Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0011401

Physical Location & Seq

Genomic Coordinates Reverse (-)

14787399 .. 14791873

Gene Structure 4475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3315 bp

ATGGATATACTTCCATTGTTGACTCAGTTTGTAAACTCCGGTGCCAATTTATATATTTGCTATGGCTGCTTATCTGTTATCGACAAGTTAATTTATTTGAGCACATCAGACATGCTTGTAGAATTGCTTCAGAAGGCCAACATTTCAAGTTTTTTGGCTGGAGTGTTTACACGAAAGGATCCCCATGTGTTGATATTAGCTCTACATATTGCTGAGCTAATCCTGCAGAAACTTTCTGATTATTTCTTGGACTCTTTCATAAAAGAAGGCGTCTTTTTTGCCATTGATGCACTGTTAACACCTGATAAGTGTCAATTGGTAACCCTGGAAAAATGTTTGAGGTTGTTGTTCCCTGTGTTTAGTGGCTCACAGATTTTGTTGGATCCTCGTCAGAAGTCTACTTCAAGGGAGGTCCTGAGGTGCTTGTGTTATGCTTTTGCTACTGATAGATCACCATCGGTGTCAGAAAAAGGAAGTTGCATGCTTGAAAAGGATTCTGTTTATAATCTTGCAAAGCATATAAGGACCAAGTACTTTGCACAAGAATTGTATGACCCTGAGAAAGCATTAACTGATGTCCTTCAGAAGCTTAGAAAATTTTCTTCTGCAATAAGTGATTTGAACACGTCCACGAATAATGATGCTCTTGATCAGCATGAAGAAAGGTTCTATAGTATCATGCGTCAAGTAATGGAAAAGCTTGGTGGACGAGAACCCATTTCCACTTTTGAATTTATCGAATCTGGAATTCTAAGGTCCTTAATGACTTATCTGTCCAATGGCCAGTACTTGAAACAAAAGGGGGAACTTAGTGCTGGTAACAGTGATATTTATTCTGTAGAAAAAAGATTTGAGGTGTTTGCAAGGCTATTATTTTCTCCTTTAGACATGATCACTGTGGACCTACCTATGATAACATTAATACGCAAACTGCAAAATGCGCTATCTTCTTTGGAAAATTTCCCTGTTATTTTGAGCAATGTGCCCAAGCTAAGAAGTTCATATGCTACACTTCCATATGGGCGTCGCACAACATATCCATGTATTAAAGTTCGTTTTGTGAAAGACAAAGGGGACACGCGTCTTTGTGATTACCGTGAAGGTGTTCTGACTGTAGATCCTTTTTCCTCATTGCATGCCATTGAAGAAGTTCTGTGGCCTAAAGTCAAAGCAAAAAGAACCAGCCACATTAAATCACCTACACAAGTTAAGGACCAATCTGAAAGTCTACCGGATCAATCACCATCAAATGCAAGCTCTAGTCAAGGGGGAAGTCCACATCCTATGGAGCCTGAAAGCATGTCGACGGACTTGCCTGAGTTGCAGGAACCTGTGGAAAAAGAAGCACAATGTGCCTCAGAGGAAGACATTGAGATGGAAGAACAGTATCCAGTATCTTGTAGCAAAGAAGATTCTTCTTCAAAACTGTTATTTTATCTTGAAGGGCAACAGCTGGAGCCGTCATTGACATTGTACCAAGCAATTCTGCAACAACAAATGAACGAACATGAAATTGTCATTGGTTCAAAACTTTGGAGTCAAGAATACACATTAACATACAGAAAGGCTGAAGGTCAATATGGTACACATAAAGAATGTCTTTGTTCAGCAGAAAGTTCTGCTCAGAAAGTTGACGTACATGAGTTGTATACTTCATTTTTCTCCAGCTCGTTTGCTTATGATCTTGCTTCTGACTTGGAGAAGTCAAGTCCTGTTTATGATATAATATACATCCTCAAAAGCTTGGAAAGGATGAATAAGGTTATATTTCATCTGATGTCTCGTGAAAGAATATGTGCTTTTGCTAAAGGGAAAATCGATGACTTGGATAATTTTCAGACAGCAGTTATTCCAGTGCCTCAGAATGAGTTCGTGAGCAGTAAATTGACAGAAAAATTGGAACAACAGATGCGGGATGCTTTAGCAGTGTCCATTGGTGGTATGCCTTTGTGGTGTAATCAGTTAATGGAATCGTGTCCCTTTTTATTTAGTTTTGAGGTCAAATGTAAGTACTTCCGTTTGGCAGCATTTGGCCCACTGCTAGGTCAGCCTCATTCACCATCTTATAGGGATTCAGGGGTGACCAGTGACAGGAGACTAAGCTCCGGAAGCATGCCTCGAAAAAAGTTTTTGGTTTTCCGCAACCAAATTCTGGATTCTGCTGCCCAAATGATGGACCTGCATGCCAGGCAGAAGGTGCTCCTTGAGGTGGAATACAATGAAGAAGTTGGTACTGGTCTTGGTCCAACCTTGGAATTCTACACCTTGGTGAGTCACGAGTTTCAGAAGTCTGGTCTAGGCATGTGGAGAGAGGATCGTGGGTCTTTTACCACTGGTACAAGCCATGCTGGGGACAGTGGAATTTTGATATGTCCTTTTGGTCTTTTCCCTCGTCCATGGTTGGGTACATCTGATGAGATACAGATACAGTTCAGTGAAGTAATTAAGAAGTTTGTCCTTTTGGGGCAAATCGTAGGAAAAGCGCTCCAAGATGGGCGTGTCTTGGATGTGCATTTCTCCACAGCCTTCTATAAACTTATTCTTGGCAAGGAACTTGGTGTGTATGACATCCTGTCATTTGATCCTGAGCTTGGCAAGACACTGCTAGAGTTTAAGGCTCTTGTAGACAGGAAAAAATTTTCGGAATCCATTCATGGAGAAAGTACAACATTGAAATTTGACTTGTGCTTTCGGAAAACCCATATTGAGGATCTTTGTCTTGATTTCACACTTCCTGGCTATCCTGATTTTATTCTGTCGTCTAGGCCTGATCATAAAATGGTAAATATTACAAATTTGGAAGATTATGTTTCACTAGTGGCGGATGCAACTGTAACTGCTGGAATTTCTAGACAAGTGGAAGCTTTCAAATCTGGCTTTAACCAGGTTTTCCCTATTGAGCATCTTCAGATTTTCACCGAAGAAGAATTAGAGCGTTTATTATGTGGAGAACGTGATTCTTGGGCTTTCAATGAGCTCCTTGATCATATCAAATTCGACCATGGTTACACAGTTAGCAGTCCTCCCATTATCAATTTGCTGGAAATCATAGACAAGTTCGACCAAGAACAGCGAAGAGCGTTTTTGCAATTTGTGACTGGGGCACCTCGCTTACCTCCTGGAGGTTTTGCATCTCTCAGTCCGAAGTTAACTATTGTTCGAAAGCAATCTAGCAACTGCGCAGACTTAGACCTACCAAGCGTGATGACTTGTGCAAATTATCTTAAGCTGCCGCCTTACTCTTCACAAGAGACGATGAAAGAGAAGCTGTTATATGCCATTACAGAAGGGCAGGGATCATTCCACCTTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0032446 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

