pycom12g13780

Rhomboid-like protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
16276625 .. 16279989
3365 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1176 bp
ATGGCGGGGGAGCCACCGTCATCGGGGGCCCAAATGAGAGTGAACTCACGGCGGCACTACAACGTAGTCCACCCAGTAGACATCGAGACGCCGCCGCTAGCCTCCCCAGCTCCGGCCGCGTCTCCACCCGTGTACAGAGAGATCAAGCATTTCAAGAAATGGGTTGTCTGGCTGATTCCTGTCTTTGTTGCTGCCAACGTTGTTATGTTCATCATCACCATGTATGTCAACAACTGCCCCAAGAACTCAGTCTCTTGCATTGCCACGTTCTTGGGGAGGTTCTCCTTCCAGCCTTTTAAGGAGAACCCACTTCTTGGACCGTCCTCATCGACGTTGCAGAAGATGGGGGCTTTGGATGTAAATAAGGTGGTTGACAGACACCAGGGGTGGCTTCTCATCACTTGCAATTGGCTACATGGGGGTGTTTTCCATTTATTGGCTAATATGTTGAGCCTTTTAGTCATCGGATACCGGTTAGAGCAAGAGTTCGGCTTCGTCCGGATTGGGTTGCTATATGTCATCTCTGGACTTGGTGGGAGTTTGTTGTCTTCACTTTTTATCCAAACAAACATCTCTGTTGGTGCTTCTGGTGCACTTTTCGGGTTGCTGGGAGCCATGCTTTCTGAACTTATCACTAATTGGACAATTTATGCTAGTAAGTTTGGAGCACTTTTCACCCTCCTGATCATCATAGTAATCAATTTGGCAGTGGGGACACTCCCACACGTTGACAACTTTGCTCATATTGGAGGATTCCTTTCGGGATTTTTTCTTGGGTTTGTGTTTCTTATCCGCCCCCAGTTCGGATGGGTTAACCAAAGATATACTTCTCCAGGTCCAGGATATGCCTCATCTCAAACAAAATCAAAGTTCAAGACCTATCAGTGCGTTTTGTGGGTCCTCTCTGTGATCGTTTTAATTGTTGGGTTTACAGTTGGCCTCGTTATGCTTCTTCGGGGAGTCGATGCCAATAAGCATTGTTCTTGGTGTCATTATTTATCTTGTGTTCCTACTTCAAGATGGAGCTGCAACTCGGAGCCTGCATACTGCACGACAAACCAGATGGGTGATCAAATCTATTTAACATGCTCGAGCAATGGTAAGAACGGGACGTATACGGTTCCAAATGCAAGCAGTTCTCAGATCCAGGGGTTATGTTCTCAGCTTTGCAGTTGA

Protein Analysis

392

Amino Acids

42.82

Weight (kDa)

9.13

Isoelectric Point (pI)

