCGG	1 cut(s)	2915
ClaI	ATCGAT	1 cut(s)	521
CseI	GACGC	1 cut(s)	272
Csp6I	GTAC	7 cut(s)	223, 540, 759, 1040, 2162, 2708, 2909
CspAI	ACCGGT	2 cut(s)	34, 106
CviAII	CATG	9 cut(s)	335, 793, 1537, 1739, 1884, 2033, 2427, 2432, 2711
CviQI	GTAC	7 cut(s)	223, 540, 759, 1040, 2162, 2708, 2909
DdeI	CTNAG	6 cut(s)	300, 584, 1196, 1227, 1784, 2808
DraI	TTTAAA	2 cut(s)	670, 678
DraIII	CACNNNGTG	1 cut(s)	72
EaeI	YGGCCR	1 cut(s)	1623
Eam1104I	CTCTTC	3 cut(s)	125, 2112, 2610
EarI	CTCTTC	3 cut(s)	125, 2112, 2610
Ecl136II	GAGCTC	4 cut(s)	172, 1556, 2038, 2746
Eco130I	CCWWGG	3 cut(s)	809, 1065, 2087
Eco24I	GRGCYC	4 cut(s)	174, 1558, 2040, 2748
Eco31I	GGTCTC	1 cut(s)	1757
Eco32I	GATATC	2 cut(s)	1072, 2702
Eco47I	GGWCC	1 cut(s)	725
Eco53kI	GAGCTC	4 cut(s)	172, 1556, 2038, 2746
Eco57I	CTGAAG	3 cut(s)	34, 2003, 2591
Eco81I	CCTNAGG	1 cut(s)	300
EcoICRI	GAGCTC	4 cut(s)	172, 1556, 2038, 2746
EcoRII	CCWGG	3 cut(s)	84, 159, 1640
EcoRV	GATATC	2 cut(s)	1072, 2702
EcoT14I	CCWWGG	3 cut(s)	809, 1065, 2087
EcoT22I	ATGCAT	2 cut(s)	1018, 2227
EcoT38I	GRGCYC	4 cut(s)	174, 1558, 2040, 2748
ErhI	CCWWGG	3 cut(s)	809, 1065, 2087
Esp3I	CGTCTC	1 cut(s)	2654
FaeI	CATG	9 cut(s)	338, 796, 1540, 1742, 1887, 2036, 2430, 2435, 2714
FalI	AAGNNNNNCTT	2 cut(s)	2193, 2225
FaqI	GGGAC	5 cut(s)	182, 650, 1289, 1628, 1832
FatI	CATG	9 cut(s)	334, 792, 1536, 1738, 1883, 2032, 2426, 2431, 2710
FauI	CCCGC	2 cut(s)	807, 1266
FauNDI	CATATG	3 cut(s)	176, 1416, 1814
FbaI	TGATCA	2 cut(s)	2146, 2730
Fnu4HI	GCNGC	8 cut(s)	97, 323, 912, 1257, 1421, 1434, 2483, 2869
FriOI	GRGCYC	4 cut(s)	174, 1558, 2040, 2748
Fsp4HI	GCNGC	8 cut(s)	97, 323, 912, 1257, 1421, 1434, 2483, 2869
FspBI	CTAG	5 cut(s)	434, 1340, 2267, 2285, 2361
GluI	GCNGC	8 cut(s)	97, 323, 912, 1257, 1421, 1434, 2483, 2869
GsuI	CTGGAG	4 cut(s)	430, 1545, 1572, 2396
HaeIII	GGCC	5 cut(s)	26, 78, 305, 1259, 1625
HapII	CCGG	4 cut(s)	35, 107, 1690, 2795
HgaI	GACGC	1 cut(s)	272
Hin1I	GRCGYC	1 cut(s)	390
Hin1II	CATG	9 cut(s)	338, 796, 1540, 1742, 1887, 2036, 2430, 2435, 2714
HincII	GTYRAC	1 cut(s)	904
HindII	GTYRAC	1 cut(s)	904
HpaII	CCGG	4 cut(s)	35, 107, 1690, 2795
HphI	GGTGA	5 cut(s)	49, 149, 176, 608, 2823
Hpy166II	GTNNAC	4 cut(s)	157, 904, 2342, 2708
Hpy8I	GTNNAC	4 cut(s)	157, 904, 2342, 2708
Hpy99I	CGWCG	2 cut(s)	288, 2260
HpyCH4III	ACNGT	9 cut(s)	72, 227, 620, 686, 1301, 1502, 2172, 2413, 2438
HpyCH4IV	ACGT	5 cut(s)	234, 390, 1511, 2353, 2444
HpyF10VI	GCNNNNNNNGC	9 cut(s)	27, 295, 805, 827, 1420, 1442, 2245, 2365, 2888
