pycom12g12600

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
15066338 .. 15067455
1118 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
ATGACAGCAACTACTGGCATGGAAGATGGAAAATGCAGTGACAAGATGGAAGGAGATGGTAGTTTGAGGACTTTGGAGTGCCTCAGAGGGAGACTGCTGGCGGAGAGGCAAGCTTCAAGGGTTGCAAAAGAGGATGCAGAACTCATTGGCAAGAAGTTAGTAGAACTACAGAAGCAGCTCAAAGAAGAGATCAAACTAAAGGAAAAGGCGGAAAAGAAGCTCAAATATTTGAAGAAAAAGCTTGAATCTTTGAATAATTCCTCCAAAAATAGTGAAAAATCTTGTACACAATCCACTACTACTTCATCAGGATCCAATCATCCAGAAACCCATGAAGCCAAATCCAAAGTTGGAGAGTCAGAAATCCCAGAAGAATCAAGACAAAATGCAGCAGATTCCATCACATCTGAGCAAAGCCATGAAAGCACTTTCACTGAAGAAAACACTTCTTCTCAAAGCACTTCTGGTTCCAGTTCTAGTTCCAGCGTAGAATGTTCTTCTTCCCCAAAAGGGTTCTGCCACAACCCAAGTCATAAATCTGAAGATCCAAAGGTCGAAGATAGTAATAGTTGTTCAACCTTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

196

Amino Acids

21.23

Weight (kDa)

5.83

Isoelectric Point (pI)