HECT

Protein Analysis

1105

Amino Acids

124.82

Weight (kDa)

5.5

Isoelectric Point (pI)

50.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HECT	PF00632	756 - 1104	5.2e-80	HECT-domain (ubiquitin-transferase)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011401)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02880 AT5G02880
fragaria_vesca	FvH4_6g15270 FvH4_6g15270 FvH4_6g15270 FvH4_6g15270
malus_domestica	MD04G1104600.v1.1 MD12G1124500.v1.1
prunus_persica	Prupe.6G241700_v2.0.a1 Prupe.6G241700_v2.0.a1
pyrus_communis	pycom12g12310
rosa_chinensis	RchiOBHm_Chr3g0468671
rosa_laevigata	RLG00000024416
rosa_multiflora	Rmu_sc0011538.1_g000007
rosa_roxburghii	Rroxscaffold_6G00412660
rosa_rugosa	Rorug03G0096200
rosa_samantha	Rh3AG145000 Rh3BG167500 Rh3DG166300
rosa_wichuraiana	Rw3G013670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	504
AasI	GACNNNNNNGTC	1 cut(s)	772
Acc16I	TGCGCA	1 cut(s)	3181
Acc36I	ACCTGC	1 cut(s)	2187
AccB1I	GGYRCC	2 cut(s)	41, 3103
AccB7I	CCANNNNNTGG	2 cut(s)	2152, 2173
AccI	GTMKAC	5 cut(s)	398, 1228, 1304, 1649, 2625
AccII	CGCG	1 cut(s)	1081
AccIII	TCCGGA	1 cut(s)	2105
AciI	CCGC	4 cut(s)	1912, 2140, 2822, 3233
AcoI	YGGCCR	1 cut(s)	781
AcuI	CTGAAG	4 cut(s)	113, 566, 1590, 2891
AcyI	GRCGYC	2 cut(s)	270, 1024
AdeI	CACNNNGTG	1 cut(s)	1352
AfeI	AGCGCT	1 cut(s)	2484
AflII	CTTAAG	1 cut(s)	3224
AflIII	ACRYGT	2 cut(s)	624, 1079
AhdI	GACNNNNNGTC	1 cut(s)	2572
AhlI	ACTAGT	1 cut(s)	2815
AjiI	CACGTC	1 cut(s)	627
AjnI	CCWGG	5 cut(s)	324, 2186, 2734, 2883, 3118
AjuI	GAANNNNNNNTTGG	2 cut(s)	1503, 1535
AleI	CACNNNNGTG	1 cut(s)	2267
Alw21I	GWGCWC	3 cut(s)	104, 2202, 2979
Alw26I	GTCTC	3 cut(s)	1785, 2089, 3245
Aor13HI	TCCGGA	1 cut(s)	2105
Aor51HI	AGCGCT	1 cut(s)	2484
AoxI	GGCC	5 cut(s)	135, 781, 1157, 2032, 2765
ApeKI	GCWGC	4 cut(s)	66, 2024, 2162, 3229
AseI	ATTAAT	1 cut(s)	920
Asp700I	GAANNNNTTC	6 cut(s)	126, 598, 1104, 1149, 1868, 2649
AspLEI	GCGC	3 cut(s)	943, 2485, 3182
AspS9I	GGNCC	8 cut(s)	412, 525, 756, 901, 1213, 2033, 2176, 2243
AsuHPI	GGTGA	7 cut(s)	444, 1188, 1233, 2049, 2092, 2281, 2908
AsuII	TTCGAA	1 cut(s)	3160
AvaII	GGWCC	7 cut(s)	412, 525, 756, 901, 1213, 2176, 2243
AxyI	CCTNAGG	1 cut(s)	416
BaeGI	GKGCMC	2 cut(s)	987, 3106
BalI	TGGCCA	1 cut(s)	783
BamHI	GGATCC	2 cut(s)	178, 382
BanI	GGYRCC	2 cut(s)	41, 3103
BanII	GRGCYC	1 cut(s)	2979
BarI	GAAGNNNNNNTAC	2 cut(s)	111, 143
BauI	CACGAG	2 cut(s)	1782, 2276
BbsI	GAAGAC	1 cut(s)	1371
Bbv12I	GWGCWC	3 cut(s)	104, 2202, 2979
