pycom12g18260

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Reverse (-)
20452900 .. 20458627
5728 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1920 bp
ATGAAGGGCGGGGTTCCGGGCGGTGGTCATTCCGGGAAGCGGCGATGGAAGGGGCTGGTGATTGGAGTGTTGGGTCTGGTTTTTCTTTCCATGCTTGTTCCTCTTCTCTTCCTTCTCGGCCTTCACAATGGCTTTCACCCTCCCGGTTATGTACCAGAACAACGAAGTTCGCCTTCAATTGGAGTATATGGTACAAGAATCATCATAAACGCTTCTAATATGTCAGGGGGGGTTGGTTCGAAGCGTGTAGATGATCTCGTGAAAAAGTTCGCACCAACCCTTTCAAAGGATATACTAAAGAATATTTCGCATAAAGCTATTTCACATCAAGCTAAAAATGAAACCAAAAATGTCAGTGCCATCCATAACAATGAACAAGCCAGTGCCGTCCACAACAATGAACAAGCAAAAGGATATTCAGTGCCACCTCATGATGATCCGCAATCACAACCCATTGAAAATAACTCTAAAGCTGGTGACTCAGCTCAAATCATTGATTATGCTATGGGTGGTGTGGATCAAAGTGGAAAATCATGTGAGTTGAAGTTTGGGAGCTACTGCCTTTGGCGTGAACAACATAGAGAAGACATGAAGGATGCTATGGTGAAGAGATTGAAGGATCAACTATTTGTGGCTCGAGCATATTTTCCTAGTATAGCAAAACTTGCATCACAGGACAAGTTGTCTCGTGAGATGAGACAAAATATTCAGGAGGTAGAGCGTGTACTTAGTGAAAGTACTACAGATGCTGATCTTCCCCCACAGATTGAGAAGAAGCTACGAAGGTTGCAAGCTTCAACAGCCAAAGCCAAAACATTCCATGTGGATTGTAATAACGTTGACAAGAAACTGAGACAAATATATGACATGACTGAGGATGAAGCTAACTTCCACATGAGACAAAGTGTCTTTCTCTACCAACTTGCTGTCCAGACGATGCCAAAGAGCCACCACTGCCTGTCAATGAGGCTGACTGTGGAATATTTCAGATCTCCTTTTAACGATACCGACTCCTCTCTGGCTGACAAATACATTGATCGTACATTGCAGCACTATGTCATATTCTCCACTAATGTACTTGCATCGTCAGTTGCAATCAACTCAACTGTAATGCATGCAAAAGATAGCAGGAAACTTGTTTTTCATGTGCTGACAGATCAAGAGAATTACTTTGCTATGAAACTATGGTTTTTCAGAAATACTTACAAGGAAGCCACAGTTGAGGTGTTAAACATGGAGCAGCTTAATCTGGACAACCGCAAACTATATCTTTCACTGCCGTTGGAGTTCTTTGTCTCCTATAGCATTGATGCCCAATCTAGGACCGAATACTTATCTACTTTTTCTCATTCGCACTATCTTCTCCCTGAGATATTCCAGAATTTGGAGAAAGTTGTGGTTCTGGATGATGATGTTGTTGTCCAGCAGGACTTGTCTGCACTATGGAGCCTCAACATGGAAGGGAAAGTTAATGCTGCTGTGCAGTTGTGCTCAGTGAAGTTGAGTCTGCTGAAGAGCGTTCTTGGCAAGAACAGTTTCGATAAAAATTCATGTGCTTGGATGTCTGGATTGAATGTGATTGATCTGGTTAAGTGGAGAGAGCTCGATCTCACTGAAACTTACAAAAAGTTTGTAGCGGAGGTGATGATGCAAGAGGGAGTAAATGAAGGCGCTGCACTGCATGCGAGTTTGCTTACCTTTCGGGACTTGATTTATCCTCTTGATGGTTCTTGGGCTCTGTCTGGTCTAGGTCATGACTATAACATAGATGTTTATCCGATAAAGAAAGCTGCAGTGTTGCACTATAACGGGAAGATGAAACCTTGGCTTGAGTTAGGGATCCCAAAATATAAACGATACTGGAAGATTTTTCTGAGCCGTGAAGATCAGTTCTTGAGCGACTGCAATGTGAATTCATGA

