Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0013694

Physical Location & Seq

Genomic Coordinates Reverse (-)

21170006 .. 21177843

Gene Structure 7838 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g19270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3006 bp

ATGTTACCGAATTTTGAAAATACTCTTGTGGAGAAGAAGGTGGCGAAAGAGAATTGGCAACCAACATTGATAGGTTCTACATCTGCAGAACAGAAGCGGTTCCCCCAGCTGCACTCACAAAAGAAAGAGATGAAAAGACGTCGTGGTTTTCCACGAGGGACACAAAGTGCTTATACTATCTTCCTCAGGAAAGAATGTGAGCGGTTGAAAAATTCTGCTTCAGAGCAACTTAAGGGTCAAAGGATCTTAGACTTGGCCGTCAAGGCATGGAGGTGCCTCTCTGAGAGTGAGAAACAGCCATATATTGAGGCAAGTAAGAGGGTTAATGAAAAAAGAGCGGCTCAAGAAATGATGGCTGATGAGGAAAACCATGGCATGCAAAATGCAGAAAGAGGGAAGAAGCCTTCACAATCACACAACGGGAACTGCCCCGCGGCATTGCAATCTGATACGGAAAAATCCTGTGTTCAAAATCAAGCAGTGAATTTTCAAGAAAGTCTCCTAGAAGGGATCTACTGGAGTTCAACATCTTCAGAACAGAAACAATTCCCCCAGCTAAGTTCAAAGAGAAAAGAGATGAAAAAGCGTTGTGGCGCTCCTCGAGGGGCACAAAGTGGTTATCATATCTACCTCAGGAAAGAATGCGAAAGGCTGAAAAGTACTGATGCAGGGAAACTGAAGGGTCAAAATTTCCGAGCCATGGCAGACAATGCATGGAGATCCTTCTCTGAGACTGAGAAACTGCCATACATTGAGGCAAGTAAGAAGGTTAATGGAAAACGACTGGCTCAACAAGTGACTGCTGATGAGGAAAACCTGCGCATGCAAAATCTAGAGTTTCCGTTGGGGGTTGCCCTTGAAGTCGAAGAGGCTTTATATTCCGGTGAAAGGCGGATGCTATACAAAACGACAGGACATTATCTGCAGCCTGACTTTACATTCTGCAATCCGCACCTATTAGCCAAAATACTGGATAGCACAGCCTATGAGAGCAAAAAGATGAGCACATCCACCACCACAAATCTTCCTCACAACATCAAACCAAATGAATCCTCAGAAGATATCAAATCTCCCACCCCCAAGCTCTCCCAGAAAACAATCTTACACATCGTAAACACGAAATGCGCAACTTCGCTGCAACATCTCAAGCAAGCTCATGGTGTTGCCCTGAGGTCTGGCCACTTCCAAGACCATTACGTGGCCGGGGCTATCGTGAAATGCTACGCAAGCAACAACTTCGGGCTTGCGTTGAATGTCTTCGATTGCGTGTGGAGACCGAATGTGTTTGTGTGGAATATTGTGATCAAAGGGTGCCTAGAGCACAATGAGGCATTCAGTTGTGTGTCATATTATTGTAAGATGGTGGATATGAATGCCAGGCCTAATAAGTTCACGTATTCCATGTTGTTCAAAGCCTGTTCGTTGGCTCAAGCGGTGGAGGAAGCCCTGCAAATCCACGCGCATGTTGTTAAAAATCAGTTTGGTGAAGATGGGCACATAAGGAGCGCTGGGATTCAAATGTACGCGTCTTTTGGGCTCGTGGAGGAGGCAAGGATAATGTTCGATGAGGGTGGGGAAGCGAACGATGTTGTTTGTTGGAACGCGATGATTGATGGTTACATGAAATGTGGAGATGTAGAGGTAGCTAAAGCATTGTTTTATAAGCATATGGCGAGTAAAAATATCGGTTCTTGGAATGCAATGGTGAGCGGTCTTGCTAGGTGTGGCAGGATTAAAGAGGCGAGGGAGTTGTTTGACGGCATGAGCGAAAGGGACGAGATATCTTGGAGTGCTATGATTGATGGCTATATTCAAGGAGGGTTTCACAAGGAGGCCTTGGAAATTTTCAATGAGATGCAAAAGGAGAATCTAATTAGTCCGAAAAAATTCGTGTTGTCAAGTGTGCTAGCTGCTTGTGCTAATGTGGGAGCGCTTGATCAAGGAAAATGGATTCATGCTTACATCAAGAAGAACAATATTCAGTTGGATGCGGTTCTTGGGACTGCTTTGCTTGACATGTACGCAAAATGCGGGCGGATTGACATGGCGTGGGAGGTGTTTGAAAATGTCAAACAGAAAGAGATTTCGACATGGAATGCCATGATTGGAGCGCTTGCTATGCACGGCCGAGCAGAGGATGCAGTTGAACTTTTTGCCAAGATGCAGATGCGTAAGTTGGAACCAAATGGAATTACATTTTTGAATGCCTTAACTGCTTGTGCTCATTCAGGTTTTGTCGAGAAAGGTCTTGAAATTTTCAGTTCTATGAAGAGATTTTATGGCATTCAGCCTGAGGTGGAGCACTACGGGTGTGTGGTTGATATGTTTGGAAGGGCAGGGAAATTGGAAGAGGCAGAGCAGCTCATAAACTTGATGCCAATCGAACCCAATGCGGCAGTTTGGGGGGCGTTATTAGGCGCTTGCAGGATACATGGAAATGTCGAAATGGGAGAGAGAGTCGGAAAGATTTTGCTCGAATTGGAGCCTCAAAACAGCGGTCGCTACACATTGTTATCAAACATTTACGCGAAGGCAGGCAGGTTTGATGATGCTGCAAAGGTAAGAACTTTGATGAAGGAAAGAGGGGTGAAGACAAGTCCAGGGATTAGCATGGTCGACATTGGTGGCATTGTTCATGAATTCAAAGTGGGAGACGGATCACACCCGAATACTAAGGAGGTCTATTCGATGCTGGAGAGGATCATAGAGAAGCTGCAGACGGAGGGCTATTCGCTGAATAGCTCACAAGTCTTGTTTGACATTGCAGAGGAGGAGAAGGAAAGTGCATTGCAGTACCACAGTGAAAAGCTTGCCATTGCTTTCGGAGTCCTCAACACAAAACCCGGAACAGCCATTCGCGTCACGAAGAACTTGAGGATCTGTGAGGATTGCCATTCTGCAGTAAAGATCTTCTCAAAAGTATACGAAAGGGATGTGATCGTTAGGGACCGGATGCGGTATCATCATTTTAGAAATGGAAGGTGTTCATGTAAGGATTTTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

1002

Amino Acids

112.89

Weight (kDa)

8.62

Isoelectric Point (pI)

45.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07610
malus_domestica	MD12G1204800.v1.1 MD13G1139300.v1.1 MD16G1136500.v1.1
prunus_persica	Prupe.1G105500_v2.0.a1 Prupe.6G312000_v2.0.a1
pyrus_communis	pycom12g19270 pycom13g12120 pycom16g12010
rosa_chinensis	RchiOBHm_Chr3g0457261
rosa_laevigata	RLG00000025238
rosa_multiflora	Rmu_co8517633.1_g000001 Rmu_sc0005442.1_g000015
rosa_roxburghii	Rroxscaffold_6G00422030
rosa_rugosa	Rorug03G0019600
rosa_samantha	Rh3BG081300 Rh3DG083300
rosa_wichuraiana	Rw3G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1662
AasI	GACNNNNNNGTC	1 cut(s)	257
AatII	GACGTC	1 cut(s)	142
AbsI	CCTCGAGG	1 cut(s)	600
Acc16I	TGCGCA	2 cut(s)	821, 1126
Acc36I	ACCTGC	2 cut(s)	825, 2529
AccB1I	GGYRCC	2 cut(s)	273, 1311
AccB7I	CCANNNNNTGG	1 cut(s)	1198
AccBSI	CCGCTC	3 cut(s)	202, 338, 1710
AccI	GTMKAC	2 cut(s)	2616, 2922
AccII	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
AclWI	GGATC	6 cut(s)	251, 518, 714, 2665, 2708, 2885
AcoI	YGGCCR	4 cut(s)	255, 1177, 1200, 2125
AcsI	RAATTY	8 cut(s)	10, 211, 484, 688, 1842, 1886, 2253, 2639
AcuI	CTGAAG	3 cut(s)	204, 516, 698
AcyI	GRCGYC	1 cut(s)	139