BbvI	GCAGC	4 cut(s)	53, 2036, 2149, 3216
BccI	CCATC	6 cut(s)	463, 1252, 1369, 2068, 2167, 2486
BceAI	ACGGC	1 cut(s)	1444
BcgI	CGANNNNNNTGC	2 cut(s)	1294, 1328
BciT130I	CCWGG	5 cut(s)	326, 2188, 2736, 2885, 3120
BciVI	GTATCC	1 cut(s)	1398
BclI	TGATCA	4 cut(s)	649, 891, 2770, 2983
BcoDI	GTCTC	3 cut(s)	1785, 2089, 3245
BcuI	ACTAGT	1 cut(s)	2815
BfaI	CTAG	8 cut(s)	1260, 2042, 2297, 2606, 2763, 2816, 2850, 3171
BfmI	CTRYAG	4 cut(s)	224, 670, 837, 1113
BfoI	RGCGCY	1 cut(s)	2486
BfrI	CTTAAG	1 cut(s)	3224
BfuAI	ACCTGC	1 cut(s)	2187
BfuI	GTATCC	1 cut(s)	1398
BisI	GCNGC	5 cut(s)	67, 2025, 2163, 3230, 3233
BlpI	GCTNAGC	1 cut(s)	213
BlsI	GCNGC	5 cut(s)	68, 2026, 2164, 3231, 3234
BmcAI	AGTACT	3 cut(s)	533, 788, 2012
Bme1390I	CCNGG	5 cut(s)	326, 2188, 2736, 2885, 3120
Bme18I	GGWCC	7 cut(s)	412, 525, 756, 901, 1213, 2176, 2243
BmeRI	GACNNNNNGTC	1 cut(s)	2572
BmgBI	CACGTC	1 cut(s)	627
BmgT120I	GGNCC	8 cut(s)	412, 525, 756, 901, 1213, 2033, 2176, 2243
BmiI	GGNNCC	7 cut(s)	43, 180, 384, 1290, 1329, 1458, 3105
BmrFI	CCNGG	5 cut(s)	326, 2188, 2736, 2885, 3120
BmrI	ACTGGG	1 cut(s)	3108
BmsI	GCATC	7 cut(s)	277, 631, 1899, 1906, 2815, 2911, 3140
BmuI	ACTGGG	1 cut(s)	3108
BoxI	GACNNNNGTC	1 cut(s)	1080
BpiI	GAAGAC	1 cut(s)	1371
BpmI	CTGGAG	4 cut(s)	180, 1475, 1648, 3141
Bpu10I	CCTNAGC	1 cut(s)	2586
Bpu1102I	GCTNAGC	1 cut(s)	213
Bpu14I	TTCGAA	1 cut(s)	3160
BpuEI	CTTGAG	1 cut(s)	2225
Bsa29I	ATCGAT	1 cut(s)	1818
BsaBI	GATNNNNATC	1 cut(s)	454
BsaHI	GRCGYC	2 cut(s)	270, 1024
BsaJI	CCNNGG	5 cut(s)	324, 2250, 2265, 2396, 3001
BsaWI	WCCGGW	3 cut(s)	38, 1231, 2105
Bse1I	ACTGG	7 cut(s)	784, 1391, 1853, 2085, 2239, 2338, 3103
Bse21I	CCTNAGG	1 cut(s)	416
Bse3DI	GCAATG	2 cut(s)	985, 1130
Bse8I	GATNNNNATC	1 cut(s)	454
BseAI	TCCGGA	1 cut(s)	2105
BseBI	CCWGG	5 cut(s)	326, 2188, 2736, 2885, 3120
BseCI	ATCGAT	1 cut(s)	1818
BseDI	CCNNGG	5 cut(s)	324, 2250, 2265, 2396, 3001
BseGI	GGATG	7 cut(s)	1279, 1731, 1758, 1921, 2512, 2568, 2830
BseJI	GATNNNNATC	1 cut(s)	454
BseMI	GCAATG	2 cut(s)	985, 1130
BseNI	ACTGG	7 cut(s)	784, 1391, 1853, 2085, 2239, 2338, 3103
BseSI	GKGCMC	2 cut(s)	987, 3106
BseXI	GCAGC	4 cut(s)	53, 2036, 2149, 3216
BseYI	CCCAGC	1 cut(s)	2348
Bsh1236I	CGCG	1 cut(s)	1081
BshFI	GGCC	5 cut(s)	137, 783, 1159, 2034, 2767
BshNI	GGYRCC	2 cut(s)	41, 3103
BshVI	ATCGAT	1 cut(s)	1818
BsiHKAI	GWGCWC	3 cut(s)	104, 2202, 2979
BsiSI	CCGG	3 cut(s)	39, 1232, 2106
BslFI	GGGAC	3 cut(s)	1088, 1962, 2366