Protein Analysis

640

Amino Acids

72.43

Weight (kDa)

8.52

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 198 - 274 4.5e-25 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 319 - 611 3.9e-42 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1384
AciI CCGC 6 cut(s) 9, 21, 40, 440, 1258, 1637
AclI AACGTT 1 cut(s) 837
AclWI GGATC 5 cut(s) 431, 525, 627, 1834, 1847
AcsI RAATTY 3 cut(s) 1381, 1546, 1912
AcuI CTGAAG 1 cut(s) 1532
AfaI GTAC 6 cut(s) 153, 193, 726, 739, 1042, 1077
AfiI CCNNNNNNNGG 8 cut(s) 23, 39, 179, 286, 1320, 1384, 1456, 1724
AgsI TTSAA 7 cut(s) 177, 285, 458, 544, 616, 798, 1573
AhdI GACNNNNNGTC 2 cut(s) 682, 905
Alw21I GWGCWC 2 cut(s) 1493, 1605
Alw26I GTCTC 5 cut(s) 690, 691, 847, 892, 1300
AlwI GGATC 5 cut(s) 431, 525, 627, 1834, 1847
AlwNI CAGNNNCTG 1 cut(s) 749
Ama87I CYCGRG 1 cut(s) 636
AoxI GGCC 1 cut(s) 118
ApeKI GCWGC 5 cut(s) 1048, 1240, 1475, 1673, 1790
ApoI RAATTY 3 cut(s) 1381, 1546, 1912
Asp700I GAANNNNTTC 2 cut(s) 266, 1535
AspLEI GCGC 1 cut(s) 1673
AspS9I GGNCC 1 cut(s) 1323
AsuC2I CCSGG 3 cut(s) 18, 34, 144
AsuHPI GGTGA 5 cut(s) 70, 128, 488, 616, 1654
AsuII TTCGAA 1 cut(s) 239
AvaI CYCGRG 1 cut(s) 636
AvaII GGWCC 1 cut(s) 1323
BamHI GGATCC 1 cut(s) 1839
BanII GRGCYC 2 cut(s) 1605, 1738
BauI CACGAG 2 cut(s) 257, 687
BbsI GAAGAC 1 cut(s) 591
Bbv12I GWGCWC 2 cut(s) 1493, 1605
BbvI GCAGC 5 cut(s) 1060, 1252, 1462, 1660, 1777
BccI CCATC 3 cut(s) 39, 368, 1718
BceAI ACGGC 3 cut(s) 371, 1264, 1863
BcnI CCSGG 3 cut(s) 18, 34, 144
BcoDI GTCTC 5 cut(s) 690, 691, 847, 892, 1300
BfaI CTAG 3 cut(s) 651, 1320, 1748
BfmI CTRYAG 3 cut(s) 741, 1300, 1791
BfoI RGCGCY 1 cut(s) 1674
BglII AGATCT 1 cut(s) 989
BisI GCNGC 6 cut(s) 41, 1049, 1241, 1476, 1674, 1791
BlsI GCNGC 6 cut(s) 42, 1050, 1242, 1477, 1675, 1792
BmcAI AGTACT 1 cut(s) 739
Bme1390I CCNGG 3 cut(s) 18, 34, 144
Bme18I GGWCC 1 cut(s) 1323
BmeRI GACNNNNNGTC 2 cut(s) 682, 905
BmeT110I CYCGRG 1 cut(s) 636
BmgT120I GGNCC 1 cut(s) 1323
BmiI GGNNCC 3 cut(s) 15, 1448, 1841
BmrFI CCNGG 3 cut(s) 18, 34, 144
BmsI GCATC 7 cut(s) 586, 677, 736, 927, 1091, 1300, 1638
