Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005267

Physical Location & Seq

Genomic Coordinates Forward (+)

12234608 .. 12236681

Gene Structure 2074 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 774 bp

ATGCTGACATCGCCACTGAAGAATAAGCTAGAATTGAAAATGTCAAAGAAGATTGTGGTGGACAGGAAACCTACAACAGTCAAAGAGCTCTTTGACACTGGCTTGGTTGATGGGGTGCAAGTGATTTACATGGGCAGCAAGAAGGCATTCGGTCTGCGGGGCACAATAAAGGATGGTGGAATTTTGTGTTCATGCATACTGTGCAACGGCGGCAGTGTTATTCCACCGTCCCAATTTGAGATTCATGCTTGTAAAACATACAGACGAGCAGCACAGTATATTTGTTTTGAGAATGGAAGGAGCCTGCTTGATCTCTTGAAGTCGTGCAGAAATGCTTCTTTGCATACATTGGAAACAACAATTCAGAAGTTCATCAGTTCTTCACCCATGGAGAAGTATTTTACTTGTAAAAACTGTAGTGTGTCTTTTCCTCCATACTGTGCTCTGGGTGATGGATCTCTTTGCTATTCTTGCATGGAGCCGAAGCAGCCTGAGTGCAGCCTAACTCATGAGAGAGGCAATAGTCTCAGATCTTTGATACCTGTTTCAATCTCAAAGTCCTCCAAGAGTGCAATCTCAAAGTCCCGGAAAAGTGCAATCTCAAGGTCCCTGAAAAGTACAATCTCAAAGTCCTCGAAAAGTGCAATCTCAAAACCCTTGAGAAGTGCAATCTCAACTCCCCTGAAAAATGCAGTGTCAAAATCCCCCAAGAGTGCTCCACTCTATTGGTCACTGAAAAAGAAGACCCAGTTGAATACAAGAAAGTACCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000118 GO:0000122 GO:0000228 GO:0000785 GO:0000790 GO:0001085 GO:0001103 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005813 GO:0005815 GO:0005856 GO:0006355 GO:0006357 GO:0008134 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0015630 GO:0016043 GO:0016581 GO:0017053 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0042826 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044446 GO:0044451 GO:0044454 GO:0044464 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050808 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0060255 GO:0065007 GO:0070013 GO:0070491 GO:0070603 GO:0071840 GO:0072553 GO:0080090 GO:0090545 GO:0090568 GO:0099172 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1904949 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Jas PHD

Protein Analysis

258

Amino Acids

28.26

Weight (kDa)

9.86

Isoelectric Point (pI)

