Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007977

Physical Location & Seq

Genomic Coordinates Forward (+)

19211339 .. 19212030

Gene Structure 692 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

ATGTGGTACCTGATAGCTGTTATTGTTTTGTGGAAATTGAATAGTGAAGTATTACTTGTCCCTGCCTATATTGATGGGAGAAGAATCATCGGTTACCTTAATTCTGGGATCCTTCTTATCGGCAGAAGCTTAGCAGTCGTTGTAACCACGACGCTAGCCACATCCGTGGCAGCCCAGGAGGGTCCTATCCCCATGGCTGGCCATCAGATTTGCATTCAAGTTTGGTTGGCAGTATCTTTGCTTACCGATGCTTTAGCACTGGCTGGTCAGTTTAATCATTACAATGATGTTTCTTCACAGACACTTCTCGCCAGTGGTTATTCCCAACAAGATTATGAACAAGCACGCCTAGTAATTTATAGAGTTCTACAGGTGCATATTTTTCTTTTCAACTGCTTCATTGTCATCGTTAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIF MatE

Protein Analysis

139

Amino Acids

15.28

Weight (kDa)

6.23

Isoelectric Point (pI)

35.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007977)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38330
fragaria_vesca	FvH4_6g10700 FvH4_6g10700
malus_domestica	MD00G1176800.v1.1 MD04G1165300.v1.1 MD12G1179400.v1.1
prunus_persica	Prupe.6G284300_v2.0.a1
pyrus_communis	pycom04g14730 pycom04g14740 pycom12g16920
rosa_chinensis	RchiOBHm_Chr3g0461701
rosa_laevigata	RLG00000024904
rosa_multiflora	Rmu_co8339943.1_g000001 Rmu_co8373083.1_g000001 Rmu_sc0012406.1_g000005 Rmu_sc0027127.1_g000001 Rmu_sc0038320.1_g000003
rosa_roxburghii	Rroxscaffold_6G00418030
rosa_rugosa	Rorug03G0053100
rosa_samantha	Rh3AG111300 Rh3BG114300 Rh3CG116500 Rh3DG116200
rosa_wichuraiana	Rw3G009420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	6
AccB1I	GGYRCC	1 cut(s)	6
AclWI	GGATC	2 cut(s)	103, 116
AcoI	YGGCCR	1 cut(s)	199
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	197
AgsI	TTSAA	3 cut(s)	40, 218, 391
AjnI	CCWGG	1 cut(s)	174
AleI	CACNNNNGTG	1 cut(s)	164
AluBI	AGCT	2 cut(s)	17, 129
AluI	AGCT	2 cut(s)	17, 129
AlwI	GGATC	2 cut(s)	103, 116
AoxI	GGCC	1 cut(s)	199
ApeKI	GCWGC	1 cut(s)	170
Asp718I	GGTACC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	182
AsuNHI	GCTAGC	1 cut(s)	154
AvaII	GGWCC	1 cut(s)	182
BalI	TGGCCA	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	6
BbvI	GCAGC	1 cut(s)	182
BccI	CCATC	2 cut(s)	68, 210
BciT130I	CCWGG	1 cut(s)	176
BfaI	CTAG	2 cut(s)	155, 350
BfmI	CTRYAG	1 cut(s)	368
BisI	GCNGC	1 cut(s)	171
BlpI	GCTNAGC	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	172
Bme1390I	CCNGG	1 cut(s)	176
Bme18I	GGWCC	1 cut(s)	182
BmgT120I	GGNCC	1 cut(s)	182