71.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 101, 209
AclWI GGATC 3 cut(s) 306, 319, 539
AcuI CTGAAG 2 cut(s) 456, 561
AfaI GTAC 1 cut(s) 286
AfiI CCNNNNNNNGG 1 cut(s) 510
AgsI TTSAA 5 cut(s) 117, 232, 245, 253, 576
AluBI AGCT 4 cut(s) 113, 178, 220, 241
AluI AGCT 4 cut(s) 113, 178, 220, 241
Alw26I GTCTC 1 cut(s) 85
AlwI GGATC 3 cut(s) 306, 319, 539
ApeKI GCWGC 2 cut(s) 175, 389
BamHI GGATCC 1 cut(s) 311
BbvI GCAGC 2 cut(s) 187, 401
BccI CCATC 4 cut(s) 20, 40, 50, 407
BcoDI GTCTC 1 cut(s) 85
BfaI CTAG 1 cut(s) 477
BfmI CTRYAG 1 cut(s) 167
BisI GCNGC 2 cut(s) 176, 390
BlsI GCNGC 2 cut(s) 177, 391
BmiI GGNNCC 2 cut(s) 313, 469
BmsI GCATC 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 510
Bse1I ACTGG 2 cut(s) 19, 471
BseGI GGATG 2 cut(s) 139, 319
BseLI CCNNNNNNNGG 1 cut(s) 510
BseMII CTCAG 2 cut(s) 97, 399
BseNI ACTGG 2 cut(s) 19, 471
BseXI GCAGC 2 cut(s) 187, 401
BslI CCNNNNNNNGG 1 cut(s) 510
BsmAI GTCTC 1 cut(s) 85
Bsp1407I TGTACA 1 cut(s) 284
Bsp143I GATC 3 cut(s) 189, 311, 544
BspACI CCGC 2 cut(s) 101, 209
BspCNI CTCAG 2 cut(s) 96, 400
BspLI GGNNCC 2 cut(s) 313, 469
BspPI GGATC 3 cut(s) 306, 319, 539
BsrGI TGTACA 1 cut(s) 284
BsrI ACTGG 2 cut(s) 19, 471
BssMI GATC 3 cut(s) 189, 311, 544
Bst6I CTCTTC 1 cut(s) 180
BstAUI TGTACA 1 cut(s) 284
BstC8I GCNNGC 2 cut(s) 99, 111
BstDEI CTNAG 2 cut(s) 83, 408
BstF5I GGATG 2 cut(s) 139, 319
BstKTI GATC 3 cut(s) 192, 314, 547
BstMAI GTCTC 1 cut(s) 85
BstMBI GATC 3 cut(s) 189, 311, 544
BstMWI GCNNNNNNNGC 1 cut(s) 423
BstSFI CTRYAG 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 187, 401
BstX2I RGATCY 2 cut(s) 311, 544
BstYI RGATCY 2 cut(s) 311, 544
BtsCI GGATG 2 cut(s) 139, 319
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 2 cut(s) 43, 432
Cac8I GCNNGC 2 cut(s) 99, 111
Csp6I GTAC 1 cut(s) 285
CviAII CATG 3 cut(s) 19, 332, 419
CviJI RGCY 6 cut(s) 113, 178, 220, 241, 338, 417
CviKI_1 RGCY 6 cut(s) 113, 178, 220, 241, 338, 417
CviQI GTAC 1 cut(s) 285
DdeI CTNAG 2 cut(s) 83, 408
DpnI GATC 3 cut(s) 191, 313, 546
DpnII GATC 3 cut(s) 189, 311, 544
Eam1104I CTCTTC 1 cut(s) 180
EarI CTCTTC 1 cut(s) 180
EciI GGCGGA 2 cut(s) 116, 224
Eco57I CTGAAG 2 cut(s) 456, 561
FaeI CATG 3 cut(s) 22, 335, 422
FaiI YATR 4 cut(s) 20, 333, 420, 534
FatI CATG 3 cut(s) 18, 331, 418
Fnu4HI GCNGC 2 cut(s) 176, 390
FokI GGATG 2 cut(s) 146, 306
Fsp4HI GCNGC 2 cut(s) 176, 390
FspBI CTAG 1 cut(s) 477
GluI GCNGC 2 cut(s) 176, 390
Hin1II CATG 3 cut(s) 22, 335, 422
HindIII AAGCTT 2 cut(s) 111, 239
HinfI GANTC 4 cut(s) 245, 356, 374, 395
Hpy166II GTNNAC 1 cut(s) 287
Hpy188I TCNGA 4 cut(s) 86, 361, 409, 541
Hpy188III TCNNGA 3 cut(s) 309, 323, 378
Hpy8I GTNNAC 1 cut(s) 287
HpyAV CCTTC 1 cut(s) 44
HpyCH4V TGCA 4 cut(s) 36, 125, 137, 389
HpyF10VI GCNNNNNNNGC 1 cut(s) 423
HpyF3I CTNAG 2 cut(s) 83, 408
Hsp92II CATG 3 cut(s) 22, 335, 422
Kzo9I GATC 3 cut(s) 189, 311, 544
LpnPI CCDG 7 cut(s) 83, 294, 336, 381, 450, 484, 496
Lsp1109I GCAGC 2 cut(s) 187, 401
LweI GCATC 1 cut(s) 124
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 1 cut(s) 38
MalI GATC 3 cut(s) 191, 313, 546
MboI GATC 3 cut(s) 189, 311, 544
MflI RGATCY 2 cut(s) 311, 544
MluCI AATT 1 cut(s) 256
MlyI GAGTC 1 cut(s) 365
MmeI TCCRAC 1 cut(s) 331
MnlI CCTC 6 cut(s) 60, 80, 92, 99, 124, 271
MseI TTAA 1 cut(s) 581
MwoI GCNNNNNNNGC 1 cut(s) 423
NdeII GATC 3 cut(s) 189, 311, 544
NlaIII CATG 3 cut(s) 22, 335, 422
NlaIV GGNNCC 2 cut(s) 313, 469
NmuCI GTSAC 1 cut(s) 38
PfeI GAWTC 3 cut(s) 245, 374, 395
PkrI GCNGC 2 cut(s) 177, 391
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspN4I GGNNCC 2 cut(s) 313, 469
PsrI GAACNNNNNNTAC 2 cut(s) 556, 588
PsuI RGATCY 2 cut(s) 311, 544
RsaI GTAC 1 cut(s) 286
RsaNI GTAC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 581
SatI GCNGC 2 cut(s) 176, 390
Sau3AI GATC 3 cut(s) 189, 311, 544
SchI GAGTC 1 cut(s) 365
SetI ASST 6 cut(s) 115, 180, 222, 243, 555, 581
SfaNI GCATC 1 cut(s) 124
SfcI CTRYAG 1 cut(s) 167
Sse9I AATT 1 cut(s) 256
SsiI CCGC 2 cut(s) 101, 209
SspI AATATT 1 cut(s) 227
SspMI CTAG 1 cut(s) 477
TaqI TCGA 1 cut(s) 555
TasI AATT 1 cut(s) 256
TatI WGTACW 1 cut(s) 284
TfiI GAWTC 3 cut(s) 245, 374, 395
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 2 cut(s) 43, 439
TseFI GTSAC 1 cut(s) 38
TseI GCWGC 2 cut(s) 175, 389
Tsp45I GTSAC 1 cut(s) 38
TspDTI ATGAA 3 cut(s) 294, 348, 435
TspRI CASTG 2 cut(s) 43, 439
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.