transcription factor
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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g11671 FvH4_6g07631 FvH4_6g07633 |
| pyrus_communis | pycom12g19220 |
| rosa_laevigata | RLG00000004863 |
| rosa_roxburghii | Rroxscaffold_2G00142700 Rroxscaffold_3G00268420 |
| rosa_rugosa | Rorug02G0084300 |
| rosa_samantha | Rh2AG133300 Rh2BG136900 Rh2CG138400 Rh2DG138800 Rh3BG081600 Rh3CG082000 Rh7AG069500 Rh7DG078700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 203 |
| Acc36I | ACCTGC | 1 cut(s) | 203 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 245 |
| AciI | CCGC | 1 cut(s) | 158 |
| AcsI | RAATTY | 1 cut(s) | 265 |
| AcuI | CTGAAG | 1 cut(s) | 191 |
| AfaI | GTAC | 1 cut(s) | 103 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 245 |
| AgsI | TTSAA | 1 cut(s) | 143 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 7, 39 |
| AluBI | AGCT | 2 cut(s) | 93, 343 |
| AluI | AGCT | 2 cut(s) | 93, 343 |
| Alw26I | GTCTC | 1 cut(s) | 188 |
| ApoI | RAATTY | 1 cut(s) | 265 |
| AsuHPI | GGTGA | 1 cut(s) | 227 |
| BaeGI | GKGCMC | 1 cut(s) | 80 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 88, 120 |
| BceAI | ACGGC | 1 cut(s) | 150 |
| BclI | TGATCA | 1 cut(s) | 55 |
| BcoDI | GTCTC | 1 cut(s) | 188 |
| BfuAI | ACCTGC | 1 cut(s) | 203 |
| BisI | GCNGC | 1 cut(s) | 159 |
| BlsI | GCNGC | 1 cut(s) | 160 |
| BmcAI | AGTACT | 1 cut(s) | 103 |
| BmrI | ACTGGG | 1 cut(s) | 255 |
| BmsI | GCATC | 1 cut(s) | 342 |
| BmuI | ACTGGG | 1 cut(s) | 255 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 168, 198 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 245 |
| Bse1I | ACTGG | 1 cut(s) | 250 |
| BseGI | GGATG | 1 cut(s) | 357 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BseMII | CTCAG | 1 cut(s) | 273 |
| BseNI | ACTGG | 1 cut(s) | 250 |
| BseSI | GKGCMC | 1 cut(s) | 80 |
| BsgI | GTGCAG | 1 cut(s) | 93 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 245 |
| BsmAI | GTCTC | 1 cut(s) | 188 |
| BsmI | GAATGC | 1 cut(s) | 304 |
| Bsp1286I | GDGCHC | 1 cut(s) | 80 |
| Bsp143I | GATC | 2 cut(s) | 55, 291 |
| BspACI | CCGC | 1 cut(s) | 158 |
| BspCNI | CTCAG | 1 cut(s) | 274 |
| BspHI | TCATGA | 1 cut(s) | 307 |
| BspMI | ACCTGC | 1 cut(s) | 203 |
| BsrI | ACTGG | 1 cut(s) | 250 |
| BssMI | GATC | 2 cut(s) | 55, 291 |
| Bst4CI | ACNGT | 1 cut(s) | 68 |
| Bst6I | CTCTTC | 1 cut(s) | 282 |
| BstDEI | CTNAG | 1 cut(s) | 282 |
| BstF5I | GGATG | 1 cut(s) | 357 |
| BstKTI | GATC | 2 cut(s) | 58, 294 |
| BstMAI | GTCTC | 1 cut(s) | 188 |
| BstMBI | GATC | 2 cut(s) | 55, 291 |
| BstSLI | GKGCMC | 1 cut(s) | 80 |
| BtsCI | GGATG | 1 cut(s) | 357 |
| BtsIMutI | CAGTG | 1 cut(s) | 110 |
| BveI | ACCTGC | 1 cut(s) | 203 |
| CciI | TCATGA | 1 cut(s) | 307 |
| Csp6I | GTAC | 1 cut(s) | 102 |
| CviAII | CATG | 2 cut(s) | 308, 317 |
| CviJI | RGCY | 6 cut(s) | 46, 93, 161, 238, 251, 343 |