AdeI	CACNNNGTG	2 cut(s)	167, 614
AfaI	GTAC	4 cut(s)	661, 1523, 2021, 2795
AfeI	AGCGCT	3 cut(s)	1507, 1932, 2112
AfiI	CCNNNNNNNGG	4 cut(s)	700, 888, 1198, 2134
AflII	CTTAAG	1 cut(s)	230
AflIII	ACRYGT	2 cut(s)	1524, 2016
AjnI	CCWGG	2 cut(s)	1376, 2599
Alw21I	GWGCWC	4 cut(s)	1007, 1323, 2224, 2304
Alw26I	GTCTC	4 cut(s)	503, 725, 1267, 2646
AlwI	GGATC	6 cut(s)	251, 518, 714, 2665, 2708, 2885
Ama87I	CYCGRG	1 cut(s)	600
Aor51HI	AGCGCT	3 cut(s)	1507, 1932, 2112
AoxI	GGCC	6 cut(s)	255, 1177, 1200, 1379, 1833, 2125
ApeKI	GCWGC	7 cut(s)	109, 925, 1135, 1910, 2359, 2552, 2713
ApoI	RAATTY	8 cut(s)	10, 211, 484, 688, 1842, 1886, 2253, 2639
ArsI	GACNNNNNNTTYG	2 cut(s)	2482, 2514
Asp700I	GAANNNNTTC	5 cut(s)	98, 545, 1256, 1886, 2983
AspLEI	GCGC	8 cut(s)	596, 822, 1127, 1462, 1508, 1933, 2113, 2420
AspS9I	GGNCC	1 cut(s)	2947
AsuC2I	CCSGG	2 cut(s)	1204, 2844
AsuHPI	GGTGA	4 cut(s)	896, 1496, 1717, 2599
AsuNHI	GCTAGC	1 cut(s)	1906
AvaI	CYCGRG	1 cut(s)	600
AvaII	GGWCC	1 cut(s)	2947
AxyI	CCTNAGG	4 cut(s)	185, 632, 1169, 2292
BaeGI	GKGCMC	2 cut(s)	610, 1497
BalI	TGGCCA	1 cut(s)	1179
BanI	GGYRCC	2 cut(s)	273, 1311
BanII	GRGCYC	1 cut(s)	1539
BauI	CACGAG	2 cut(s)	153, 1538
BbsI	GAAGAC	2 cut(s)	1249, 2597
Bbv12I	GWGCWC	4 cut(s)	1007, 1323, 2224, 2304
BbvI	GCAGC	7 cut(s)	96, 937, 1122, 1897, 2371, 2539, 2700
BccI	CCATC	5 cut(s)	346, 1354, 1484, 1607, 1796
BceAI	ACGGC	3 cut(s)	242, 1774, 2140
BcgI	CGANNNNNNTGC	4 cut(s)	1219, 1253, 2372, 2406
BciT130I	CCWGG	2 cut(s)	1378, 2601
BciVI	GTATCC	1 cut(s)	2421
BclI	TGATCA	2 cut(s)	1302, 1936
BcnI	CCSGG	2 cut(s)	1204, 2844
BcoDI	GTCTC	4 cut(s)	503, 725, 1267, 2646
BfaI	CTAG	5 cut(s)	503, 833, 1316, 1719, 1907
BfmI	CTRYAG	4 cut(s)	84, 923, 2714, 2898
BfoI	RGCGCY	5 cut(s)	597, 1509, 1934, 2114, 2421
BfrI	CTTAAG	1 cut(s)	230
BfuAI	ACCTGC	2 cut(s)	825, 2529
BfuI	GTATCC	1 cut(s)	2421
BglI	GCCNNNNNGGC	1 cut(s)	263
BglII	AGATCT	1 cut(s)	2907
BmcAI	AGTACT	1 cut(s)	661
Bme1390I	CCNGG	4 cut(s)	1204, 1378, 2601, 2844
Bme18I	GGWCC	1 cut(s)	2947
BmeT110I	CYCGRG	1 cut(s)	600
BmgT120I	GGNCC	1 cut(s)	2947
BmiI	GGNNCC	6 cut(s)	101, 275, 1313, 2181, 2484, 2948
BmrFI	CCNGG	4 cut(s)	1204, 1378, 2601, 2844
BmtI	GCTAGC	1 cut(s)	1910
BpiI	GAAGAC	2 cut(s)	1249, 2597
BpmI	CTGGAG	2 cut(s)	538, 2714
BpuEI	CTTGAG	4 cut(s)	327, 1130, 1413, 2893