40.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rhomboid PF01694 127 - 263 5.9e-40 Rhomboid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011657)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 314, 436
AccI GTMKAC 2 cut(s) 78, 1115
AccII CGCG 1 cut(s) 119
AccIII TCCGGA 1 cut(s) 498
AciI CCGC 6 cut(s) 5, 52, 92, 95, 117, 793
AclI AACGTT 1 cut(s) 198
AclWI GGATC 1 cut(s) 1138
AcoI YGGCCR 1 cut(s) 114
AcyI GRCGYC 1 cut(s) 89
AfaI GTAC 1 cut(s) 134
AfiI CCNNNNNNNGG 6 cut(s) 23, 112, 314, 436, 803, 839
AflIII ACRYGT 1 cut(s) 724
AgeI ACCGGT 1 cut(s) 471
AgsI TTSAA 3 cut(s) 154, 874, 1017
AjnI CCWGG 4 cut(s) 381, 832, 838, 1146
AluBI AGCT 3 cut(s) 110, 1026, 1165
AluI AGCT 3 cut(s) 110, 1026, 1165
Alw21I GWGCWC 2 cut(s) 595, 670
Alw26I GTCTC 3 cut(s) 80, 126, 256
Alw44I GTGCAC 1 cut(s) 591
AlwI GGATC 1 cut(s) 1138
Ama87I CYCGRG 1 cut(s) 1090
Aor13HI TCCGGA 1 cut(s) 498
AoxI GGCC 3 cut(s) 27, 114, 937
ApaI GGGCCC 1 cut(s) 31
ApaLI GTGCAC 1 cut(s) 591
ApeKI GCWGC 2 cut(s) 191, 1026
AsiGI ACCGGT 1 cut(s) 471
AspS9I GGNCC 5 cut(s) 27, 28, 317, 836, 898
AsuHPI GGTGA 3 cut(s) 208, 667, 1079
AsuNHI GCTAGC 1 cut(s) 97
AvaI CYCGRG 1 cut(s) 1090
AvaII GGWCC 3 cut(s) 317, 836, 898
BaeGI GKGCMC 2 cut(s) 31, 595
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 2 cut(s) 595, 670
BbvI GCAGC 2 cut(s) 178, 1013
BccI CCATC 4 cut(s) 337, 801, 1014, 1057
BceAI ACGGC 1 cut(s) 65
BciT130I CCWGG 4 cut(s) 383, 834, 840, 1148
BciVI GTATCC 1 cut(s) 461
BclI TGATCA 2 cut(s) 684, 1069
BcoDI GTCTC 3 cut(s) 80, 126, 256
BfaI CTAG 2 cut(s) 98, 654
BfuI GTATCC 1 cut(s) 461
BisI GCNGC 6 cut(s) 53, 92, 95, 117, 192, 1027
BlsI GCNGC 6 cut(s) 54, 93, 96, 118, 193, 1028
Bme1390I CCNGG 4 cut(s) 383, 834, 840, 1148
Bme18I GGWCC 3 cut(s) 317, 836, 898
BmeT110I CYCGRG 1 cut(s) 1090
BmgT120I GGNCC 5 cut(s) 27, 28, 317, 836, 898
BmiI GGNNCC 7 cut(s) 12, 28, 29, 613, 899, 1038, 1122
BmrFI CCNGG 4 cut(s) 383, 834, 840, 1148
BmrI ACTGGG 2 cut(s) 68, 793
BmsI GCATC 1 cut(s) 955
BmtI GCTAGC 1 cut(s) 101
BmuI ACTGGG 2 cut(s) 68, 793
BpiI GAAGAC 1 cut(s) 540
BpmI CTGGAG 1 cut(s) 816
BsaHI GRCGYC 1 cut(s) 89
BsaJI CCNNGG 2 cut(s) 382, 1147
BsaWI WCCGGW 2 cut(s) 471, 498
BsaXI ACNNNNNCTCC 1 cut(s) 32
Bsc4I CCNNNNNNNGG 6 cut(s) 23, 112, 314, 436, 803, 839
Bse118I RCCGGY 1 cut(s) 471
Bse1I ACTGG 2 cut(s) 74, 799
Bse3DI GCAATG 2 cut(s) 258, 1102
BseAI TCCGGA 1 cut(s) 498
BseBI CCWGG 4 cut(s) 383, 834, 840, 1148
BseDI CCNNGG 2 cut(s) 382, 1147
BseGI GGATG 2 cut(s) 361, 812
BseLI CCNNNNNNNGG 6 cut(s) 23, 112, 314, 436, 803, 839
BseMI GCAATG 2 cut(s) 258, 1102
BseMII CTCAG 3 cut(s) 261, 1154, 1175