45.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TDBD	PF16135	54 - 109	5.4e-13	Tify domain binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005267)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36720 AT2G36720
fragaria_vesca	FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100 FvH4_6g17100
malus_domestica	MD00G1055800.v1.1 MD12G1104000.v1.1
prunus_persica	Prupe.7G123800_v2.0.a1
pyrus_communis	pycom04g08060 pycom12g10230 pycom12g10240 pycom12g10250
rosa_chinensis	RchiOBHm_Chr3g0471181
rosa_laevigata	RLG00000024200
rosa_multiflora	Rmu_sc0007633.1_g000026 Rmu_sc0010073.1_g000013
rosa_roxburghii	Rroxscaffold_6G00410250
rosa_rugosa	Rorug03G0115800
rosa_samantha	Rh3AG164800 Rh3BG190400 Rh3CG180700 Rh3DG185600
rosa_wichuraiana	Rw3G015550 Rw7G027560 Rw7G029700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	157, 210
AclWI	GGATC	1 cut(s)	463
AcsI	RAATTY	1 cut(s)	180
AcuI	CTGAAG	1 cut(s)	38
AfaI	GTAC	2 cut(s)	619, 767
AgsI	TTSAA	4 cut(s)	37, 319, 549, 754
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	2 cut(s)	28, 88
AluI	AGCT	2 cut(s)	28, 88
Alw21I	GWGCWC	3 cut(s)	90, 445, 718
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	463
ApeKI	GCWGC	4 cut(s)	135, 269, 487, 498
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	2 cut(s)	146, 334
AspS9I	GGNCC	1 cut(s)	606
AsuC2I	CCSGG	1 cut(s)	586
AsuHPI	GGTGA	2 cut(s)	375, 461
AvaII	GGWCC	1 cut(s)	606
BaeGI	GKGCMC	1 cut(s)	164
BanII	GRGCYC	1 cut(s)	90
BbsI	GAAGAC	1 cut(s)	749
Bbv12I	GWGCWC	3 cut(s)	90, 445, 718
BbvI	GCAGC	4 cut(s)	147, 281, 499, 510
BccI	CCATC	3 cut(s)	104, 167, 446
BceAI	ACGGC	1 cut(s)	223
BcnI	CCSGG	1 cut(s)	586
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	415
BglII	AGATCT	1 cut(s)	530
BisI	GCNGC	5 cut(s)	136, 211, 270, 488, 499
BlsI	GCNGC	5 cut(s)	137, 212, 271, 489, 500
Bme1390I	CCNGG	1 cut(s)	586
Bme18I	GGWCC	1 cut(s)	606
BmgT120I	GGNCC	1 cut(s)	606
BmiI	GGNNCC	3 cut(s)	302, 480, 608
BmrFI	CCNGG	1 cut(s)	586
BmrI	ACTGGG	1 cut(s)	742
BmuI	ACTGGG	1 cut(s)	742
BpiI	GAAGAC	1 cut(s)	749
BpuEI	CTTGAG	2 cut(s)	586, 679
BpuMI	CCSGG	1 cut(s)	586
BsaJI	CCNNGG	1 cut(s)	387
Bse1I	ACTGG	2 cut(s)	103, 748
BseDI	CCNNGG	1 cut(s)	387
BseGI	GGATG	1 cut(s)	178
BseMII	CTCAG	2 cut(s)	483, 541
BseNI	ACTGG	2 cut(s)	103, 748
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	147, 281, 499, 510
BsgI	GTGCAG	2 cut(s)	346, 517
BsiHKAI	GWGCWC	3 cut(s)	90, 445, 718
BsiSI	CCGG	1 cut(s)	586
BslFI	GGGAC	3 cut(s)	214, 568, 592
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	3 cut(s)	214, 568, 592
BsmI	GAATGC	1 cut(s)	146