HpyF3I	CTNAG	6 cut(s)	300, 584, 1196, 1227, 1784, 2808
HpySE526I	ACGT	5 cut(s)	234, 390, 1511, 2353, 2444
Hsp92I	GRCGYC	1 cut(s)	390
Hsp92II	CATG	9 cut(s)	338, 796, 1540, 1742, 1887, 2036, 2430, 2435, 2714
Ksp22I	TGATCA	2 cut(s)	2146, 2730
KspI	CCGCGG	1 cut(s)	2915
LmnI	GCTCC	8 cut(s)	104, 662, 1205, 1553, 1561, 2425, 2584, 2743
Lsp1109I	GCAGC	6 cut(s)	309, 898, 1420, 1432, 2494, 2880
LweI	GCATC	4 cut(s)	349, 1030, 2224, 2307
MaeI	CTAG	5 cut(s)	434, 1340, 2267, 2285, 2361
MaeII	ACGT	5 cut(s)	234, 390, 1511, 2353, 2444
MaeIII	GTNAC	2 cut(s)	227, 2713
MfeI	CAATTG	2 cut(s)	1155, 1609
MflI	RGATCY	3 cut(s)	2074, 2281, 2507
MhlI	GDGCHC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
MlsI	TGGCCA	1 cut(s)	1625
MluNI	TGGCCA	1 cut(s)	1625
MlyI	GAGTC	4 cut(s)	157, 447, 743, 926
MmeI	TCCRAC	4 cut(s)	853, 1407, 1738, 2238
Mox20I	TGGCCA	1 cut(s)	1625
Mph1103I	ATGCAT	2 cut(s)	1018, 2227
MroXI	GAANNNNTTC	2 cut(s)	709, 1220
MscI	TGGCCA	1 cut(s)	1625
MslI	CAYNNNNRTG	5 cut(s)	162, 333, 1374, 2220, 2587
Msp20I	TGGCCA	1 cut(s)	1625
MspA1I	CMGCKG	2 cut(s)	1423, 2914
MspCI	CTTAAG	2 cut(s)	754, 2560
MspI	CCGG	4 cut(s)	35, 107, 1690, 2795
MspR9I	CCNGG	4 cut(s)	86, 161, 1642, 2796
MunI	CAATTG	2 cut(s)	1155, 1609
Mva1269I	GAATGC	2 cut(s)	1365, 2346
MvaI	CCWGG	3 cut(s)	86, 161, 1642
MvnI	CGCG	2 cut(s)	735, 2914
MwoI	GCNNNNNNNGC	9 cut(s)	27, 295, 805, 827, 1420, 1442, 2245, 2365, 2888
NciI	CCSGG	1 cut(s)	2796
NdeI	CATATG	3 cut(s)	176, 1416, 1814
NheI	GCTAGC	1 cut(s)	2266
NlaIII	CATG	9 cut(s)	338, 796, 1540, 1742, 1887, 2036, 2430, 2435, 2714
NlaIV	GGNNCC	6 cut(s)	77, 100, 187, 355, 664, 2076
NmuCI	GTSAC	1 cut(s)	2713
NsiI	ATGCAT	2 cut(s)	1018, 2227
NspI	RCATGY	3 cut(s)	796, 1742, 2714
OliI	CACNNNNGTG	2 cut(s)	162, 1374
PaeI	GCATGC	1 cut(s)	1742
PciI	ACATGT	1 cut(s)	2710
PcsI	WCGNNNNNNNCGW	2 cut(s)	1834, 2350
PctI	GAATGC	2 cut(s)	1365, 2346
PdmI	GAANNNNTTC	2 cut(s)	709, 1220
PfeI	GAWTC	9 cut(s)	467, 599, 983, 1084, 1192, 1231, 1880, 2821, 2828
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	2 cut(s)	85, 1705
PinAI	ACCGGT	2 cut(s)	34, 106
PkrI	GCNGC	8 cut(s)	98, 324, 913, 1258, 1422, 1435, 2484, 2870
PleI	GAGTC	4 cut(s)	156, 446, 743, 925
PpsI	GAGTC	4 cut(s)	156, 446, 743, 925
Ppu21I	YACGTR	1 cut(s)	1512
PscI	ACATGT	1 cut(s)	2710
PshBI	ATTAAT	2 cut(s)	951, 2333
Psp124BI	GAGCTC	4 cut(s)	174, 1558, 2040, 2748
Psp1406I	AACGTT	1 cut(s)	2444
Psp6I	CCWGG	3 cut(s)	84, 159, 1640
