pycom12g09090

Elongator complex protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0002825
Physical Location & Seq
Reverse (-)
10925537 .. 10928910
3374 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1137 bp
ATGGTGGAATGGGTTTGCAGAGCCCTTCGAGACGGTGCGTTGGAAGGCGAGCATGCACCTGCTCTCGCAATCAAGGACTCAATAGTCTCACCTCTCGGCTTCCAAGTTTTTGGTCACGTCCTCTCCCAGCTCTCCACCAACATTTCAGCCGGAAAATCTCAGTCACGAGGTCTTGTGCTCGTCGCGTTTTCTCGGAGTCCGTTGTATTATGTGAATTTGTTGAAGAGGAGAGGACTCGATAATTCCTCTCAGCAACGGATTCAGATTTTGGATTGTTACACGGACCCTCTTGGATGGAGAGAAGGGCTTGTGGAGTGTGGAAGTGCGAAAAATCTCCCTCATGAAGTTTACAAAGCAGCTAGTGTTTGCAGGAATGTGAAGGATGTGGACACGTTGCTCTCTTCAATCATTTCACTTGGAGAAGGATTGGTTGGACAAGGGAAAGTTAGTTTCAGTGTTGCAATAGATTCGGTAAATGAAATGTTAAGGCATGCAACTTTGTCATCAGGTTCTCGCCTTTTAAGCAACCTTCGCTGCTGTGAGCAAATTTCAAGCATCTTTTGGTTTTTCCATGCGGATCTTTGTGAAGAAAGGGTCACTGCTGTTATTGAATACATGTCCTCTATGGTGGCCAGCATAGAACCATTAATCCCATTTACAAATGGACACAGAGGTAATTCAGAGAATCTTTCTTTAGCTGAACGGAATTTTACACGAGGGAAATTTCATGTCAGATGCAAACGTAGAAATGGACGTGTCCGAGTGATGTTTGAAGAAATTCATGTTGGGCAGTCGGGCATCAACTTCACATCCCCTTCATCTGAAGATGGAGTAATCAATCAAGTCAATCAAGCCCTTTTGCCGAAGGTGCAATTCAATCTACAGCTGTCAGAGAAAGAGAAAAATGATAGGGCCAAGGTTGTACTTCCGTTTGAACACCAAGGAAATGGTAAACCCGTACAAATTTATGATGGTCGAAAATCTCTGATGGATAGCAAATATGATGCTGCACCTGCTTCAACTGTGAATTCAAACACCAATGATGAGTCTAGCAAGGGCGAAATAATATATTTTCGCGATTCAGAAGATGAGATGCCGGATTCTGATGAGGATCCTGATGATGATTTGGATATTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0032991 GO:0033588 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Elong_Iki1

Protein Analysis

379

Amino Acids

41.93

Weight (kDa)