BpiI GAAGAC 1 cut(s) 591
Bpu14I TTCGAA 1 cut(s) 239
BpuEI CTTGAG 2 cut(s) 1850, 1915
BpuMI CCSGG 3 cut(s) 18, 34, 144
BsaBI GATNNNNATC 2 cut(s) 750, 1773
BsaJI CCNNGG 1 cut(s) 1823
Bsc4I CCNNNNNNNGG 8 cut(s) 23, 39, 179, 286, 1320, 1384, 1456, 1724
Bse1I ACTGG 2 cut(s) 381, 1865
Bse3DI GCAATG 2 cut(s) 1043, 1912
Bse8I GATNNNNATC 2 cut(s) 750, 1773
BseDI CCNNGG 1 cut(s) 1823
BseGI GGATG 5 cut(s) 360, 601, 883, 1411, 1566
BseJI GATNNNNATC 2 cut(s) 750, 1773
BseLI CCNNNNNNNGG 8 cut(s) 23, 39, 179, 286, 1320, 1384, 1456, 1724
BseMI GCAATG 2 cut(s) 1043, 1912
BseMII CTCAG 6 cut(s) 495, 842, 864, 1359, 1506, 1865
BseNI ACTGG 2 cut(s) 381, 1865
BseRI GAGGAG 1 cut(s) 1003
BseXI GCAGC 5 cut(s) 1060, 1252, 1462, 1660, 1777
BsgI GTGCAG 3 cut(s) 1422, 1502, 1659
BshFI GGCC 1 cut(s) 120
BsiHKAI GWGCWC 2 cut(s) 1493, 1605
BsiHKCI CYCGRG 1 cut(s) 636
BsiSI CCGG 3 cut(s) 17, 33, 144
BslFI GGGAC 1 cut(s) 1718
BslI CCNNNNNNNGG 8 cut(s) 23, 39, 179, 286, 1320, 1384, 1456, 1724
BsmAI GTCTC 5 cut(s) 690, 691, 847, 892, 1300
BsmFI GGGAC 1 cut(s) 1718
BsnI GGCC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 636
Bsp119I TTCGAA 1 cut(s) 239
Bsp1286I GDGCHC 3 cut(s) 1493, 1605, 1738
BspACI CCGC 6 cut(s) 9, 21, 40, 440, 1258, 1637
BspANI GGCC 1 cut(s) 120
BspCNI CTCAG 6 cut(s) 494, 843, 865, 1360, 1505, 1866
BspHI TCATGA 3 cut(s) 430, 1753, 1916
BspLI GGNNCC 3 cut(s) 15, 1448, 1841
BspMAI CTGCAG 1 cut(s) 1795
BspPI GGATC 5 cut(s) 431, 525, 627, 1834, 1847
BspQI GCTCTTC 1 cut(s) 1508
BspT104I TTCGAA 1 cut(s) 239
BsrDI GCAATG 2 cut(s) 1043, 1912
BsrI ACTGG 2 cut(s) 381, 1865
BssECI CCNNGG 1 cut(s) 1823
BssSI CACGAG 2 cut(s) 257, 687
BssT1I CCWWGG 1 cut(s) 1823
Bst2BI CACGAG 2 cut(s) 257, 687
Bst4CI ACNGT 4 cut(s) 976, 1108, 1219, 1535
Bst6I CTCTTC 4 cut(s) 108, 113, 602, 1508
BstAPI GCANNNNNTGC 2 cut(s) 665, 1682
BstBI TTCGAA 1 cut(s) 239
BstC8I GCNNGC 3 cut(s) 792, 1116, 1683
BstDEI CTNAG 7 cut(s) 481, 728, 851, 873, 1368, 1492, 1874
BstENI CCTNNNNNAGG 1 cut(s) 284
BstF5I GGATG 5 cut(s) 360, 601, 883, 1411, 1566
BstH2I RGCGCY 1 cut(s) 1674