BpuMI	CCSGG	2 cut(s)	1204, 2844
BsaAI	YACGTR	2 cut(s)	1198, 1395
BsaBI	GATNNNNATC	1 cut(s)	2378
BsaHI	GRCGYC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	1267
BsaJI	CCNNGG	6 cut(s)	370, 432, 699, 1203, 1836, 2600
BsaWI	WCCGGW	2 cut(s)	881, 2949
BsaXI	ACNNNNNCTCC	2 cut(s)	2442, 2472
Bsc4I	CCNNNNNNNGG	4 cut(s)	700, 888, 1198, 2134
Bse1I	ACTGG	3 cut(s)	521, 789, 975
Bse21I	CCTNAGG	4 cut(s)	185, 632, 1169, 2292
Bse3DI	GCAATG	5 cut(s)	437, 1707, 2760, 2786, 2814
Bse8I	GATNNNNATC	1 cut(s)	2378
BseBI	CCWGG	2 cut(s)	1378, 2601
BseDI	CCNNGG	6 cut(s)	370, 432, 699, 1203, 1836, 2600
BseGI	GGATG	6 cut(s)	900, 1007, 1993, 2143, 2938, 2958
BseJI	GATNNNNATC	1 cut(s)	2378
BseLI	CCNNNNNNNGG	4 cut(s)	700, 888, 1198, 2134
BseMI	GCAATG	5 cut(s)	437, 1707, 2760, 2786, 2814
BseMII	CTCAG	8 cut(s)	199, 273, 646, 720, 726, 1068, 1160, 2283
BseNI	ACTGG	3 cut(s)	521, 789, 975
BseRI	GAGGAG	4 cut(s)	588, 1559, 2783, 2786
BseSI	GKGCMC	2 cut(s)	610, 1497
BseX3I	CGGCCG	1 cut(s)	2125
BseXI	GCAGC	7 cut(s)	96, 937, 1122, 1897, 2371, 2539, 2700
BseYI	CCCAGC	3 cut(s)	105, 552, 1508
BsgI	GTGCAG	1 cut(s)	95
Bsh1236I	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
Bsh1285I	CGRYCG	2 cut(s)	2128, 2500
BshFI	GGCC	6 cut(s)	257, 1179, 1202, 1381, 1835, 2127
BshNI	GGYRCC	2 cut(s)	273, 1311
BsiEI	CGRYCG	2 cut(s)	2128, 2500
BsiHKAI	GWGCWC	4 cut(s)	1007, 1323, 2224, 2304
BsiHKCI	CYCGRG	1 cut(s)	600
BsiSI	CCGG	4 cut(s)	882, 1203, 2844, 2950
BslFI	GGGAC	4 cut(s)	172, 1787, 2014, 2960
BslI	CCNNNNNNNGG	4 cut(s)	700, 888, 1198, 2134
BsmAI	GTCTC	4 cut(s)	503, 725, 1267, 2646
BsmBI	CGTCTC	1 cut(s)	2646
BsmFI	GGGAC	4 cut(s)	172, 1787, 2014, 2960
BsmI	GAATGC	7 cut(s)	647, 1331, 1378, 1702, 2101, 2209, 2283
BsnI	GGCC	6 cut(s)	257, 1179, 1202, 1381, 1835, 2127
Bso31I	GGTCTC	1 cut(s)	1267
BsoBI	CYCGRG	1 cut(s)	600
Bsp1286I	GDGCHC	7 cut(s)	610, 1007, 1323, 1497, 1539, 2224, 2304
Bsp19I	CCATGG	2 cut(s)	370, 699
BspANI	GGCC	6 cut(s)	257, 1179, 1202, 1381, 1835, 2127
BspCNI	CTCAG	8 cut(s)	198, 274, 645, 721, 727, 1067, 1161, 2284
BspFNI	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
BspHI	TCATGA	1 cut(s)	2635
BspLI	GGNNCC	6 cut(s)	101, 275, 1313, 2181, 2484, 2948
BspMAI	CTGCAG	4 cut(s)	88, 927, 2718, 2902
BspMI	ACCTGC	2 cut(s)	825, 2529
BspOI	GCTAGC	1 cut(s)	1910