5.57

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Elong_Iki1 PF10483 148 - 311 5.5e-11 Elongator subunit Iki1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 67, 1021
AasI GACNNNNNNGTC 1 cut(s) 83
Acc36I ACCTGC 2 cut(s) 67, 1021
AccII CGCG 2 cut(s) 185, 1077
AciI CCGC 1 cut(s) 575
AclWI GGATC 3 cut(s) 585, 1106, 1119
AcoI YGGCCR 1 cut(s) 630
AcsI RAATTY 7 cut(s) 214, 546, 706, 722, 777, 963, 1027
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 2 cut(s) 924, 960
AflIII ACRYGT 3 cut(s) 390, 615, 754
AgsI TTSAA 9 cut(s) 223, 405, 552, 611, 773, 877, 935, 1020, 1032
AjiI CACGTC 2 cut(s) 118, 755
AjuI GAANNNNNNNTTGG 4 cut(s) 414, 446, 768, 800
AloI GAACNNNNNNTCC 2 cut(s) 633, 665
AluBI AGCT 4 cut(s) 130, 359, 698, 886
AluI AGCT 4 cut(s) 130, 359, 698, 886
Alw21I GWGCWC 1 cut(s) 180
Alw26I GTCTC 2 cut(s) 24, 91
AlwI GGATC 3 cut(s) 585, 1106, 1119
AoxI GGCC 2 cut(s) 630, 912
ApeKI GCWGC 3 cut(s) 356, 534, 1007
ApoI RAATTY 7 cut(s) 214, 546, 706, 722, 777, 963, 1027
AseI ATTAAT 1 cut(s) 647
Asp700I GAANNNNTTC 1 cut(s) 777
AspS9I GGNCC 2 cut(s) 283, 912
AsuHPI GGTGA 1 cut(s) 81
AvaII GGWCC 1 cut(s) 283
BalI TGGCCA 1 cut(s) 632
BamHI GGATCC 1 cut(s) 1111
BanII GRGCYC 1 cut(s) 25
BauI CACGAG 2 cut(s) 165, 714
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 3 cut(s) 368, 521, 994
BccI CCATC 4 cut(s) 288, 821, 965, 982
BcgI CGANNNNNNTGC 2 cut(s) 450, 484
BcoDI GTCTC 2 cut(s) 24, 91
BfaI CTAG 2 cut(s) 360, 1050
BfmI CTRYAG 1 cut(s) 881
BfuAI ACCTGC 2 cut(s) 67, 1021
BisI GCNGC 3 cut(s) 357, 535, 1008
BlsI GCNGC 3 cut(s) 358, 536, 1009
Bme18I GGWCC 1 cut(s) 283
BmgBI CACGTC 2 cut(s) 118, 755
BmgT120I GGNCC 2 cut(s) 283, 912
BmiI GGNNCC 2 cut(s) 285, 1113
BmsI GCATC 5 cut(s) 564, 725, 807, 994, 1083
BsaBI GATNNNNATC 1 cut(s) 1110
BsaJI CCNNGG 2 cut(s) 915, 940
BsaXI ACNNNNNCTCC 2 cut(s) 107, 137
Bse8I GATNNNNATC 1 cut(s) 1110
BseDI CCNNGG 2 cut(s) 915, 940
BseGI GGATG 3 cut(s) 299, 388, 809
BseJI GATNNNNATC 1 cut(s) 1110
BseMII CTCAG 2 cut(s) 173, 263
BseRI GAGGAG 1 cut(s) 241
BseXI GCAGC 3 cut(s) 368, 521, 994
BseYI CCCAGC 1 cut(s) 126
BsgI GTGCAG 1 cut(s) 993
Bsh1236I CGCG 2 cut(s) 185, 1077
BshFI GGCC 2 cut(s) 632, 914
BsiHKAI GWGCWC 1 cut(s) 180
BsiSI CCGG 2 cut(s) 150, 1097
BsmAI GTCTC 2 cut(s) 24, 91
BsmBI CGTCTC 1 cut(s) 24
BsnI GGCC 2 cut(s) 632, 914
Bsp1286I GDGCHC 2 cut(s) 25, 180
Bsp143I GATC 2 cut(s) 577, 1111
Bsp68I TCGCGA 1 cut(s) 1077
BspACI CCGC 1 cut(s) 575
BspANI GGCC 2 cut(s) 632, 914
BspCNI CTCAG 2 cut(s) 172, 262
BspFNI CGCG 2 cut(s) 185, 1077
BspHI TCATGA 1 cut(s) 340
BspLI GGNNCC 2 cut(s) 285, 1113
BspMI ACCTGC 2 cut(s) 67, 1021
BspPI GGATC 3 cut(s) 585, 1106, 1119
BssECI CCNNGG 2 cut(s) 915, 940
BssMI GATC 2 cut(s) 577, 1111
BssSI CACGAG 2 cut(s) 165, 714