BsmAI	GTCTC	3 cut(s)	1785, 2089, 3245
BsmBI	CGTCTC	1 cut(s)	3245
BsmFI	GGGAC	3 cut(s)	1088, 1962, 2366
BsnI	GGCC	5 cut(s)	137, 783, 1159, 2034, 2767
Bsp119I	TTCGAA	1 cut(s)	3160
Bsp1286I	GDGCHC	5 cut(s)	104, 987, 2202, 2979, 3106
Bsp13I	TCCGGA	1 cut(s)	2105
Bsp1720I	GCTNAGC	1 cut(s)	213
Bsp19I	CCATGG	2 cut(s)	2396, 3001
BspACI	CCGC	4 cut(s)	1912, 2140, 2822, 3233
BspANI	GGCC	5 cut(s)	137, 783, 1159, 2034, 2767
BspDI	ATCGAT	1 cut(s)	1818
BspEI	TCCGGA	1 cut(s)	2105
BspFNI	CGCG	1 cut(s)	1081
BspLI	GGNNCC	7 cut(s)	43, 180, 384, 1290, 1329, 1458, 3105
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	1 cut(s)	2187
BspQI	GCTCTTC	1 cut(s)	3070
BspT104I	TTCGAA	1 cut(s)	3160
BspT107I	GGYRCC	2 cut(s)	41, 3103
BspTI	CTTAAG	1 cut(s)	3224
BsrDI	GCAATG	2 cut(s)	985, 1130
BsrI	ACTGG	7 cut(s)	784, 1391, 1853, 2085, 2239, 2338, 3103
BssECI	CCNNGG	5 cut(s)	324, 2250, 2265, 2396, 3001
BssNAI	GTATAC	1 cut(s)	1650
BssNI	GRCGYC	2 cut(s)	270, 1024
BssSI	CACGAG	2 cut(s)	1782, 2276
BssT1I	CCWWGG	4 cut(s)	2250, 2265, 2396, 3001
Bst1107I	GTATAC	1 cut(s)	1650
Bst2BI	CACGAG	2 cut(s)	1782, 2276
Bst2UI	CCWGG	5 cut(s)	326, 2188, 2736, 2885, 3120
Bst6I	CTCTTC	2 cut(s)	3070, 3247
BstACI	GRCGYC	2 cut(s)	270, 1024
BstAFI	CTTAAG	1 cut(s)	3224
BstAPI	GCANNNNNTGC	2 cut(s)	1352, 2197
BstBI	TTCGAA	1 cut(s)	3160
BstC8I	GCNNGC	5 cut(s)	482, 1137, 1255, 2114, 2184
BstDSI	CCRYGG	2 cut(s)	2396, 3001
BstEII	GGTNACC	2 cut(s)	319, 2080
BstENI	CCTNNNNNAGG	1 cut(s)	3120
BstF5I	GGATG	7 cut(s)	1279, 1731, 1758, 1921, 2512, 2568, 2830
BstFNI	CGCG	1 cut(s)	1081
BstH2I	RGCGCY	1 cut(s)	2486
BstHHI	GCGC	3 cut(s)	943, 2485, 3182
BstMAI	GTCTC	3 cut(s)	1785, 2089, 3245
BstNI	CCWGG	5 cut(s)	326, 2188, 2736, 2885, 3120
BstNSI	RCATGY	7 cut(s)	115, 484, 1139, 1303, 2116, 2186, 2305
BstPAI	GACNNNNGTC	1 cut(s)	1080
BstPI	GGTNACC	2 cut(s)	319, 2080
BstSCI	CCNGG	5 cut(s)	324, 2186, 2734, 2883, 3118
BstSFI	CTRYAG	4 cut(s)	224, 670, 837, 1113
BstSLI	GKGCMC	2 cut(s)	987, 3106
BstUI	CGCG	1 cut(s)	1081
BstV1I	GCAGC	4 cut(s)	53, 2036, 2149, 3216
BstV2I	GAAGAC	1 cut(s)	1371
BstX2I	RGATCY	4 cut(s)	178, 382, 1117, 2710
BstYI	RGATCY	4 cut(s)	178, 382, 1117, 2710
BstZ17I	GTATAC	1 cut(s)	1650
Bsu15I	ATCGAT	1 cut(s)	1818
Bsu36I	CCTNAGG	1 cut(s)	416
BsuI	GTATCC	1 cut(s)	1398
BsuRI	GGCC	5 cut(s)	137, 783, 1159, 2034, 2767
BsuTUI	ATCGAT	1 cut(s)	1818
BtgI	CCRYGG	2 cut(s)	2396, 3001
BtrI	CACGTC	1 cut(s)	627
BtsCI	GGATG	7 cut(s)	1279, 1731, 1758, 1921, 2512, 2568, 2830