BspPI	GGATC	6 cut(s)	251, 518, 714, 2665, 2708, 2885
BspT107I	GGYRCC	2 cut(s)	273, 1311
BspTI	CTTAAG	1 cut(s)	230
BspTNI	GGTCTC	1 cut(s)	1267
BsrBI	CCGCTC	3 cut(s)	202, 338, 1710
BsrDI	GCAATG	5 cut(s)	437, 1707, 2760, 2786, 2814
BsrI	ACTGG	3 cut(s)	521, 789, 975
BssECI	CCNNGG	6 cut(s)	370, 432, 699, 1203, 1836, 2600
BssNAI	GTATAC	1 cut(s)	2923
BssNI	GRCGYC	1 cut(s)	139
BssSI	CACGAG	2 cut(s)	153, 1538
BssT1I	CCWWGG	3 cut(s)	370, 699, 1836
Bst1107I	GTATAC	1 cut(s)	2923
Bst2BI	CACGAG	2 cut(s)	153, 1538
Bst2UI	CCWGG	2 cut(s)	1378, 2601
Bst4CI	ACNGT	1 cut(s)	2801
Bst6I	CTCTTC	3 cut(s)	861, 2264, 2343
BstACI	GRCGYC	1 cut(s)	139
BstAFI	CTTAAG	1 cut(s)	230
BstAPI	GCANNNNNTGC	2 cut(s)	710, 2138
BstBAI	YACGTR	2 cut(s)	1198, 1395
BstDSI	CCRYGG	3 cut(s)	370, 432, 699
BstF5I	GGATG	6 cut(s)	900, 1007, 1993, 2143, 2938, 2958
BstFNI	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
BstH2I	RGCGCY	5 cut(s)	597, 1509, 1934, 2114, 2421
BstHHI	GCGC	8 cut(s)	596, 822, 1127, 1462, 1508, 1933, 2113, 2420
BstMAI	GTCTC	4 cut(s)	503, 725, 1267, 2646
BstMCI	CGRYCG	2 cut(s)	2128, 2500
BstMWI	GCNNNNNNNGC	7 cut(s)	263, 710, 1227, 1916, 2119, 2138, 2213
BstNI	CCWGG	2 cut(s)	1378, 2601
BstNSI	RCATGY	4 cut(s)	379, 826, 1466, 2020
BstSCI	CCNGG	4 cut(s)	1202, 1376, 2599, 2842
BstSFI	CTRYAG	4 cut(s)	84, 923, 2714, 2898
BstSLI	GKGCMC	2 cut(s)	610, 1497
BstUI	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
BstV1I	GCAGC	7 cut(s)	96, 937, 1122, 1897, 2371, 2539, 2700
BstV2I	GAAGAC	2 cut(s)	1249, 2597
BstX2I	RGATCY	5 cut(s)	243, 510, 719, 2877, 2907
BstXI	CCANNNNNNTGG	1 cut(s)	970
BstYI	RGATCY	5 cut(s)	243, 510, 719, 2877, 2907
BstZ17I	GTATAC	1 cut(s)	2923
BstZI	CGGCCG	1 cut(s)	2125
Bsu36I	CCTNAGG	4 cut(s)	185, 632, 1169, 2292
BsuI	GTATCC	1 cut(s)	2421
BsuRI	GGCC	6 cut(s)	257, 1179, 1202, 1381, 1835, 2127
BtgI	CCRYGG	3 cut(s)	370, 432, 699
BtgZI	GCGATG	1 cut(s)	1619
BtsCI	GGATG	6 cut(s)	900, 1007, 1993, 2143, 2938, 2958
BtsI	GCAGTG	1 cut(s)	486
BtsIMutI	CAGTG	2 cut(s)	486, 2806
BveI	ACCTGC	2 cut(s)	825, 2529
CciI	TCATGA	1 cut(s)	2635
CfoI	GCGC	8 cut(s)	596, 822, 1127, 1462, 1508, 1933, 2113, 2420
Cfr13I	GGNCC	1 cut(s)	2947
Cfr42I	CCGCGG	1 cut(s)	435
CseI	GACGC	2 cut(s)	1515, 2848
Csp6I	GTAC	4 cut(s)	660, 1522, 2020, 2794
CviQI	GTAC	4 cut(s)	660, 1522, 2020, 2794
DraIII	CACNNNGTG	2 cut(s)	167, 614