Bsp1286I	GDGCHC	4 cut(s)	90, 164, 445, 718
Bsp143I	GATC	3 cut(s)	310, 455, 530
Bsp19I	CCATGG	1 cut(s)	387
BspACI	CCGC	2 cut(s)	157, 210
BspCNI	CTCAG	2 cut(s)	484, 540
BspHI	TCATGA	1 cut(s)	508
BspLI	GGNNCC	3 cut(s)	302, 480, 608
BspPI	GGATC	1 cut(s)	463
BsrI	ACTGG	2 cut(s)	103, 748
BssECI	CCNNGG	1 cut(s)	387
BssMI	GATC	3 cut(s)	310, 455, 530
BssT1I	CCWWGG	1 cut(s)	387
Bst4CI	ACNGT	6 cut(s)	79, 201, 228, 276, 416, 440
BstAPI	GCANNNNNTGC	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	305
BstDEI	CTNAG	2 cut(s)	492, 527
BstDSI	CCRYGG	1 cut(s)	387
BstF5I	GGATG	1 cut(s)	178
BstKTI	GATC	3 cut(s)	313, 458, 533
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	310, 455, 530
BstMWI	GCNNNNNNNGC	5 cut(s)	10, 201, 210, 471, 487
BstSCI	CCNGG	1 cut(s)	584
BstSFI	CTRYAG	1 cut(s)	415
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	4 cut(s)	147, 281, 499, 510
BstV2I	GAAGAC	1 cut(s)	749
BstX2I	RGATCY	2 cut(s)	455, 530
BstXI	CCANNNNNNTGG	1 cut(s)	726
BstYI	RGATCY	2 cut(s)	455, 530
BtgI	CCRYGG	1 cut(s)	387
BtsCI	GGATG	1 cut(s)	178
BtsI	GCAGTG	2 cut(s)	220, 699
BtsIMutI	CAGTG	5 cut(s)	14, 96, 220, 699, 731
Cac8I	GCNNGC	1 cut(s)	305
CciI	TCATGA	1 cut(s)	508
Cfr13I	GGNCC	1 cut(s)	606
Csp6I	GTAC	2 cut(s)	618, 766
CviAII	CATG	6 cut(s)	130, 192, 245, 388, 475, 509
CviJI	RGCY	7 cut(s)	28, 88, 102, 303, 481, 490, 501
CviKI_1	RGCY	7 cut(s)	28, 88, 102, 303, 481, 490, 501
CviQI	GTAC	2 cut(s)	618, 766
DdeI	CTNAG	2 cut(s)	492, 527
DpnI	GATC	3 cut(s)	312, 457, 532
DpnII	GATC	3 cut(s)	310, 455, 530
Ecl136II	GAGCTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	387
Eco24I	GRGCYC	1 cut(s)	90
Eco47I	GGWCC	1 cut(s)	606
Eco53kI	GAGCTC	1 cut(s)	88
Eco57I	CTGAAG	1 cut(s)	38
EcoICRI	GAGCTC	1 cut(s)	88
EcoO109I	RGGNCCY	1 cut(s)	606
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	197
EcoT38I	GRGCYC	1 cut(s)	90
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	6 cut(s)	133, 195, 248, 391, 478, 512
FaqI	GGGAC	3 cut(s)	214, 568, 592
FatI	CATG	6 cut(s)	129, 191, 244, 387, 474, 508
FauI	CCCGC	1 cut(s)	150
Fnu4HI	GCNGC	5 cut(s)	136, 211, 270, 488, 499
FokI	GGATG	1 cut(s)	185
FriOI	GRGCYC	1 cut(s)	90
Fsp4HI	GCNGC	5 cut(s)	136, 211, 270, 488, 499
FspBI	CTAG	1 cut(s)	29
GluI	GCNGC	5 cut(s)	136, 211, 270, 488, 499
HapII	CCGG	1 cut(s)	586
Hin1II	CATG	6 cut(s)	133, 195, 248, 391, 478, 512
HinfI	GANTC	1 cut(s)	241
HpaII	CCGG	1 cut(s)	586
HphI	GGTGA	2 cut(s)	375, 461
Hpy166II	GTNNAC	1 cut(s)	61
Hpy188I	TCNGA	2 cut(s)	366, 530
Hpy188III	TCNNGA	2 cut(s)	316, 509
Hpy8I	GTNNAC	1 cut(s)	61
HpyAV	CCTTC	2 cut(s)	136, 291
HpyCH4III	ACNGT	6 cut(s)	79, 201, 228, 276, 416, 440