| CviKI_1 | RGCY | 6 cut(s) | 46, 93, 161, 238, 251, 343 |
| CviQI | GTAC | 1 cut(s) | 102 |
| DdeI | CTNAG | 1 cut(s) | 282 |
| DpnI | GATC | 2 cut(s) | 57, 293 |
| DpnII | GATC | 2 cut(s) | 55, 291 |
| Eam1104I | CTCTTC | 1 cut(s) | 282 |
| EarI | CTCTTC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 1 cut(s) | 191 |
| EcoRI | GAATTC | 1 cut(s) | 265 |
| FaeI | CATG | 2 cut(s) | 311, 320 |
| FaiI | YATR | 7 cut(s) | 21, 122, 164, 202, 204, 309, 318 |
| FatI | CATG | 2 cut(s) | 307, 316 |
| FbaI | TGATCA | 1 cut(s) | 55 |
| Fnu4HI | GCNGC | 1 cut(s) | 159 |
| Fsp4HI | GCNGC | 1 cut(s) | 159 |
| GluI | GCNGC | 1 cut(s) | 159 |
| Hin1II | CATG | 2 cut(s) | 311, 320 |
| HindIII | AAGCTT | 1 cut(s) | 341 |
| HinfI | GANTC | 2 cut(s) | 36, 181 |
| HphI | GGTGA | 1 cut(s) | 227 |
| Hpy188I | TCNGA | 4 cut(s) | 41, 55, 60, 271 |
| Hpy188III | TCNNGA | 4 cut(s) | 33, 257, 295, 308 |
| HpyAV | CCTTC | 1 cut(s) | 36 |
| HpyCH4III | ACNGT | 1 cut(s) | 68 |
| HpyCH4V | TGCA | 2 cut(s) | 110, 302 |
| HpyF3I | CTNAG | 1 cut(s) | 282 |
| Hsp92II | CATG | 2 cut(s) | 311, 320 |
| Ksp22I | TGATCA | 1 cut(s) | 55 |
| Kzo9I | GATC | 2 cut(s) | 55, 291 |
| LpnPI | CCDG | 5 cut(s) | 18, 198, 231, 332, 337 |
| LweI | GCATC | 1 cut(s) | 342 |
| MaeIII | GTNAC | 2 cut(s) | 62, 149 |
| MalI | GATC | 2 cut(s) | 57, 293 |
| MboI | GATC | 2 cut(s) | 55, 291 |
| MboII | GAAGA | 2 cut(s) | 184, 299 |
| MhlI | GDGCHC | 1 cut(s) | 80 |
| MluCI | AATT | 3 cut(s) | 143, 219, 265 |
| MlyI | GAGTC | 2 cut(s) | 30, 190 |
| MnlI | CCTC | 1 cut(s) | 277 |
| MseI | TTAA | 2 cut(s) | 234, 358 |
| Mva1269I | GAATGC | 1 cut(s) | 304 |
| NdeII | GATC | 2 cut(s) | 55, 291 |
| NlaIII | CATG | 2 cut(s) | 311, 320 |
| PagI | TCATGA | 1 cut(s) | 307 |
| PaqCI | CACCTGC | 1 cut(s) | 203 |
| PctI | GAATGC | 1 cut(s) | 304 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 245 |
| PkrI | GCNGC | 1 cut(s) | 160 |
| PleI | GAGTC | 2 cut(s) | 30, 189 |
| PpsI | GAGTC | 2 cut(s) | 30, 189 |
| RsaI | GTAC | 1 cut(s) | 103 |
| RsaNI | GTAC | 1 cut(s) | 102 |
| SaqAI | TTAA | 2 cut(s) | 234, 358 |
| SatI | GCNGC | 1 cut(s) | 159 |
| Sau3AI | GATC | 2 cut(s) | 55, 291 |
| ScaI | AGTACT | 1 cut(s) | 103 |
| SchI | GAGTC | 2 cut(s) | 30, 190 |
| SduI | GDGCHC | 1 cut(s) | 80 |
| SetI | ASST | 3 cut(s) | 95, 217, 345 |
| SfaNI | GCATC | 1 cut(s) | 342 |
| Sse9I | AATT | 3 cut(s) | 143, 219, 265 |
| SsiI | CCGC | 1 cut(s) | 158 |
| SspI | AATATT | 1 cut(s) | 85 |
| TaaI | ACNGT | 1 cut(s) | 68 |
| TasI | AATT | 3 cut(s) | 143, 219, 265 |
| TatI | WGTACW | 1 cut(s) | 101 |
| TauI | GCSGC | 1 cut(s) | 161 |
| Tru1I | TTAA | 2 cut(s) | 234, 358 |
| Tru9I | TTAA | 2 cut(s) | 234, 358 |
| TscAI | CASTG | 1 cut(s) | 117 |
| TspDTI | ATGAA | 2 cut(s) | 296, 305 |
| TspRI | CASTG | 1 cut(s) | 117 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 245 |
| XapI | RAATTY | 1 cut(s) | 265 |
| ZrmI | AGTACT | 1 cut(s) | 103 |