DrdI	GACNNNNNNGTC	1 cut(s)	257
DseDI	GACNNNNNNGTC	1 cut(s)	257
EaeI	YGGCCR	4 cut(s)	255, 1177, 1200, 2125
EagI	CGGCCG	1 cut(s)	2125
Eam1104I	CTCTTC	3 cut(s)	861, 2264, 2343
EarI	CTCTTC	3 cut(s)	861, 2264, 2343
EciI	GGCGGA	2 cut(s)	907, 2050
EclXI	CGGCCG	1 cut(s)	2125
Eco130I	CCWWGG	3 cut(s)	370, 699, 1836
Eco147I	AGGCCT	2 cut(s)	1381, 1835
Eco24I	GRGCYC	1 cut(s)	1539
Eco31I	GGTCTC	1 cut(s)	1267
Eco32I	GATATC	2 cut(s)	1063, 1782
Eco47I	GGWCC	1 cut(s)	2947
Eco47III	AGCGCT	3 cut(s)	1507, 1932, 2112
Eco52I	CGGCCG	1 cut(s)	2125
Eco57I	CTGAAG	3 cut(s)	204, 516, 698
Eco81I	CCTNAGG	4 cut(s)	185, 632, 1169, 2292
Eco88I	CYCGRG	1 cut(s)	600
EcoRI	GAATTC	1 cut(s)	2639
EcoRII	CCWGG	2 cut(s)	1376, 2599
EcoRV	GATATC	2 cut(s)	1063, 1782
EcoT14I	CCWWGG	3 cut(s)	370, 699, 1836
EcoT22I	ATGCAT	1 cut(s)	715
EcoT38I	GRGCYC	1 cut(s)	1539
ErhI	CCWWGG	3 cut(s)	370, 699, 1836
Esp3I	CGTCTC	1 cut(s)	2646
FalI	AAGNNNNNCTT	2 cut(s)	1820, 1852
FaqI	GGGAC	4 cut(s)	172, 1787, 2014, 2960
FauI	CCCGC	2 cut(s)	439, 2024
FauNDI	CATATG	1 cut(s)	1668
FbaI	TGATCA	2 cut(s)	1302, 1936
FblI	GTMKAC	2 cut(s)	2616, 2922
FokI	GGATG	6 cut(s)	907, 994, 2000, 2150, 2945, 2965
FriOI	GRGCYC	1 cut(s)	1539
FspBI	CTAG	5 cut(s)	503, 833, 1316, 1719, 1907
FspI	TGCGCA	2 cut(s)	821, 1126
GlaI	GCGC	8 cut(s)	595, 821, 1126, 1461, 1507, 1932, 2112, 2419
GsaI	CCCAGC	3 cut(s)	109, 556, 1512
GsuI	CTGGAG	2 cut(s)	538, 2714
HaeII	RGCGCY	5 cut(s)	597, 1509, 1934, 2114, 2421
HaeIII	GGCC	6 cut(s)	257, 1179, 1202, 1381, 1835, 2127
HapII	CCGG	4 cut(s)	882, 1203, 2844, 2950
HgaI	GACGC	2 cut(s)	1515, 2848
HhaI	GCGC	8 cut(s)	596, 822, 1127, 1462, 1508, 1933, 2113, 2420
Hin1I	GRCGYC	1 cut(s)	139
Hin6I	GCGC	8 cut(s)	594, 820, 1125, 1460, 1506, 1931, 2111, 2418
HinP1I	GCGC	8 cut(s)	594, 820, 1125, 1460, 1506, 1931, 2111, 2418
HincII	GTYRAC	1 cut(s)	2617
HindII	GTYRAC	1 cut(s)	2617
HindIII	AAGCTT	1 cut(s)	2807
HinfI	GANTC	6 cut(s)	1049, 1513, 1867, 1951, 2457, 2826
HpaII	CCGG	4 cut(s)	882, 1203, 2844, 2950
HphI	GGTGA	4 cut(s)	896, 1496, 1717, 2599
Hpy166II	GTNNAC	4 cut(s)	1114, 1392, 2617, 2923
Hpy8I	GTNNAC	4 cut(s)	1114, 1392, 2617, 2923
Hpy99I	CGWCG	1 cut(s)	144
HpyCH4III	ACNGT	1 cut(s)	2801
HpyCH4IV	ACGT	3 cut(s)	139, 1197, 1394
HpyF10VI	GCNNNNNNNGC	7 cut(s)	263, 710, 1227, 1916, 2119, 2138, 2213