BstHHI GCGC 1 cut(s) 1673
BstMAI GTCTC 5 cut(s) 690, 691, 847, 892, 1300
BstMWI GCNNNNNNNGC 5 cut(s) 665, 800, 954, 1524, 1682
BstNSI RCATGY 2 cut(s) 1118, 1685
BstSCI CCNGG 3 cut(s) 16, 32, 142
BstSFI CTRYAG 3 cut(s) 741, 1300, 1791
BstV1I GCAGC 5 cut(s) 1060, 1252, 1462, 1660, 1777
BstV2I GAAGAC 1 cut(s) 591
BstX2I RGATCY 2 cut(s) 989, 1839
BstYI RGATCY 2 cut(s) 989, 1839
BsuRI GGCC 1 cut(s) 120
BtgZI GCGATG 1 cut(s) 58
BtsCI GGATG 5 cut(s) 360, 601, 883, 1411, 1566
BtsI GCAGTG 4 cut(s) 952, 1274, 1676, 1800
BtsIMutI CAGTG 9 cut(s) 361, 388, 426, 952, 1274, 1500, 1611, 1676, 1800
Cac8I GCNNGC 3 cut(s) 792, 1116, 1683
CaiI CAGNNNCTG 1 cut(s) 749
CciI TCATGA 3 cut(s) 430, 1753, 1916
CfoI GCGC 1 cut(s) 1673
Cfr13I GGNCC 1 cut(s) 1323
Csp6I GTAC 6 cut(s) 152, 192, 725, 738, 1041, 1076
CviQI GTAC 6 cut(s) 152, 192, 725, 738, 1041, 1076
DdeI CTNAG 7 cut(s) 481, 728, 851, 873, 1368, 1492, 1874
DriI GACNNNNNGTC 2 cut(s) 682, 905
Eam1104I CTCTTC 4 cut(s) 108, 113, 602, 1508
Eam1105I GACNNNNNGTC 2 cut(s) 682, 905
EarI CTCTTC 4 cut(s) 108, 113, 602, 1508
Ecl136II GAGCTC 1 cut(s) 1603
Eco130I CCWWGG 1 cut(s) 1823
Eco24I GRGCYC 2 cut(s) 1605, 1738
Eco47I GGWCC 1 cut(s) 1323
Eco53kI GAGCTC 1 cut(s) 1603
Eco57I CTGAAG 1 cut(s) 1532
Eco88I CYCGRG 1 cut(s) 636
EcoICRI GAGCTC 1 cut(s) 1603
EcoNI CCTNNNNNAGG 1 cut(s) 284
EcoRI GAATTC 1 cut(s) 1912
EcoT14I CCWWGG 1 cut(s) 1823
EcoT22I ATGCAT 1 cut(s) 1116
EcoT38I GRGCYC 2 cut(s) 1605, 1738
ErhI CCWWGG 1 cut(s) 1823
FalI AAGNNNNNCTT 2 cut(s) 157, 189
FaqI GGGAC 1 cut(s) 1718
FauI CCCGC 1 cut(s) 2
Fnu4HI GCNGC 6 cut(s) 41, 1049, 1241, 1476, 1674, 1791
FokI GGATG 5 cut(s) 347, 608, 890, 1418, 1573
FriOI GRGCYC 2 cut(s) 1605, 1738
Fsp4HI GCNGC 6 cut(s) 41, 1049, 1241, 1476, 1674, 1791
FspBI CTAG 3 cut(s) 651, 1320, 1748
GlaI GCGC 1 cut(s) 1672
GluI GCNGC 6 cut(s) 41, 1049, 1241, 1476, 1674, 1791
HaeII RGCGCY 1 cut(s) 1674
HaeIII GGCC 1 cut(s) 120
HapII CCGG 3 cut(s) 17, 33, 144
HhaI GCGC 1 cut(s) 1673
Hin6I GCGC 1 cut(s) 1671
HinP1I GCGC 1 cut(s) 1671
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 1 cut(s) 792