BssT1I CCWWGG 2 cut(s) 915, 940
Bst2BI CACGAG 2 cut(s) 165, 714
Bst4CI ACNGT 2 cut(s) 35, 1024
Bst6I CTCTTC 2 cut(s) 218, 406
BstC8I GCNNGC 4 cut(s) 50, 54, 492, 634
BstDEI CTNAG 2 cut(s) 159, 249
BstF5I GGATG 3 cut(s) 299, 388, 809
BstFNI CGCG 2 cut(s) 185, 1077
BstKTI GATC 2 cut(s) 580, 1114
BstMAI GTCTC 2 cut(s) 24, 91
BstMBI GATC 2 cut(s) 577, 1111
BstMWI GCNNNNNNNGC 4 cut(s) 522, 531, 868, 1013
BstNSI RCATGY 3 cut(s) 56, 494, 619
BstSFI CTRYAG 1 cut(s) 881
BstUI CGCG 2 cut(s) 185, 1077
BstV1I GCAGC 3 cut(s) 368, 521, 994
BstX2I RGATCY 2 cut(s) 577, 1111
BstXI CCANNNNNNTGG 2 cut(s) 110, 947
BstYI RGATCY 2 cut(s) 577, 1111
BsuRI GGCC 2 cut(s) 632, 914
BtrI CACGTC 2 cut(s) 118, 755
BtsCI GGATG 3 cut(s) 299, 388, 809
BtsI GCAGTG 1 cut(s) 597
BtsIMutI CAGTG 2 cut(s) 460, 597
BtuMI TCGCGA 1 cut(s) 1077
BveI ACCTGC 2 cut(s) 67, 1021
Cac8I GCNNGC 4 cut(s) 50, 54, 492, 634
CciI TCATGA 1 cut(s) 340
Cfr13I GGNCC 2 cut(s) 283, 912
Csp6I GTAC 2 cut(s) 923, 959
CviAII CATG 7 cut(s) 53, 341, 491, 572, 616, 728, 782
CviQI GTAC 2 cut(s) 923, 959
DdeI CTNAG 2 cut(s) 159, 249
DpnI GATC 2 cut(s) 579, 1113
DpnII GATC 2 cut(s) 577, 1111
DrdI GACNNNNNNGTC 1 cut(s) 83
DseDI GACNNNNNNGTC 1 cut(s) 83
EaeI YGGCCR 1 cut(s) 630
Eam1104I CTCTTC 2 cut(s) 218, 406
EarI CTCTTC 2 cut(s) 218, 406
Eco130I CCWWGG 2 cut(s) 915, 940
Eco24I GRGCYC 1 cut(s) 25
Eco47I GGWCC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 843
EcoRI GAATTC 1 cut(s) 1027
EcoT14I CCWWGG 2 cut(s) 915, 940
EcoT38I GRGCYC 1 cut(s) 25
ErhI CCWWGG 2 cut(s) 915, 940
Esp3I CGTCTC 1 cut(s) 24
FaeI CATG 7 cut(s) 56, 344, 494, 575, 619, 731, 785
FatI CATG 7 cut(s) 52, 340, 490, 571, 615, 727, 781
Fnu4HI GCNGC 3 cut(s) 357, 535, 1008
FokI GGATG 3 cut(s) 306, 395, 796
FriOI GRGCYC 1 cut(s) 25
Fsp4HI GCNGC 3 cut(s) 357, 535, 1008
FspBI CTAG 2 cut(s) 360, 1050
GluI GCNGC 3 cut(s) 357, 535, 1008
GsaI CCCAGC 1 cut(s) 130
HaeIII GGCC 2 cut(s) 632, 914
HapII CCGG 2 cut(s) 150, 1097
Hin1II CATG 7 cut(s) 56, 344, 494, 575, 619, 731, 785
HinfI GANTC 9 cut(s) 77, 196, 234, 259, 467, 685, 1046, 1079, 1100
HpaII CCGG 2 cut(s) 150, 1097
HphI GGTGA 1 cut(s) 81
Hpy166II GTNNAC 3 cut(s) 349, 388, 953
Hpy188III TCNNGA 5 cut(s) 29, 165, 341, 1076, 1115
Hpy8I GTNNAC 3 cut(s) 349, 388, 953
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 8 cut(s) 35, 38, 296, 373, 416, 539, 825, 859
HpyCH4III ACNGT 2 cut(s) 35, 1024
HpyCH4IV ACGT 4 cut(s) 117, 392, 742, 754
HpyCH4V TGCA 8 cut(s) 18, 56, 369, 461, 494, 738, 871, 1010
HpyF10VI GCNNNNNNNGC 4 cut(s) 522, 531, 868, 1013
HpyF3I CTNAG 2 cut(s) 159, 249
HpySE526I ACGT 4 cut(s) 117, 392, 742, 754
Hsp92II CATG 7 cut(s) 56, 344, 494, 575, 619, 731, 785
Kzo9I GATC 2 cut(s) 577, 1111
LpnPI CCDG 9 cut(s) 72, 140, 163, 355, 492, 646, 1026, 1110, 1128