BseNI ACTGG 2 cut(s) 74, 799
BseSI GKGCMC 2 cut(s) 31, 595
BseX3I CGGCCG 1 cut(s) 114
BseXI GCAGC 2 cut(s) 178, 1013
BseYI CCCAGC 2 cut(s) 106, 607
BsgI GTGCAG 1 cut(s) 1033
Bsh1236I CGCG 1 cut(s) 119
Bsh1285I CGRYCG 1 cut(s) 117
BshFI GGCC 3 cut(s) 29, 116, 939
BshTI ACCGGT 1 cut(s) 471
BsiEI CGRYCG 1 cut(s) 117
BsiHKAI GWGCWC 2 cut(s) 595, 670
BsiHKCI CYCGRG 1 cut(s) 1090
BsiSI CCGG 3 cut(s) 113, 472, 499
BslFI GGGAC 2 cut(s) 727, 1123
BslI CCNNNNNNNGG 6 cut(s) 23, 112, 314, 436, 803, 839
BsmAI GTCTC 3 cut(s) 80, 126, 256
BsmBI CGTCTC 2 cut(s) 80, 126
BsmFI GGGAC 2 cut(s) 727, 1123
BsnI GGCC 3 cut(s) 29, 116, 939
BsoBI CYCGRG 1 cut(s) 1090
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 3 cut(s) 31, 595, 670
Bsp13I TCCGGA 1 cut(s) 498
Bsp1407I TGTACA 1 cut(s) 132
Bsp143I GATC 5 cut(s) 141, 684, 909, 1069, 1143
BspACI CCGC 6 cut(s) 5, 52, 92, 95, 117, 793
BspANI GGCC 3 cut(s) 29, 116, 939
BspCNI CTCAG 3 cut(s) 260, 1153, 1174
BspEI TCCGGA 1 cut(s) 498
BspFNI CGCG 1 cut(s) 119
BspLI GGNNCC 7 cut(s) 12, 28, 29, 613, 899, 1038, 1122
BspOI GCTAGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 1138
BsrDI GCAATG 2 cut(s) 258, 1102
BsrFI RCCGGY 1 cut(s) 471
BsrGI TGTACA 1 cut(s) 132
BsrI ACTGG 2 cut(s) 74, 799
BssAI RCCGGY 1 cut(s) 471
BssECI CCNNGG 2 cut(s) 382, 1147
BssMI GATC 5 cut(s) 141, 684, 909, 1069, 1143
BssNAI GTATAC 1 cut(s) 1116
BssNI GRCGYC 1 cut(s) 89
Bst1107I GTATAC 1 cut(s) 1116
Bst2UI CCWGG 4 cut(s) 383, 834, 840, 1148
Bst4CI ACNGT 4 cut(s) 18, 321, 934, 1120
BstACI GRCGYC 1 cut(s) 89
BstAUI TGTACA 1 cut(s) 132
BstC8I GCNNGC 3 cut(s) 99, 1041, 1132
BstDEI CTNAG 3 cut(s) 247, 1140, 1161
BstF5I GGATG 2 cut(s) 361, 812
BstFNI CGCG 1 cut(s) 119
BstKTI GATC 5 cut(s) 144, 687, 912, 1072, 1146
BstMAI GTCTC 3 cut(s) 80, 126, 256
BstMBI GATC 5 cut(s) 141, 684, 909, 1069, 1143
BstMCI CGRYCG 1 cut(s) 117
BstMWI GCNNNNNNNGC 3 cut(s) 107, 116, 590
BstNI CCWGG 4 cut(s) 383, 834, 840, 1148
BstNSI RCATGY 1 cut(s) 1089
BstSCI CCNGG 4 cut(s) 381, 832, 838, 1146
BstSLI GKGCMC 2 cut(s) 31, 595
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 178, 1013
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 1143
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 1 cut(s) 1143
BstZ17I GTATAC 1 cut(s) 1116
BstZI CGGCCG 1 cut(s) 114
BsuI GTATCC 1 cut(s) 461
BsuRI GGCC 3 cut(s) 29, 116, 939
BtsCI GGATG 2 cut(s) 361, 812
BtsI GCAGTG 1 cut(s) 714
BtsIMutI CAGTG 2 cut(s) 714, 890
Cac8I GCNNGC 3 cut(s) 99, 1041, 1132
Cfr10I RCCGGY 1 cut(s) 471
Cfr13I GGNCC 5 cut(s) 27, 28, 317, 836, 898
CseI GACGC 2 cut(s) 97, 108
Csp6I GTAC 1 cut(s) 133
CspAI ACCGGT 1 cut(s) 471
