Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8517633.1

Orthogroup ID

OG0013694

Physical Location & Seq

Genomic Coordinates Forward (+)

20 .. 1657

Gene Structure 1638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8517633.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1638 bp

atgaattccaggcctaacaagttcacctatcccatgttgttcaaggcctgcagattagttcaagcagtggaggaaggtctccaaattcatgcacatgtggtgaagcagcagcttagtgaagatgggcacataagaagtgctgggattcaaatgtatgcgtctttcgggcttgtggaggaggcaaggaggatattgctagacaactcggcgtcgtctgatgttgtttgttggaatgcaatgattgatgggtacatgaaatgtggggatgcagaagcagctaaggagttgtttgataagcacatgccaattaagaatgttgggtcttggaatgcaatggtgagtggttttgctaagtgtgggaggttgacagatgcaagggcggtgtttgatgaaatgattgagagagatgagatttcttggagtgctatgattgatggttatgtgcaaggagggtatcacaaggaggcattggaagttttcaatgagatgcaaaaggagaagattgttagtccaaggaaattcgtattgtcgagtgtgttagctgcttgtgccaatgtgggagcacttgatcaaggaaagtggattcatggttatattaagaagaactcaattcaggtggatgcactactggggactgctttggttgatatgtatgccaaatgtgggaggcttgacatggcatgggaagtgtttgaaaatgtgaaacagaaagaggtttcgacatggaatgccatgattggtgggcttgctatgcacggccgagcagatgatgcattggatgttttcttcaagatgcaagggaataatttggaaccaaatgggattacttttctgaatgctctaagtgcttgtgctcatgggggttttgttgatgaaggtcttacaattttcagttctatgaaggaaatgtatggtatggaggctgaggtagagcactatggttgtgtggttgatatgtttggaagggcaggacttttggaagaggcagagcaggttataaattcaatgccaattgaacctagtgcagctgtttatggtgccctgttaggcgcttgcaggatacatggaaatgttgaaatgggtgagagagtagggaggattttgcttgaattggaaccgcaaaacagtggacgttacgcattgttatctaacatctatgcaaaggcaggtatgtgggacgatgttgcagaggtaagaaaattgatgaaggaaaggggagtaaagactattcctggaattagcatggttgatattggtggcaaagtacatgaattcaaaatgggagatgggtcacacccacaaatgaaggaggtctacttgatgcttgaaaagattatagaaaagctggagacagagggttattcaccgaatacatctcaagttttgtttgacattgcagaggaggagaaggaaactgcactgcggtaccacagtgagaagcttgcaattgctttcggagtacttaacacaaaacctggaacaaccatccgggttgtgaagaacttgaggatttgtgaggactgtcattctgccataaagctcttttcacaatcatacaaccgggatataattgtgagggaccgtatgcgctatcatcattttagaaatggaaggtgttcgtgcaaggatttttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

545

Amino Acids

60.96

Weight (kDa)