Lsp1109I GCAGC 3 cut(s) 368, 521, 994
LweI GCATC 5 cut(s) 564, 725, 807, 994, 1083
MaeI CTAG 2 cut(s) 360, 1050
MaeII ACGT 4 cut(s) 117, 392, 742, 754
MaeIII GTNAC 4 cut(s) 113, 162, 275, 595
MalI GATC 2 cut(s) 579, 1113
MboI GATC 2 cut(s) 577, 1111
MboII GAAGA 6 cut(s) 235, 393, 599, 785, 836, 1097
MflI RGATCY 2 cut(s) 577, 1111
MhlI GDGCHC 2 cut(s) 25, 180
MlsI TGGCCA 1 cut(s) 632
MluNI TGGCCA 1 cut(s) 632
MlyI GAGTC 4 cut(s) 71, 205, 228, 1055
MmeI TCCRAC 2 cut(s) 21, 412
Mox20I TGGCCA 1 cut(s) 632
MroXI GAANNNNTTC 1 cut(s) 777
MscI TGGCCA 1 cut(s) 632
MseI TTAA 3 cut(s) 485, 521, 647
Msp20I TGGCCA 1 cut(s) 632
MspA1I CMGCKG 1 cut(s) 886
MspI CCGG 2 cut(s) 150, 1097
MvnI CGCG 2 cut(s) 185, 1077
MwoI GCNNNNNNNGC 4 cut(s) 522, 531, 868, 1013
NdeII GATC 2 cut(s) 577, 1111
NlaIII CATG 7 cut(s) 56, 344, 494, 575, 619, 731, 785
NlaIV GGNNCC 2 cut(s) 285, 1113
NmeAIII GCCGAG 1 cut(s) 75
NmuCI GTSAC 3 cut(s) 113, 162, 595
NruI TCGCGA 1 cut(s) 1077
NspI RCATGY 3 cut(s) 56, 494, 619
PaeI GCATGC 2 cut(s) 56, 494
PagI TCATGA 1 cut(s) 340
PaqCI CACCTGC 2 cut(s) 67, 1021
PciI ACATGT 1 cut(s) 615
PdmI GAANNNNTTC 1 cut(s) 777
PfeI GAWTC 5 cut(s) 259, 467, 685, 1079, 1100
PkrI GCNGC 3 cut(s) 358, 536, 1009
PleI GAGTC 4 cut(s) 71, 204, 228, 1054
PpsI GAGTC 4 cut(s) 71, 204, 228, 1054
PscI ACATGT 1 cut(s) 615
PshBI ATTAAT 1 cut(s) 647
PspFI CCCAGC 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 285, 1113
PspPI GGNCC 2 cut(s) 283, 912
PsuI RGATCY 2 cut(s) 577, 1111
PvuII CAGCTG 1 cut(s) 886
RruI TCGCGA 1 cut(s) 1077
RsaI GTAC 2 cut(s) 924, 960
RsaNI GTAC 2 cut(s) 923, 959
SaqAI TTAA 3 cut(s) 485, 521, 647
SatI GCNGC 3 cut(s) 357, 535, 1008
Sau3AI GATC 2 cut(s) 577, 1111
Sau96I GGNCC 2 cut(s) 283, 912
SchI GAGTC 4 cut(s) 71, 205, 228, 1055
SduI GDGCHC 2 cut(s) 25, 180
SfaNI GCATC 5 cut(s) 564, 725, 807, 994, 1083
SfcI CTRYAG 1 cut(s) 881
SinI GGWCC 1 cut(s) 283
SphI GCATGC 2 cut(s) 56, 494
SsiI CCGC 1 cut(s) 575
SspMI CTAG 2 cut(s) 360, 1050
StyI CCWWGG 2 cut(s) 915, 940
TaaI ACNGT 2 cut(s) 35, 1024
TaiI ACGT 4 cut(s) 120, 395, 745, 757
TaqI TCGA 3 cut(s) 28, 237, 976
TatI WGTACW 1 cut(s) 922
TfiI GAWTC 5 cut(s) 259, 467, 685, 1079, 1100
Tru1I TTAA 3 cut(s) 485, 521, 647
Tru9I TTAA 3 cut(s) 485, 521, 647
TscAI CASTG 2 cut(s) 460, 604
TseFI GTSAC 3 cut(s) 113, 162, 595
TseI GCWGC 3 cut(s) 356, 534, 1007
Tsp45I GTSAC 3 cut(s) 113, 162, 595
TspDTI ATGAA 5 cut(s) 357, 492, 716, 770, 807
TspGWI ACGGA 5 cut(s) 189, 271, 296, 718, 918
TspRI CASTG 2 cut(s) 460, 604
VpaK11BI GGWCC 1 cut(s) 283
VspI ATTAAT 1 cut(s) 647
XapI RAATTY 7 cut(s) 214, 546, 706, 722, 777, 963, 1027
XceI RCATGY 3 cut(s) 56, 494, 619
XmnI GAANNNNTTC 1 cut(s) 777
XspI CTAG 2 cut(s) 360, 1050
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.