HinfI GANTC 4 cut(s) 198, 479, 1010, 1504
HpaII CCGG 3 cut(s) 17, 33, 144
HphI GGTGA 5 cut(s) 70, 128, 488, 616, 1654
Hpy166II GTNNAC 4 cut(s) 391, 572, 725, 841
Hpy188I TCNGA 4 cut(s) 989, 1196, 1779, 1875
Hpy8I GTNNAC 4 cut(s) 391, 572, 725, 841
HpyAV CCTTC 9 cut(s) 43, 122, 131, 183, 586, 610, 777, 1454, 1661
HpyCH4III ACNGT 4 cut(s) 976, 1108, 1219, 1535
HpyCH4IV ACGT 1 cut(s) 837
HpyF10VI GCNNNNNNNGC 5 cut(s) 665, 800, 954, 1524, 1682
HpyF3I CTNAG 7 cut(s) 481, 728, 851, 873, 1368, 1492, 1874
HpySE526I ACGT 1 cut(s) 837
HspAI GCGC 1 cut(s) 1671
LguI GCTCTTC 1 cut(s) 1508
LmnI GCTCC 3 cut(s) 552, 1237, 1446
Lsp1109I GCAGC 5 cut(s) 1060, 1252, 1462, 1660, 1777
LweI GCATC 7 cut(s) 586, 677, 736, 927, 1091, 1300, 1638
MaeI CTAG 3 cut(s) 651, 1320, 1748
MaeII ACGT 1 cut(s) 837
MaeIII GTNAC 1 cut(s) 476
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 2 cut(s) 989, 1839
MhlI GDGCHC 3 cut(s) 1493, 1605, 1738
MluCI AATT 5 cut(s) 177, 1165, 1381, 1546, 1912
MlyI GAGTC 3 cut(s) 473, 1004, 1513
MmeI TCCRAC 1 cut(s) 1263
Mph1103I ATGCAT 1 cut(s) 1116
MroXI GAANNNNTTC 2 cut(s) 266, 1535
MseI TTAA 5 cut(s) 999, 1229, 1245, 1470, 1590
MslI CAYNNNNRTG 2 cut(s) 369, 396
MspI CCGG 3 cut(s) 17, 33, 144
MspR9I CCNGG 3 cut(s) 18, 34, 144
MunI CAATTG 1 cut(s) 177
MwoI GCNNNNNNNGC 5 cut(s) 665, 800, 954, 1524, 1682
NciI CCSGG 3 cut(s) 18, 34, 144
NlaIV GGNNCC 3 cut(s) 15, 1448, 1841
NmeAIII GCCGAG 1 cut(s) 96
NmuCI GTSAC 1 cut(s) 476
NsiI ATGCAT 1 cut(s) 1116
NspI RCATGY 2 cut(s) 1118, 1685
NspV TTCGAA 1 cut(s) 239
PaeI GCATGC 2 cut(s) 1118, 1685
PaeR7I CTCGAG 1 cut(s) 636
PagI TCATGA 3 cut(s) 430, 1753, 1916
PciSI GCTCTTC 1 cut(s) 1508
PdmI GAANNNNTTC 2 cut(s) 266, 1535
PfeI GAWTC 1 cut(s) 198
PflMI CCANNNNNTGG 1 cut(s) 1384
PfoI TCCNGGA 1 cut(s) 32
PkrI GCNGC 6 cut(s) 42, 1050, 1242, 1477, 1675, 1792
PleI GAGTC 3 cut(s) 473, 1004, 1512
PpsI GAGTC 3 cut(s) 473, 1004, 1512
Psp124BI GAGCTC 1 cut(s) 1605
Psp1406I AACGTT 1 cut(s) 837
PspN4I GGNNCC 3 cut(s) 15, 1448, 1841
PspPI GGNCC 1 cut(s) 1323
PspXI VCTCGAGB 1 cut(s) 636
PstI CTGCAG 1 cut(s) 1795