CviAII CATG 4 cut(s) 220, 416, 616, 1086
CviQI GTAC 1 cut(s) 133
DdeI CTNAG 3 cut(s) 247, 1140, 1161
DpnI GATC 5 cut(s) 143, 686, 911, 1071, 1145
DpnII GATC 5 cut(s) 141, 684, 909, 1069, 1143
EaeI YGGCCR 1 cut(s) 114
EagI CGGCCG 1 cut(s) 114
EciI GGCGGA 1 cut(s) 782
EclXI CGGCCG 1 cut(s) 114
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 3 cut(s) 317, 836, 898
Eco52I CGGCCG 1 cut(s) 114
Eco88I CYCGRG 1 cut(s) 1090
EcoO109I RGGNCCY 2 cut(s) 27, 898
EcoRII CCWGG 4 cut(s) 381, 832, 838, 1146
EcoT38I GRGCYC 1 cut(s) 31
Esp3I CGTCTC 2 cut(s) 80, 126
FaeI CATG 4 cut(s) 223, 419, 619, 1089
FalI AAGNNNNNCTT 2 cut(s) 811, 843
FaqI GGGAC 2 cut(s) 727, 1123
FatI CATG 4 cut(s) 219, 415, 615, 1085
FbaI TGATCA 2 cut(s) 684, 1069
FblI GTMKAC 2 cut(s) 78, 1115
Fnu4HI GCNGC 6 cut(s) 53, 92, 95, 117, 192, 1027
FokI GGATG 2 cut(s) 368, 819
FriOI GRGCYC 1 cut(s) 31
Fsp4HI GCNGC 6 cut(s) 53, 92, 95, 117, 192, 1027
FspBI CTAG 2 cut(s) 98, 654
GluI GCNGC 6 cut(s) 53, 92, 95, 117, 192, 1027
GsaI CCCAGC 2 cut(s) 110, 611
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 3 cut(s) 29, 116, 939
HapII CCGG 3 cut(s) 113, 472, 499
HgaI GACGC 2 cut(s) 97, 108
Hin1I GRCGYC 1 cut(s) 89
Hin1II CATG 4 cut(s) 223, 419, 619, 1089
HincII GTYRAC 4 cut(s) 229, 373, 730, 814
HindII GTYRAC 4 cut(s) 229, 373, 730, 814
HinfI GANTC 3 cut(s) 175, 753, 960
HpaI GTTAAC 1 cut(s) 814
HpaII CCGG 3 cut(s) 113, 472, 499
HphI GGTGA 3 cut(s) 208, 667, 1079
Hpy188I TCNGA 5 cut(s) 467, 625, 806, 1036, 1143
Hpy188III TCNNGA 8 cut(s) 85, 154, 499, 525, 682, 762, 874, 1017
Hpy99I CGWCG 1 cut(s) 334
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 4 cut(s) 18, 321, 934, 1120
HpyCH4IV ACGT 6 cut(s) 63, 198, 266, 332, 726, 1112
HpyCH4V TGCA 9 cut(s) 258, 337, 405, 593, 1029, 1043, 1050, 1130, 1170
HpyF10VI GCNNNNNNNGC 3 cut(s) 107, 116, 590
HpyF3I CTNAG 3 cut(s) 247, 1140, 1161
HpySE526I ACGT 6 cut(s) 63, 198, 266, 332, 726, 1112
Hsp92I GRCGYC 1 cut(s) 89
Hsp92II CATG 4 cut(s) 223, 419, 619, 1089
Kpn2I TCCGGA 1 cut(s) 498
Ksp22I TGATCA 2 cut(s) 684, 1069
KspAI GTTAAC 1 cut(s) 814
Kzo9I GATC 5 cut(s) 141, 684, 909, 1069, 1143
LmnI GCTCC 6 cut(s) 10, 115, 611, 665, 1023, 1036
Lsp1109I GCAGC 2 cut(s) 178, 1013
LweI GCATC 1 cut(s) 955
MaeI CTAG 2 cut(s) 98, 654
MaeII ACGT 6 cut(s) 63, 198, 266, 332, 726, 1112
MalI GATC 5 cut(s) 143, 686, 911, 1071, 1145
MboI GATC 5 cut(s) 141, 684, 909, 1069, 1143
MboII GAAGA 3 cut(s) 352, 540, 944
MfeI CAATTG 1 cut(s) 406
MflI RGATCY 1 cut(s) 1143
MhlI GDGCHC 3 cut(s) 31, 595, 670
MluCI AATT 5 cut(s) 406, 637, 645, 700, 918
MlyI GAGTC 1 cut(s) 969
MnlI CCTC 8 cut(s) 112, 270, 334, 689, 743, 859, 911, 950