5.87

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07610
malus_domestica	MD12G1204800.v1.1 MD13G1139300.v1.1 MD16G1136500.v1.1
prunus_persica	Prupe.1G105500_v2.0.a1 Prupe.6G312000_v2.0.a1
pyrus_communis	pycom12g19270 pycom13g12120 pycom16g12010
rosa_chinensis	RchiOBHm_Chr3g0457261
rosa_laevigata	RLG00000025238
rosa_multiflora	Rmu_co8517633.1_g000001 Rmu_sc0005442.1_g000015
rosa_roxburghii	Rroxscaffold_6G00422030
rosa_rugosa	Rorug03G0019600
rosa_samantha	Rh3BG081300 Rh3DG083300
rosa_wichuraiana	Rw3G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	998
Acc36I	ACCTGC	2 cut(s)	982, 1157
Acc65I	GGTACC	1 cut(s)	1425
AccB1I	GGYRCC	2 cut(s)	1037, 1425
AccI	GTMKAC	1 cut(s)	1314
AciI	CCGC	3 cut(s)	380, 1118, 1423
AcoI	YGGCCR	1 cut(s)	757
AcsI	RAATTY	5 cut(s)	4, 84, 518, 1000, 1271
AcyI	GRCGYC	1 cut(s)	209
AfaI	GTAC	4 cut(s)	251, 1266, 1427, 1461
AfiI	CCNNNNNNNGG	1 cut(s)	663
AflIII	ACRYGT	1 cut(s)	94
AjnI	CCWGG	3 cut(s)	8, 1231, 1474
AluBI	AGCT	7 cut(s)	112, 278, 542, 1028, 1345, 1441, 1540
AluI	AGCT	7 cut(s)	112, 278, 542, 1028, 1345, 1441, 1540
Alw21I	GWGCWC	3 cut(s)	565, 856, 936
Alw26I	GTCTC	2 cut(s)	83, 1343
AoxI	GGCC	3 cut(s)	11, 45, 757
ApeKI	GCWGC	5 cut(s)	106, 109, 275, 542, 1025
ApoI	RAATTY	5 cut(s)	4, 84, 518, 1000, 1271
Asp700I	GAANNNNTTC	1 cut(s)	1615
Asp718I	GGTACC	1 cut(s)	1425
AspLEI	GCGC	2 cut(s)	1052, 1590
AspS9I	GGNCC	1 cut(s)	1579
AsuC2I	CCSGG	2 cut(s)	1490, 1562
AsuHPI	GGTGA	5 cut(s)	16, 112, 349, 1094, 1356
AvaII	GGWCC	1 cut(s)	1579
BaeGI	GKGCMC	2 cut(s)	129, 1042
BaeI	ACNNNNGTAYC	4 cut(s)	1409, 1417, 1442, 1450
BanI	GGYRCC	2 cut(s)	1037, 1425
BarI	GAAGNNNNNNTAC	2 cut(s)	1298, 1330
Bbv12I	GWGCWC	3 cut(s)	565, 856, 936
BbvCI	CCTCAGC	1 cut(s)	924
BbvI	GCAGC	5 cut(s)	118, 121, 287, 529, 1037
BccI	CCATC	5 cut(s)	116, 239, 428, 1280, 1493
BceAI	ACGGC	1 cut(s)	772
BciT130I	CCWGG	3 cut(s)	10, 1233, 1476
BciVI	GTATCC	1 cut(s)	1053
BclI	TGATCA	1 cut(s)	568
BcnI	CCSGG	2 cut(s)	1490, 1562
BcoDI	GTCTC	2 cut(s)	83, 1343
BfaI	CTAG	2 cut(s)	197, 1020
BfmI	CTRYAG	1 cut(s)	49
BfoI	RGCGCY	1 cut(s)	1053
BfuAI	ACCTGC	2 cut(s)	982, 1157
BfuI	GTATCC	1 cut(s)	1053
BisI	GCNGC	5 cut(s)	107, 110, 276, 543, 1026
BlsI	GCNGC	5 cut(s)	108, 111, 277, 544, 1027
BmcAI	AGTACT	1 cut(s)	1461
Bme1390I	CCNGG	5 cut(s)	10, 1233, 1476, 1490, 1562
Bme18I	GGWCC	1 cut(s)	1579
BmgT120I	GGNCC	1 cut(s)	1579
BmiI	GGNNCC	5 cut(s)	813, 1039, 1116, 1427, 1580
BmrFI	CCNGG	5 cut(s)	10, 1233, 1476, 1490, 1562
BmrI	ACTGGG	1 cut(s)	638
BmsI	GCATC	7 cut(s)	256, 361, 477, 610, 760, 783, 1311
BmuI	ACTGGG	1 cut(s)	638
BpmI	CTGGAG	1 cut(s)	1367
Bpu10I	CCTNAGC	2 cut(s)	279, 924
BpuEI	CTTGAG	2 cut(s)	1362, 1525