PspGI	CCWGG	3 cut(s)	84, 159, 1640
PspN4I	GGNNCC	6 cut(s)	77, 100, 187, 355, 664, 2076
PspPI	GGNCC	3 cut(s)	24, 76, 725
PstI	CTGCAG	3 cut(s)	144, 916, 1438
PstNI	CAGNNNCTG	3 cut(s)	860, 920, 2532
PsuI	RGATCY	3 cut(s)	2074, 2281, 2507
PsyI	GACNNNGTC	1 cut(s)	620
PvuII	CAGCTG	1 cut(s)	1423
RsaI	GTAC	7 cut(s)	224, 541, 760, 1041, 2163, 2709, 2910
RsaNI	GTAC	7 cut(s)	223, 540, 759, 1040, 2162, 2708, 2909
RseI	CAYNNNNRTG	5 cut(s)	162, 333, 1374, 2220, 2587
SacI	GAGCTC	4 cut(s)	174, 1558, 2040, 2748
SacII	CCGCGG	1 cut(s)	2915
SatI	GCNGC	8 cut(s)	97, 323, 912, 1257, 1421, 1434, 2483, 2869
Sau96I	GGNCC	3 cut(s)	24, 76, 725
ScaI	AGTACT	1 cut(s)	760
SchI	GAGTC	4 cut(s)	157, 447, 743, 926
ScrFI	CCNGG	4 cut(s)	86, 161, 1642, 2796
SduI	GDGCHC	6 cut(s)	174, 1558, 1654, 2040, 2422, 2748
SfaNI	GCATC	4 cut(s)	349, 1030, 2224, 2307
SfcI	CTRYAG	3 cut(s)	140, 912, 1434
Sfr303I	CCGCGG	1 cut(s)	2915
SgrBI	CCGCGG	1 cut(s)	2915
SinI	GGWCC	1 cut(s)	725
SmiMI	CAYNNNNRTG	5 cut(s)	162, 333, 1374, 2220, 2587
SmlI	CTYRAG	4 cut(s)	754, 1033, 2560, 2883
SmoI	CTYRAG	4 cut(s)	754, 1033, 2560, 2883
SphI	GCATGC	1 cut(s)	1742
SsiI	CCGC	8 cut(s)	96, 733, 814, 1256, 1273, 1930, 2912, 2914
SspI	AATATT	1 cut(s)	1170
SspMI	CTAG	5 cut(s)	434, 1340, 2267, 2285, 2361
SstI	GAGCTC	4 cut(s)	174, 1558, 2040, 2748
StyD4I	CCNGG	4 cut(s)	84, 159, 1640, 2794
StyI	CCWWGG	3 cut(s)	809, 1065, 2087
TaaI	ACNGT	9 cut(s)	72, 227, 620, 686, 1301, 1502, 2172, 2413, 2438
TaiI	ACGT	5 cut(s)	237, 393, 1514, 2356, 2447
TaqI	TCGA	7 cut(s)	521, 747, 1654, 1901, 2115, 2197, 2395
TatI	WGTACW	5 cut(s)	222, 758, 1039, 2161, 2707
TauI	GCSGC	2 cut(s)	99, 1259
TfiI	GAWTC	9 cut(s)	467, 599, 983, 1084, 1192, 1231, 1880, 2821, 2828
TscAI	CASTG	6 cut(s)	77, 1507, 2156, 2241, 2418, 2904
TseFI	GTSAC	1 cut(s)	2713
TseI	GCWGC	6 cut(s)	322, 911, 1420, 1433, 2482, 2868
Tsp45I	GTSAC	1 cut(s)	2713
TspGWI	ACGGA	2 cut(s)	952, 2919
TspRI	CASTG	6 cut(s)	77, 1507, 2156, 2241, 2418, 2904
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	2 cut(s)	85, 1705
Vha464I	CTTAAG	2 cut(s)	754, 2560
VpaK11BI	GGWCC	1 cut(s)	725
VspI	ATTAAT	2 cut(s)	951, 2333
XapI	RAATTY	7 cut(s)	448, 489, 1217, 1380, 1763, 1857, 2551
XceI	RCATGY	3 cut(s)	796, 1742, 2714
XmnI	GAANNNNTTC	2 cut(s)	709, 1220
XspI	CTAG	5 cut(s)	434, 1340, 2267, 2285, 2361
ZraI	GACGTC	1 cut(s)	391
ZrmI	AGTACT	1 cut(s)	760
Zsp2I	ATGCAT	2 cut(s)	1018, 2227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.