HpySE526I	ACGT	3 cut(s)	139, 1197, 1394
Hsp92I	GRCGYC	1 cut(s)	139
HspAI	GCGC	8 cut(s)	594, 820, 1125, 1460, 1506, 1931, 2111, 2418
Ksp22I	TGATCA	2 cut(s)	1302, 1936
KspI	CCGCGG	1 cut(s)	435
LmnI	GCTCC	6 cut(s)	601, 1503, 1928, 2108, 2299, 2482
Lsp1109I	GCAGC	7 cut(s)	96, 937, 1122, 1897, 2371, 2539, 2700
MaeI	CTAG	5 cut(s)	503, 833, 1316, 1719, 1907
MaeII	ACGT	3 cut(s)	139, 1197, 1394
MaeIII	GTNAC	4 cut(s)	3, 796, 1616, 2860
MbiI	CCGCTC	3 cut(s)	202, 338, 1710
MflI	RGATCY	5 cut(s)	243, 510, 719, 2877, 2907
MhlI	GDGCHC	7 cut(s)	610, 1007, 1323, 1497, 1539, 2224, 2304
MlsI	TGGCCA	1 cut(s)	1179
MluI	ACGCGT	1 cut(s)	1524
MluNI	TGGCCA	1 cut(s)	1179
MlyI	GAGTC	2 cut(s)	2466, 2835
MmeI	TCCRAC	4 cut(s)	1577, 1965, 2157, 2440
Mox20I	TGGCCA	1 cut(s)	1179
Mph1103I	ATGCAT	1 cut(s)	715
MroXI	GAANNNNTTC	5 cut(s)	98, 545, 1256, 1886, 2983
MscI	TGGCCA	1 cut(s)	1179
MseI	TTAA	6 cut(s)	231, 324, 771, 1470, 1734, 2210
MslI	CAYNNNNRTG	3 cut(s)	271, 1461, 2436
Msp20I	TGGCCA	1 cut(s)	1179
MspA1I	CMGCKG	3 cut(s)	109, 434, 2496
MspCI	CTTAAG	1 cut(s)	230
MspI	CCGG	4 cut(s)	882, 1203, 2844, 2950
MspR9I	CCNGG	4 cut(s)	1204, 1378, 2601, 2844
Mva1269I	GAATGC	7 cut(s)	647, 1331, 1378, 1702, 2101, 2209, 2283
MvaI	CCWGG	2 cut(s)	1378, 2601
MvnI	CGCG	6 cut(s)	434, 1460, 1526, 1604, 2528, 2859
MwoI	GCNNNNNNNGC	7 cut(s)	263, 710, 1227, 1916, 2119, 2138, 2213
NciI	CCSGG	2 cut(s)	1204, 2844
NcoI	CCATGG	2 cut(s)	370, 699
NdeI	CATATG	1 cut(s)	1668
NheI	GCTAGC	1 cut(s)	1906
NlaIV	GGNNCC	6 cut(s)	101, 275, 1313, 2181, 2484, 2948
NmeAIII	GCCGAG	1 cut(s)	2153
NmuCI	GTSAC	2 cut(s)	796, 2860
NsbI	TGCGCA	2 cut(s)	821, 1126
NsiI	ATGCAT	1 cut(s)	715
NspI	RCATGY	4 cut(s)	379, 826, 1466, 2020
PaeI	GCATGC	2 cut(s)	379, 826
PaeR7I	CTCGAG	1 cut(s)	600
PagI	TCATGA	1 cut(s)	2635
PceI	AGGCCT	2 cut(s)	1381, 1835
PciI	ACATGT	1 cut(s)	2016
PcsI	WCGNNNNNNNCGW	1 cut(s)	1764
PctI	GAATGC	7 cut(s)	647, 1331, 1378, 1702, 2101, 2209, 2283
PdmI	GAANNNNTTC	5 cut(s)	98, 545, 1256, 1886, 2983
PfeI	GAWTC	4 cut(s)	1049, 1513, 1867, 1951
PflMI	CCANNNNNTGG	1 cut(s)	1198
PleI	GAGTC	2 cut(s)	2465, 2834
PpsI	GAGTC	2 cut(s)	2465, 2834
Ppu21I	YACGTR	2 cut(s)	1198, 1395
PscI	ACATGT	1 cut(s)	2016
PsiI	TTATAA	1 cut(s)	1662
Psp6I	CCWGG	2 cut(s)	1376, 2599
PspFI	CCCAGC	3 cut(s)	105, 552, 1508
PspGI	CCWGG	2 cut(s)	1376, 2599