BpuMI	CCSGG	2 cut(s)	1490, 1562
BsaHI	GRCGYC	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	83
BsaJI	CCNNGG	1 cut(s)	512
Bsc4I	CCNNNNNNNGG	1 cut(s)	663
Bse1I	ACTGG	1 cut(s)	633
Bse3DI	GCAATG	3 cut(s)	243, 339, 1392
BseBI	CCWGG	3 cut(s)	10, 1233, 1476
BseDI	CCNNGG	1 cut(s)	512
BseGI	GGATG	4 cut(s)	271, 625, 784, 1485
BseLI	CCNNNNNNNGG	1 cut(s)	663
BseMI	GCAATG	3 cut(s)	243, 339, 1392
BseMII	CTCAG	1 cut(s)	915
BseNI	ACTGG	1 cut(s)	633
BseRI	GAGGAG	3 cut(s)	191, 1415, 1418
BseSI	GKGCMC	2 cut(s)	129, 1042
BseX3I	CGGCCG	1 cut(s)	757
BseXI	GCAGC	5 cut(s)	118, 121, 287, 529, 1037
BseYI	CCCAGC	1 cut(s)	140
BsgI	GTGCAG	2 cut(s)	1044, 1401
Bsh1285I	CGRYCG	1 cut(s)	760
BshFI	GGCC	3 cut(s)	13, 47, 759
BshNI	GGYRCC	2 cut(s)	1037, 1425
BsiEI	CGRYCG	1 cut(s)	760
BsiHKAI	GWGCWC	3 cut(s)	565, 856, 936
BsiSI	CCGG	2 cut(s)	1489, 1561
BslFI	GGGAC	3 cut(s)	646, 1190, 1592
BslI	CCNNNNNNNGG	1 cut(s)	663
BsmAI	GTCTC	2 cut(s)	83, 1343
BsmFI	GGGAC	3 cut(s)	646, 1190, 1592
BsmI	GAATGC	4 cut(s)	238, 334, 733, 841
BsnI	GGCC	3 cut(s)	13, 47, 759
Bso31I	GGTCTC	1 cut(s)	83
Bsp1286I	GDGCHC	5 cut(s)	129, 565, 856, 936, 1042
Bsp143I	GATC	1 cut(s)	568
BspACI	CCGC	3 cut(s)	380, 1118, 1423
BspANI	GGCC	3 cut(s)	13, 47, 759
BspCNI	CTCAG	1 cut(s)	916
BspLI	GGNNCC	5 cut(s)	813, 1039, 1116, 1427, 1580
BspMAI	CTGCAG	1 cut(s)	53
BspMI	ACCTGC	2 cut(s)	982, 1157
BspT107I	GGYRCC	2 cut(s)	1037, 1425
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	3 cut(s)	243, 339, 1392
BsrI	ACTGG	1 cut(s)	633
BssECI	CCNNGG	1 cut(s)	512
BssMI	GATC	1 cut(s)	568
BssNI	GRCGYC	1 cut(s)	209
BssT1I	CCWWGG	1 cut(s)	512
Bst2UI	CCWGG	3 cut(s)	10, 1233, 1476
Bst4CI	ACNGT	4 cut(s)	1127, 1433, 1523, 1583
Bst6I	CTCTTC	1 cut(s)	975
BstACI	GRCGYC	1 cut(s)	209
BstAPI	GCANNNNNTGC	1 cut(s)	770
BstC8I	GCNNGC	4 cut(s)	49, 747, 1054, 1443
BstDEI	CTNAG	5 cut(s)	113, 279, 351, 842, 924
BstF5I	GGATG	4 cut(s)	271, 625, 784, 1485
BstH2I	RGCGCY	1 cut(s)	1053
BstHHI	GCGC	2 cut(s)	1052, 1590
BstKTI	GATC	1 cut(s)	571
BstMAI	GTCTC	2 cut(s)	83, 1343
BstMBI	GATC	1 cut(s)	568
BstMCI	CGRYCG	1 cut(s)	760
BstMWI	GCNNNNNNNGC	5 cut(s)	275, 548, 751, 770, 845
BstNI	CCWGG	3 cut(s)	10, 1233, 1476
BstNSI	RCATGY	2 cut(s)	98, 304
BstSCI	CCNGG	5 cut(s)	8, 1231, 1474, 1488, 1560
BstSFI	CTRYAG	1 cut(s)	49
BstSLI	GKGCMC	2 cut(s)	129, 1042
BstV1I	GCAGC	5 cut(s)	118, 121, 287, 529, 1037
BstZI	CGGCCG	1 cut(s)	757
BsuI	GTATCC	1 cut(s)	1053
BsuRI	GGCC	3 cut(s)	13, 47, 759
BtsCI	GGATG	4 cut(s)	271, 625, 784, 1485
BtsI	GCAGTG	2 cut(s)	72, 1418
BtsIMutI	CAGTG	4 cut(s)	72, 1132, 1418, 1438
BveI	ACCTGC	2 cut(s)	982, 1157
Cac8I	GCNNGC	4 cut(s)	49, 747, 1054, 1443