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 2 cut(s) 989, 1839
RsaI GTAC 6 cut(s) 153, 193, 726, 739, 1042, 1077
RsaNI GTAC 6 cut(s) 152, 192, 725, 738, 1041, 1076
RseI CAYNNNNRTG 2 cut(s) 369, 396
SacI GAGCTC 1 cut(s) 1605
SapI GCTCTTC 1 cut(s) 1508
SaqAI TTAA 5 cut(s) 999, 1229, 1245, 1470, 1590
SatI GCNGC 6 cut(s) 41, 1049, 1241, 1476, 1674, 1791
Sau96I GGNCC 1 cut(s) 1323
ScaI AGTACT 1 cut(s) 739
SchI GAGTC 3 cut(s) 473, 1004, 1513
ScrFI CCNGG 3 cut(s) 18, 34, 144
SduI GDGCHC 3 cut(s) 1493, 1605, 1738
SfaNI GCATC 7 cut(s) 586, 677, 736, 927, 1091, 1300, 1638
SfcI CTRYAG 3 cut(s) 741, 1300, 1791
Sfr274I CTCGAG 1 cut(s) 636
SfuI TTCGAA 1 cut(s) 239
SinI GGWCC 1 cut(s) 1323
SlaI CTCGAG 1 cut(s) 636
SmiMI CAYNNNNRTG 2 cut(s) 369, 396
SmlI CTYRAG 3 cut(s) 636, 1829, 1894
SmoI CTYRAG 3 cut(s) 636, 1829, 1894
SphI GCATGC 2 cut(s) 1118, 1685
Sse9I AATT 5 cut(s) 177, 1165, 1381, 1546, 1912
SsiI CCGC 6 cut(s) 9, 21, 40, 440, 1258, 1637
SspI AATATT 3 cut(s) 304, 706, 983
SspMI CTAG 3 cut(s) 651, 1320, 1748
SstI GAGCTC 1 cut(s) 1605
StyD4I CCNGG 3 cut(s) 16, 32, 142
StyI CCWWGG 1 cut(s) 1823
TaaI ACNGT 4 cut(s) 976, 1108, 1219, 1535
TaiI ACGT 1 cut(s) 840
TaqI TCGA 4 cut(s) 239, 637, 1539, 1605
TaqII GACCGA 1 cut(s) 1340
TasI AATT 5 cut(s) 177, 1165, 1381, 1546, 1912
TatI WGTACW 3 cut(s) 724, 737, 1075
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 1 cut(s) 198
Tru1I TTAA 5 cut(s) 999, 1229, 1245, 1470, 1590
Tru9I TTAA 5 cut(s) 999, 1229, 1245, 1470, 1590
TscAI CASTG 9 cut(s) 361, 388, 426, 959, 1281, 1500, 1618, 1683, 1800
TseFI GTSAC 1 cut(s) 476
TseI GCWGC 5 cut(s) 1048, 1240, 1475, 1673, 1790
Tsp45I GTSAC 1 cut(s) 476
TspRI CASTG 9 cut(s) 361, 388, 426, 959, 1281, 1500, 1618, 1683, 1800
Van91I CCANNNNNTGG 1 cut(s) 1384
VpaK11BI GGWCC 1 cut(s) 1323
XagI CCTNNNNNAGG 1 cut(s) 284
XapI RAATTY 3 cut(s) 1381, 1546, 1912
XceI RCATGY 2 cut(s) 1118, 1685
XhoI CTCGAG 1 cut(s) 636
XmnI GAANNNNTTC 2 cut(s) 266, 1535
XspI CTAG 3 cut(s) 651, 1320, 1748
ZrmI AGTACT 1 cut(s) 739
Zsp2I ATGCAT 1 cut(s) 1116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.