BtsI	GCAGTG	3 cut(s)	1932, 2036, 2600
BveI	ACCTGC	1 cut(s)	2187
Cac8I	GCNNGC	5 cut(s)	482, 1137, 1255, 2114, 2184
CfoI	GCGC	3 cut(s)	943, 2485, 3182
Cfr13I	GGNCC	8 cut(s)	412, 525, 756, 901, 1213, 2033, 2176, 2243
ClaI	ATCGAT	1 cut(s)	1818
CseI	GACGC	4 cut(s)	259, 671, 1013, 1070
CsiI	ACCWGGT	1 cut(s)	2883
DraIII	CACNNNGTG	1 cut(s)	1352
DrdI	GACNNNNNNGTC	1 cut(s)	772
DriI	GACNNNNNGTC	1 cut(s)	2572
DseDI	GACNNNNNNGTC	1 cut(s)	772
EaeI	YGGCCR	1 cut(s)	781
Eam1104I	CTCTTC	2 cut(s)	3070, 3247
Eam1105I	GACNNNNNGTC	1 cut(s)	2572
EarI	CTCTTC	2 cut(s)	3070, 3247
EciI	GGCGGA	1 cut(s)	2837
Ecl136II	GAGCTC	1 cut(s)	2977
Eco130I	CCWWGG	4 cut(s)	2250, 2265, 2396, 3001
Eco147I	AGGCCT	1 cut(s)	2767
Eco24I	GRGCYC	1 cut(s)	2979
Eco47I	GGWCC	7 cut(s)	412, 525, 756, 901, 1213, 2176, 2243
Eco47III	AGCGCT	1 cut(s)	2484
Eco53kI	GAGCTC	1 cut(s)	2977
Eco57I	CTGAAG	4 cut(s)	113, 566, 1590, 2891
Eco81I	CCTNAGG	1 cut(s)	416
Eco91I	GGTNACC	2 cut(s)	319, 2080
EcoICRI	GAGCTC	1 cut(s)	2977
EcoNI	CCTNNNNNAGG	1 cut(s)	3120
EcoO109I	RGGNCCY	2 cut(s)	412, 756
EcoO65I	GGTNACC	2 cut(s)	319, 2080
EcoRI	GAATTC	2 cut(s)	747, 2255
EcoRII	CCWGG	5 cut(s)	324, 2186, 2734, 2883, 3118
EcoT14I	CCWWGG	4 cut(s)	2250, 2265, 2396, 3001
EcoT38I	GRGCYC	1 cut(s)	2979
ErhI	CCWWGG	4 cut(s)	2250, 2265, 2396, 3001
Esp3I	CGTCTC	1 cut(s)	3245
FalI	AAGNNNNNCTT	2 cut(s)	1584, 1616
FaqI	GGGAC	3 cut(s)	1088, 1962, 2366
FauI	CCCGC	1 cut(s)	1905
FauNDI	CATATG	2 cut(s)	1003, 1018
FbaI	TGATCA	4 cut(s)	649, 891, 2770, 2983
FblI	GTMKAC	5 cut(s)	398, 1228, 1304, 1649, 2625
Fnu4HI	GCNGC	5 cut(s)	67, 2025, 2163, 3230, 3233
FokI	GGATG	7 cut(s)	1266, 1718, 1765, 1928, 2519, 2555, 2837
FriOI	GRGCYC	1 cut(s)	2979
Fsp4HI	GCNGC	5 cut(s)	67, 2025, 2163, 3230, 3233
FspBI	CTAG	8 cut(s)	1260, 2042, 2297, 2606, 2763, 2816, 2850, 3171
FspI	TGCGCA	1 cut(s)	3181
GlaI	GCGC	3 cut(s)	942, 2484, 3181
GluI	GCNGC	5 cut(s)	67, 2025, 2163, 3230, 3233
GsaI	CCCAGC	1 cut(s)	2352
GsuI	CTGGAG	4 cut(s)	180, 1475, 1648, 3141
HaeII	RGCGCY	1 cut(s)	2486
HaeIII	GGCC	5 cut(s)	137, 783, 1159, 2034, 2767
HapII	CCGG	3 cut(s)	39, 1232, 2106
HgaI	GACGC	4 cut(s)	259, 671, 1013, 1070
HhaI	GCGC	3 cut(s)	943, 2485, 3182
Hin1I	GRCGYC	2 cut(s)	270, 1024
Hin6I	GCGC	3 cut(s)	941, 2483, 3180
HinP1I	GCGC	3 cut(s)	941, 2483, 3180
HincII	GTYRAC	5 cut(s)	21, 297, 1305, 1633, 3150
HindII	GTYRAC	5 cut(s)	21, 297, 1305, 1633, 3150
HindIII	AAGCTT	4 cut(s)	587, 698, 1741, 2862
HpaI	GTTAAC	2 cut(s)	297, 3150
HpaII	CCGG	3 cut(s)	39, 1232, 2106