PspN4I	GGNNCC	6 cut(s)	101, 275, 1313, 2181, 2484, 2948
PspPI	GGNCC	1 cut(s)	2947
PspXI	VCTCGAGB	1 cut(s)	600
PstI	CTGCAG	4 cut(s)	88, 927, 2718, 2902
PsuI	RGATCY	5 cut(s)	243, 510, 719, 2877, 2907
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	4 cut(s)	661, 1523, 2021, 2795
RsaNI	GTAC	4 cut(s)	660, 1522, 2020, 2794
RseI	CAYNNNNRTG	3 cut(s)	271, 1461, 2436
SacII	CCGCGG	1 cut(s)	435
SalI	GTCGAC	1 cut(s)	2615
SaqAI	TTAA	6 cut(s)	231, 324, 771, 1470, 1734, 2210
Sau96I	GGNCC	1 cut(s)	2947
ScaI	AGTACT	1 cut(s)	661
SchI	GAGTC	2 cut(s)	2466, 2835
ScrFI	CCNGG	4 cut(s)	1204, 1378, 2601, 2844
SduI	GDGCHC	7 cut(s)	610, 1007, 1323, 1497, 1539, 2224, 2304
SfcI	CTRYAG	4 cut(s)	84, 923, 2714, 2898
Sfr274I	CTCGAG	1 cut(s)	600
Sfr303I	CCGCGG	1 cut(s)	435
SgrBI	CCGCGG	1 cut(s)	435
SinI	GGWCC	1 cut(s)	2947
SlaI	CTCGAG	1 cut(s)	600
SmiMI	CAYNNNNRTG	3 cut(s)	271, 1461, 2436
SmlI	CTYRAG	6 cut(s)	230, 342, 600, 1145, 1428, 2872
SmoI	CTYRAG	6 cut(s)	230, 342, 600, 1145, 1428, 2872
SphI	GCATGC	2 cut(s)	379, 826
SseBI	AGGCCT	2 cut(s)	1381, 1835
SspI	AATATT	2 cut(s)	1297, 1978
SspMI	CTAG	5 cut(s)	503, 833, 1316, 1719, 1907
StuI	AGGCCT	2 cut(s)	1381, 1835
StyD4I	CCNGG	4 cut(s)	1202, 1376, 2599, 2842
StyI	CCWWGG	3 cut(s)	370, 699, 1836
TaaI	ACNGT	1 cut(s)	2801
TaiI	ACGT	3 cut(s)	142, 1200, 1397
TaqII	GACCGA	1 cut(s)	1291
TatI	WGTACW	1 cut(s)	659
TauI	GCSGC	3 cut(s)	341, 437, 2396
TfiI	GAWTC	4 cut(s)	1049, 1513, 1867, 1951
Tru1I	TTAA	6 cut(s)	231, 324, 771, 1470, 1734, 2210
Tru9I	TTAA	6 cut(s)	231, 324, 771, 1470, 1734, 2210
TscAI	CASTG	2 cut(s)	486, 2806
TseFI	GTSAC	2 cut(s)	796, 2860
TseI	GCWGC	7 cut(s)	109, 925, 1135, 1910, 2359, 2552, 2713
Tsp45I	GTSAC	2 cut(s)	796, 2860
TspGWI	ACGGA	4 cut(s)	467, 831, 2670, 2735
TspRI	CASTG	2 cut(s)	486, 2806
Van91I	CCANNNNNTGG	1 cut(s)	1198
Vha464I	CTTAAG	1 cut(s)	230
VpaK11BI	GGWCC	1 cut(s)	2947
XapI	RAATTY	8 cut(s)	10, 211, 484, 688, 1842, 1886, 2253, 2639
XbaI	TCTAGA	1 cut(s)	832
XceI	RCATGY	4 cut(s)	379, 826, 1466, 2020
XhoI	CTCGAG	1 cut(s)	600
XmiI	GTMKAC	2 cut(s)	2616, 2922
XmnI	GAANNNNTTC	5 cut(s)	98, 545, 1256, 1886, 2983
XspI	CTAG	5 cut(s)	503, 833, 1316, 1719, 1907
ZraI	GACGTC	1 cut(s)	140
ZrmI	AGTACT	1 cut(s)	661
Zsp2I	ATGCAT	1 cut(s)	715

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.