BmiI	GGNNCC	3 cut(s)	8, 110, 183
BmrFI	CCNGG	1 cut(s)	176
BmsI	GCATC	1 cut(s)	238
BmtI	GCTAGC	1 cut(s)	158
Bpu1102I	GCTNAGC	1 cut(s)	130
BsaJI	CCNNGG	3 cut(s)	165, 174, 192
Bsc4I	CCNNNNNNNGG	1 cut(s)	197
Bse1I	ACTGG	2 cut(s)	264, 312
BseBI	CCWGG	1 cut(s)	176
BseDI	CCNNGG	3 cut(s)	165, 174, 192
BseGI	GGATG	1 cut(s)	161
BseLI	CCNNNNNNNGG	1 cut(s)	197
BseNI	ACTGG	2 cut(s)	264, 312
BseXI	GCAGC	1 cut(s)	182
BshFI	GGCC	1 cut(s)	201
BshNI	GGYRCC	1 cut(s)	6
BslFI	GGGAC	1 cut(s)	44
BslI	CCNNNNNNNGG	1 cut(s)	197
BsmFI	GGGAC	1 cut(s)	44
BsmI	GAATGC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	201
Bsp143I	GATC	1 cut(s)	108
Bsp1720I	GCTNAGC	1 cut(s)	130
Bsp19I	CCATGG	1 cut(s)	192
BspANI	GGCC	1 cut(s)	201
BspLI	GGNNCC	3 cut(s)	8, 110, 183
BspOI	GCTAGC	1 cut(s)	158
BspPI	GGATC	2 cut(s)	103, 116
BspT107I	GGYRCC	1 cut(s)	6
BsrI	ACTGG	2 cut(s)	264, 312
BssECI	CCNNGG	3 cut(s)	165, 174, 192
BssMI	GATC	1 cut(s)	108
BssT1I	CCWWGG	1 cut(s)	192
Bst2UI	CCWGG	1 cut(s)	176
BstC8I	GCNNGC	3 cut(s)	156, 199, 346
BstDEI	CTNAG	1 cut(s)	130
BstDSI	CCRYGG	2 cut(s)	165, 192
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	161
BstKTI	GATC	1 cut(s)	111
BstMBI	GATC	1 cut(s)	108
BstNI	CCWGG	1 cut(s)	176
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	174
BstSFI	CTRYAG	1 cut(s)	368
BstV1I	GCAGC	1 cut(s)	182
BstX2I	RGATCY	1 cut(s)	108
BstXI	CCANNNNNNTGG	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	108
BsuRI	GGCC	1 cut(s)	201
BtgI	CCRYGG	2 cut(s)	165, 192
BtsCI	GGATG	1 cut(s)	161
BtsIMutI	CAGTG	2 cut(s)	257, 319
Cac8I	GCNNGC	3 cut(s)	156, 199, 346
Cfr13I	GGNCC	1 cut(s)	182
CseI	GACGC	1 cut(s)	160
Csp6I	GTAC	1 cut(s)	7
CviAII	CATG	1 cut(s)	193
CviJI	RGCY	7 cut(s)	17, 129, 158, 173, 197, 201, 263
CviKI_1	RGCY	7 cut(s)	17, 129, 158, 173, 197, 201, 263
CviQI	GTAC	1 cut(s)	7
DdeI	CTNAG	1 cut(s)	130
DpnI	GATC	1 cut(s)	110
DpnII	GATC	1 cut(s)	108
EaeI	YGGCCR	1 cut(s)	199
Eco130I	CCWWGG	1 cut(s)	192
Eco47I	GGWCC	1 cut(s)	182
Eco91I	GGTNACC	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	182
EcoO65I	GGTNACC	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	174
EcoT14I	CCWWGG	1 cut(s)	192
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	1 cut(s)	196
FaiI	YATR	5 cut(s)	69, 194, 336, 360, 378
FalI	AAGNNNNNCTT	2 cut(s)	39, 71
FaqI	GGGAC	1 cut(s)	44
FatI	CATG	1 cut(s)	192
Fnu4HI	GCNGC	1 cut(s)	171
FokI	GGATG	1 cut(s)	148
Fsp4HI	GCNGC	1 cut(s)	171