HphI	GGTGA	7 cut(s)	444, 1188, 1233, 2049, 2092, 2281, 2908
Hpy99I	CGWCG	2 cut(s)	1029, 1309
HpyAV	CCTTC	9 cut(s)	127, 260, 590, 1094, 1436, 1565, 2188, 2536, 3281
HpyCH4IV	ACGT	3 cut(s)	626, 1635, 2953
HpySE526I	ACGT	3 cut(s)	626, 1635, 2953
Hsp92I	GRCGYC	2 cut(s)	270, 1024
HspAI	GCGC	3 cut(s)	941, 2483, 3180
Kpn2I	TCCGGA	1 cut(s)	2105
Ksp22I	TGATCA	4 cut(s)	649, 891, 2770, 2983
KspAI	GTTAAC	2 cut(s)	297, 3150
LguI	GCTCTTC	1 cut(s)	3070
LmnI	GCTCC	6 cut(s)	1288, 1456, 2108, 2205, 2490, 2982
Lsp1109I	GCAGC	4 cut(s)	53, 2036, 2149, 3216
LweI	GCATC	7 cut(s)	277, 631, 1899, 1906, 2815, 2911, 3140
MabI	ACCWGGT	1 cut(s)	2883
MaeI	CTAG	8 cut(s)	1260, 2042, 2297, 2606, 2763, 2816, 2850, 3171
MaeII	ACGT	3 cut(s)	626, 1635, 2953
MaeIII	GTNAC	8 cut(s)	319, 818, 2080, 2087, 2273, 2833, 3005, 3094
MfeI	CAATTG	1 cut(s)	314
MflI	RGATCY	4 cut(s)	178, 382, 1117, 2710
MhlI	GDGCHC	5 cut(s)	104, 987, 2202, 2979, 3106
MlsI	TGGCCA	1 cut(s)	783
MluI	ACGCGT	1 cut(s)	1079
MluNI	TGGCCA	1 cut(s)	783
MlyI	GAGTC	4 cut(s)	16, 245, 1546, 2281
MmeI	TCCRAC	2 cut(s)	360, 2270
Mox20I	TGGCCA	1 cut(s)	783
MroI	TCCGGA	1 cut(s)	2105
MroXI	GAANNNNTTC	6 cut(s)	126, 598, 1104, 1149, 1868, 2649
MscI	TGGCCA	1 cut(s)	783
MslI	CAYNNNNRTG	3 cut(s)	1039, 1373, 2267
Msp20I	TGGCCA	1 cut(s)	783
MspA1I	CMGCKG	1 cut(s)	1453
MspCI	CTTAAG	1 cut(s)	3224
MspI	CCGG	3 cut(s)	39, 1232, 2106
MspR9I	CCNGG	5 cut(s)	326, 2188, 2736, 2885, 3120
MunI	CAATTG	1 cut(s)	314
MvaI	CCWGG	5 cut(s)	326, 2188, 2736, 2885, 3120
MvnI	CGCG	1 cut(s)	1081
NcoI	CCATGG	2 cut(s)	2396, 3001
NdeI	CATATG	2 cut(s)	1003, 1018
NlaIV	GGNNCC	7 cut(s)	43, 180, 384, 1290, 1329, 1458, 3105
NmuCI	GTSAC	4 cut(s)	2080, 2087, 2273, 3094
NsbI	TGCGCA	1 cut(s)	3181
NspI	RCATGY	7 cut(s)	115, 484, 1139, 1303, 2116, 2186, 2305
NspV	TTCGAA	1 cut(s)	3160
OliI	CACNNNNGTG	1 cut(s)	2267
PaeI	GCATGC	4 cut(s)	484, 1139, 2116, 2186
PceI	AGGCCT	1 cut(s)	2767
PciSI	GCTCTTC	1 cut(s)	3070
PdmI	GAANNNNTTC	6 cut(s)	126, 598, 1104, 1149, 1868, 2649
PfeI	GAWTC	8 cut(s)	494, 740, 1412, 1970, 2072, 2156, 2645, 2957
PflMI	CCANNNNNTGG	2 cut(s)	2152, 2173
PfoI	TCCNGGA	1 cut(s)	3118
PkrI	GCNGC	5 cut(s)	68, 2026, 2164, 3231, 3234
PleI	GAGTC	4 cut(s)	16, 245, 1545, 2280
PpsI	GAGTC	4 cut(s)	16, 245, 1545, 2280
PpuMI	RGGWCCY	2 cut(s)	412, 756
PshAI	GACNNNNGTC	1 cut(s)	1080
PshBI	ATTAAT	1 cut(s)	920
PsiI	TTATAA	1 cut(s)	504
Psp124BI	GAGCTC	1 cut(s)	2979
Psp5II	RGGWCCY	2 cut(s)	412, 756