HpyF10VI	GCNNNNNNNGC	5 cut(s)	10, 201, 210, 471, 487
HpyF3I	CTNAG	2 cut(s)	492, 527
Hsp92II	CATG	6 cut(s)	133, 195, 248, 391, 478, 512
Kzo9I	GATC	3 cut(s)	310, 455, 530
LmnI	GCTCC	3 cut(s)	300, 478, 721
Lsp1109I	GCAGC	4 cut(s)	147, 281, 499, 510
MaeI	CTAG	1 cut(s)	29
MaeIII	GTNAC	1 cut(s)	729
MalI	GATC	3 cut(s)	312, 457, 532
MboI	GATC	3 cut(s)	310, 455, 530
MboII	GAAGA	4 cut(s)	31, 61, 372, 754
MflI	RGATCY	2 cut(s)	455, 530
MhlI	GDGCHC	4 cut(s)	90, 164, 445, 718
MluCI	AATT	4 cut(s)	32, 180, 233, 360
MnlI	CCTC	4 cut(s)	441, 509, 571, 643
Mph1103I	ATGCAT	1 cut(s)	197
MroXI	GAANNNNTTC	2 cut(s)	146, 334
MspI	CCGG	1 cut(s)	586
MspR9I	CCNGG	1 cut(s)	586
Mva1269I	GAATGC	1 cut(s)	146
MwoI	GCNNNNNNNGC	5 cut(s)	10, 201, 210, 471, 487
NciI	CCSGG	1 cut(s)	586
NcoI	CCATGG	1 cut(s)	387
NdeII	GATC	3 cut(s)	310, 455, 530
NlaIII	CATG	6 cut(s)	133, 195, 248, 391, 478, 512
NlaIV	GGNNCC	3 cut(s)	302, 480, 608
NmuCI	GTSAC	1 cut(s)	729
NsiI	ATGCAT	1 cut(s)	197
PagI	TCATGA	1 cut(s)	508
PctI	GAATGC	1 cut(s)	146
PdmI	GAANNNNTTC	2 cut(s)	146, 334
PfeI	GAWTC	1 cut(s)	241
PfoI	TCCNGGA	1 cut(s)	584
PkrI	GCNGC	5 cut(s)	137, 212, 271, 489, 500
PpuMI	RGGWCCY	1 cut(s)	606
Psp124BI	GAGCTC	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	606
PspN4I	GGNNCC	3 cut(s)	302, 480, 608
PspPI	GGNCC	1 cut(s)	606
PspPPI	RGGWCCY	1 cut(s)	606
PsuI	RGATCY	2 cut(s)	455, 530
RsaI	GTAC	2 cut(s)	619, 767
RsaNI	GTAC	2 cut(s)	618, 766
SacI	GAGCTC	1 cut(s)	90
SatI	GCNGC	5 cut(s)	136, 211, 270, 488, 499
Sau3AI	GATC	3 cut(s)	310, 455, 530
Sau96I	GGNCC	1 cut(s)	606
ScrFI	CCNGG	1 cut(s)	586
SduI	GDGCHC	4 cut(s)	90, 164, 445, 718
SetI	ASST	5 cut(s)	30, 73, 90, 544, 608
SfcI	CTRYAG	1 cut(s)	415
SinI	GGWCC	1 cut(s)	606
SmlI	CTYRAG	2 cut(s)	601, 658
SmoI	CTYRAG	2 cut(s)	601, 658
Sse9I	AATT	4 cut(s)	32, 180, 233, 360
SsiI	CCGC	2 cut(s)	157, 210
SspMI	CTAG	1 cut(s)	29
SstI	GAGCTC	1 cut(s)	90
StyD4I	CCNGG	1 cut(s)	584
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	6 cut(s)	79, 201, 228, 276, 416, 440
TaqI	TCGA	1 cut(s)	635
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	4 cut(s)	32, 180, 233, 360
TatI	WGTACW	1 cut(s)	617
TauI	GCSGC	1 cut(s)	213
TfiI	GAWTC	1 cut(s)	241
TscAI	CASTG	5 cut(s)	21, 103, 220, 699, 738
TseFI	GTSAC	1 cut(s)	729
TseI	GCWGC	4 cut(s)	135, 269, 487, 498
Tsp45I	GTSAC	1 cut(s)	729
TspDTI	ATGAA	3 cut(s)	180, 233, 361
TspRI	CASTG	5 cut(s)	21, 103, 220, 699, 738
VpaK11BI	GGWCC	1 cut(s)	606
XapI	RAATTY	1 cut(s)	180
XmnI	GAANNNNTTC	2 cut(s)	146, 334
XspI	CTAG	1 cut(s)	29
Zsp2I	ATGCAT	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.