MroI TCCGGA 1 cut(s) 498
MseI TTAA 4 cut(s) 297, 813, 917, 1082
MslI CAYNNNNRTG 2 cut(s) 218, 420
MspI CCGG 3 cut(s) 113, 472, 499
MspR9I CCNGG 4 cut(s) 383, 834, 840, 1148
MunI CAATTG 1 cut(s) 406
MvaI CCWGG 4 cut(s) 383, 834, 840, 1148
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 107, 116, 590
NdeII GATC 5 cut(s) 141, 684, 909, 1069, 1143
NheI GCTAGC 1 cut(s) 97
NlaIII CATG 4 cut(s) 223, 419, 619, 1089
NlaIV GGNNCC 7 cut(s) 12, 28, 29, 613, 899, 1038, 1122
NspI RCATGY 1 cut(s) 1089
PaeR7I CTCGAG 1 cut(s) 1090
PfeI GAWTC 2 cut(s) 175, 753
PflMI CCANNNNNTGG 2 cut(s) 314, 436
PfoI TCCNGGA 1 cut(s) 838
PinAI ACCGGT 1 cut(s) 471
PkrI GCNGC 6 cut(s) 54, 93, 96, 118, 193, 1028
PleI GAGTC 1 cut(s) 968
PpsI GAGTC 1 cut(s) 968
PpuMI RGGWCCY 1 cut(s) 898
Psp1406I AACGTT 1 cut(s) 198
Psp5II RGGWCCY 1 cut(s) 898
Psp6I CCWGG 4 cut(s) 381, 832, 838, 1146
PspFI CCCAGC 2 cut(s) 106, 607
PspGI CCWGG 4 cut(s) 381, 832, 838, 1146
PspN4I GGNNCC 7 cut(s) 12, 28, 29, 613, 899, 1038, 1122
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 5 cut(s) 27, 28, 317, 836, 898
PspPPI RGGWCCY 1 cut(s) 898
PspXI VCTCGAGB 1 cut(s) 1090
PsuI RGATCY 1 cut(s) 1143
RsaI GTAC 1 cut(s) 134
RsaNI GTAC 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 218, 420
SaqAI TTAA 4 cut(s) 297, 813, 917, 1082
SatI GCNGC 6 cut(s) 53, 92, 95, 117, 192, 1027
Sau3AI GATC 5 cut(s) 141, 684, 909, 1069, 1143
Sau96I GGNCC 5 cut(s) 27, 28, 317, 836, 898
SchI GAGTC 1 cut(s) 969
ScrFI CCNGG 4 cut(s) 383, 834, 840, 1148
SduI GDGCHC 3 cut(s) 31, 595, 670
SfaNI GCATC 1 cut(s) 955
Sfr274I CTCGAG 1 cut(s) 1090
SinI GGWCC 3 cut(s) 317, 836, 898
SlaI CTCGAG 1 cut(s) 1090
SmiMI CAYNNNNRTG 2 cut(s) 218, 420
SmlI CTYRAG 1 cut(s) 1090
SmoI CTYRAG 1 cut(s) 1090
Sse9I AATT 5 cut(s) 406, 637, 645, 700, 918
SsiI CCGC 6 cut(s) 5, 52, 92, 95, 117, 793
SspMI CTAG 2 cut(s) 98, 654
StyD4I CCNGG 4 cut(s) 381, 832, 838, 1146
TaaI ACNGT 4 cut(s) 18, 321, 934, 1120
TaiI ACGT 6 cut(s) 66, 201, 269, 335, 729, 1115
TaqI TCGA 4 cut(s) 84, 329, 963, 1091
TasI AATT 5 cut(s) 406, 637, 645, 700, 918
TatI WGTACW 1 cut(s) 132
TauI GCSGC 4 cut(s) 55, 94, 97, 119
TfiI GAWTC 2 cut(s) 175, 753
Tru1I TTAA 4 cut(s) 297, 813, 917, 1082
Tru9I TTAA 4 cut(s) 297, 813, 917, 1082
TscAI CASTG 2 cut(s) 714, 890
TseI GCWGC 2 cut(s) 191, 1026
TspDTI ATGAA 1 cut(s) 199
TspRI CASTG 2 cut(s) 714, 890
Van91I CCANNNNNTGG 2 cut(s) 314, 436
VneI GTGCAC 1 cut(s) 591
VpaK11BI GGWCC 3 cut(s) 317, 836, 898
XceI RCATGY 1 cut(s) 1089
XhoI CTCGAG 1 cut(s) 1090
XmiI GTMKAC 2 cut(s) 78, 1115
XspI CTAG 2 cut(s) 98, 654
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.