FspBI	CTAG	2 cut(s)	155, 350
GluI	GCNGC	1 cut(s)	171
HaeIII	GGCC	1 cut(s)	201
HgaI	GACGC	1 cut(s)	160
Hin1II	CATG	1 cut(s)	196
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	1 cut(s)	84
Hpy188I	TCNGA	1 cut(s)	207
Hpy99I	CGWCG	1 cut(s)	154
HpyAV	CCTTC	1 cut(s)	122
HpyCH4V	TGCA	2 cut(s)	213, 376
HpyF3I	CTNAG	1 cut(s)	130
Hsp92II	CATG	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	10
Kzo9I	GATC	1 cut(s)	108
Lsp1109I	GCAGC	1 cut(s)	182
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	155, 350
MaeIII	GTNAC	2 cut(s)	92, 142
MalI	GATC	1 cut(s)	110
MboI	GATC	1 cut(s)	108
MboII	GAAGA	2 cut(s)	93, 285
MflI	RGATCY	1 cut(s)	108
MlsI	TGGCCA	1 cut(s)	201
MluCI	AATT	4 cut(s)	35, 100, 354, 412
MluNI	TGGCCA	1 cut(s)	201
MnlI	CCTC	1 cut(s)	172
Mox20I	TGGCCA	1 cut(s)	201
MscI	TGGCCA	1 cut(s)	201
MseI	TTAA	3 cut(s)	99, 273, 411
MslI	CAYNNNNRTG	2 cut(s)	164, 282
Msp20I	TGGCCA	1 cut(s)	201
MspR9I	CCNGG	1 cut(s)	176
Mva1269I	GAATGC	1 cut(s)	213
MvaI	CCWGG	1 cut(s)	176
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	108
NheI	GCTAGC	1 cut(s)	154
NlaIII	CATG	1 cut(s)	196
NlaIV	GGNNCC	3 cut(s)	8, 110, 183
OliI	CACNNNNGTG	1 cut(s)	164
PctI	GAATGC	1 cut(s)	213
PfeI	GAWTC	1 cut(s)	84
PkrI	GCNGC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	182
Psp5II	RGGWCCY	1 cut(s)	182
Psp6I	CCWGG	1 cut(s)	174
PspEI	GGTNACC	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	174
PspN4I	GGNNCC	3 cut(s)	8, 110, 183
PspPI	GGNCC	1 cut(s)	182
PspPPI	RGGWCCY	1 cut(s)	182
PsuI	RGATCY	1 cut(s)	108
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
RseI	CAYNNNNRTG	2 cut(s)	164, 282
SaqAI	TTAA	3 cut(s)	99, 273, 411
SatI	GCNGC	1 cut(s)	171
Sau3AI	GATC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	182
ScrFI	CCNGG	1 cut(s)	176
SetI	ASST	5 cut(s)	12, 19, 99, 131, 375
SfaNI	GCATC	1 cut(s)	238
SfcI	CTRYAG	1 cut(s)	368
SinI	GGWCC	1 cut(s)	182
SmiMI	CAYNNNNRTG	2 cut(s)	164, 282
Sse9I	AATT	4 cut(s)	35, 100, 354, 412
SspMI	CTAG	2 cut(s)	155, 350
StyD4I	CCNGG	1 cut(s)	174
StyI	CCWWGG	1 cut(s)	192
TasI	AATT	4 cut(s)	35, 100, 354, 412
TfiI	GAWTC	1 cut(s)	84
Tru1I	TTAA	3 cut(s)	99, 273, 411
Tru9I	TTAA	3 cut(s)	99, 273, 411
TscAI	CASTG	2 cut(s)	264, 319
TseI	GCWGC	1 cut(s)	170
TspDTI	ATGAA	2 cut(s)	351, 388
TspGWI	ACGGA	1 cut(s)	154
TspRI	CASTG	2 cut(s)	264, 319
VpaK11BI	GGWCC	1 cut(s)	182
XspI	CTAG	2 cut(s)	155, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.