Psp6I	CCWGG	5 cut(s)	324, 2186, 2734, 2883, 3118
PspEI	GGTNACC	2 cut(s)	319, 2080
PspFI	CCCAGC	1 cut(s)	2348
PspGI	CCWGG	5 cut(s)	324, 2186, 2734, 2883, 3118
PspN4I	GGNNCC	7 cut(s)	43, 180, 384, 1290, 1329, 1458, 3105
PspPI	GGNCC	8 cut(s)	412, 525, 756, 901, 1213, 2033, 2176, 2243
PspPPI	RGGWCCY	2 cut(s)	412, 756
PstI	CTGCAG	1 cut(s)	228
PsuI	RGATCY	4 cut(s)	178, 382, 1117, 2710
PvuII	CAGCTG	1 cut(s)	1453
RseI	CAYNNNNRTG	3 cut(s)	1039, 1373, 2267
SacI	GAGCTC	1 cut(s)	2979
SalI	GTCGAC	1 cut(s)	1303
SapI	GCTCTTC	1 cut(s)	3070
SatI	GCNGC	5 cut(s)	67, 2025, 2163, 3230, 3233
Sau96I	GGNCC	8 cut(s)	412, 525, 756, 901, 1213, 2033, 2176, 2243
ScaI	AGTACT	3 cut(s)	533, 788, 2012
SchI	GAGTC	4 cut(s)	16, 245, 1546, 2281
ScrFI	CCNGG	5 cut(s)	326, 2188, 2736, 2885, 3120
SduI	GDGCHC	5 cut(s)	104, 987, 2202, 2979, 3106
SexAI	ACCWGGT	1 cut(s)	2883
SfaNI	GCATC	7 cut(s)	277, 631, 1899, 1906, 2815, 2911, 3140
SfcI	CTRYAG	4 cut(s)	224, 670, 837, 1113
SfuI	TTCGAA	1 cut(s)	3160
SinI	GGWCC	7 cut(s)	412, 525, 756, 901, 1213, 2176, 2243
SmiMI	CAYNNNNRTG	3 cut(s)	1039, 1373, 2267
SmlI	CTYRAG	2 cut(s)	2204, 3224
SmoI	CTYRAG	2 cut(s)	2204, 3224
SpeI	ACTAGT	1 cut(s)	2815
SphI	GCATGC	4 cut(s)	484, 1139, 2116, 2186
SseBI	AGGCCT	1 cut(s)	2767
SsiI	CCGC	4 cut(s)	1912, 2140, 2822, 3233
SspI	AATATT	1 cut(s)	2788
SspMI	CTAG	8 cut(s)	1260, 2042, 2297, 2606, 2763, 2816, 2850, 3171
SstI	GAGCTC	1 cut(s)	2979
StuI	AGGCCT	1 cut(s)	2767
StyD4I	CCNGG	5 cut(s)	324, 2186, 2734, 2883, 3118
StyI	CCWWGG	4 cut(s)	2250, 2265, 2396, 3001
TaiI	ACGT	3 cut(s)	629, 1638, 2956
TaqI	TCGA	8 cut(s)	81, 738, 1304, 1818, 2119, 2997, 3060, 3160
TatI	WGTACW	4 cut(s)	531, 786, 2010, 2663
TauI	GCSGC	1 cut(s)	3235
TfiI	GAWTC	8 cut(s)	494, 740, 1412, 1970, 2072, 2156, 2645, 2957
TseFI	GTSAC	4 cut(s)	2080, 2087, 2273, 3094
TseI	GCWGC	4 cut(s)	66, 2024, 2162, 3229
Tsp45I	GTSAC	4 cut(s)	2080, 2087, 2273, 3094
TspGWI	ACGGA	2 cut(s)	1322, 2006
Van91I	CCANNNNNTGG	2 cut(s)	2152, 2173
Vha464I	CTTAAG	1 cut(s)	3224
VpaK11BI	GGWCC	7 cut(s)	412, 525, 756, 901, 1213, 2176, 2243
VspI	ATTAAT	1 cut(s)	920
XagI	CCTNNNNNAGG	1 cut(s)	3120
XbaI	TCTAGA	1 cut(s)	2849
XceI	RCATGY	7 cut(s)	115, 484, 1139, 1303, 2116, 2186, 2305
XmiI	GTMKAC	5 cut(s)	398, 1228, 1304, 1649, 2625
XmnI	GAANNNNTTC	6 cut(s)	126, 598, 1104, 1149, 1868, 2649
XspI	CTAG	8 cut(s)	1260, 2042, 2297, 2606, 2763, 2816, 2850, 3171
ZrmI	AGTACT	3 cut(s)	533, 788, 2012

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.