CfoI	GCGC	2 cut(s)	1052, 1590
Cfr13I	GGNCC	1 cut(s)	1579
CseI	GACGC	2 cut(s)	147, 198
Csp6I	GTAC	4 cut(s)	250, 1265, 1426, 1460
CspCI	CAANNNNNGTGG	4 cut(s)	560, 595, 597, 632
CviQI	GTAC	4 cut(s)	250, 1265, 1426, 1460
DdeI	CTNAG	5 cut(s)	113, 279, 351, 842, 924
DpnI	GATC	1 cut(s)	570
DpnII	GATC	1 cut(s)	568
EaeI	YGGCCR	1 cut(s)	757
EagI	CGGCCG	1 cut(s)	757
Eam1104I	CTCTTC	1 cut(s)	975
EarI	CTCTTC	1 cut(s)	975
EclXI	CGGCCG	1 cut(s)	757
Eco130I	CCWWGG	1 cut(s)	512
Eco147I	AGGCCT	2 cut(s)	13, 47
Eco31I	GGTCTC	1 cut(s)	83
Eco47I	GGWCC	1 cut(s)	1579
Eco52I	CGGCCG	1 cut(s)	757
EcoRI	GAATTC	2 cut(s)	4, 1271
EcoRII	CCWGG	3 cut(s)	8, 1231, 1474
EcoT14I	CCWWGG	1 cut(s)	512
EcoT22I	ATGCAT	1 cut(s)	775
ErhI	CCWWGG	1 cut(s)	512
FaqI	GGGAC	3 cut(s)	646, 1190, 1592
FbaI	TGATCA	1 cut(s)	568
FblI	GTMKAC	1 cut(s)	1314
Fnu4HI	GCNGC	5 cut(s)	107, 110, 276, 543, 1026
FokI	GGATG	4 cut(s)	278, 632, 791, 1472
Fsp4HI	GCNGC	5 cut(s)	107, 110, 276, 543, 1026
FspBI	CTAG	2 cut(s)	197, 1020
GlaI	GCGC	2 cut(s)	1051, 1589
GluI	GCNGC	5 cut(s)	107, 110, 276, 543, 1026
GsaI	CCCAGC	1 cut(s)	144
GsuI	CTGGAG	1 cut(s)	1367
HaeII	RGCGCY	1 cut(s)	1053
HaeIII	GGCC	3 cut(s)	13, 47, 759
HapII	CCGG	2 cut(s)	1489, 1561
HgaI	GACGC	2 cut(s)	147, 198
HhaI	GCGC	2 cut(s)	1052, 1590
Hin1I	GRCGYC	1 cut(s)	209
Hin6I	GCGC	2 cut(s)	1050, 1588
HinP1I	GCGC	2 cut(s)	1050, 1588
HincII	GTYRAC	1 cut(s)	366
HindII	GTYRAC	1 cut(s)	366
HindIII	AAGCTT	1 cut(s)	1439
HinfI	GANTC	2 cut(s)	145, 583
HpaII	CCGG	2 cut(s)	1489, 1561
HphI	GGTGA	5 cut(s)	16, 112, 349, 1094, 1356
Hpy166II	GTNNAC	4 cut(s)	24, 366, 1130, 1315
Hpy188I	TCNGA	3 cut(s)	217, 834, 1457
Hpy188III	TCNNGA	1 cut(s)	790
Hpy8I	GTNNAC	4 cut(s)	24, 366, 1130, 1315
Hpy99I	CGWCG	1 cut(s)	214
HpyAV	CCTTC	8 cut(s)	68, 869, 895, 957, 1201, 1300, 1402, 1605
HpyCH4III	ACNGT	4 cut(s)	1127, 1433, 1523, 1583
HpyCH4IV	ACGT	1 cut(s)	1132
HpyF10VI	GCNNNNNNNGC	5 cut(s)	275, 548, 751, 770, 845
HpyF3I	CTNAG	5 cut(s)	113, 279, 351, 842, 924
HpySE526I	ACGT	1 cut(s)	1132
Hsp92I	GRCGYC	1 cut(s)	209
HspAI	GCGC	2 cut(s)	1050, 1588
KpnI	GGTACC	1 cut(s)	1429
Ksp22I	TGATCA	1 cut(s)	568
Kzo9I	GATC	1 cut(s)	568
LmnI	GCTCC	1 cut(s)	560
Lsp1109I	GCAGC	5 cut(s)	118, 121, 287, 529, 1037
LweI	GCATC	7 cut(s)	256, 361, 477, 610, 760, 783, 1311
MaeI	CTAG	2 cut(s)	197, 1020
MaeII	ACGT	1 cut(s)	1132
MaeIII	GTNAC	2 cut(s)	1133, 1290
MalI	GATC	1 cut(s)	570
MboI	GATC	1 cut(s)	568
MboII	GAAGA	6 cut(s)	131, 511, 613, 778, 992, 1510
MfeI	CAATTG	2 cut(s)	1011, 1446
MhlI	GDGCHC	5 cut(s)	129, 565, 856, 936, 1042
MmeI	TCCRAC	1 cut(s)	209
Mph1103I	ATGCAT	1 cut(s)	775
MroXI	GAANNNNTTC	1 cut(s)	1615
MseI	TTAA	3 cut(s)	309, 597, 1464
MslI	CAYNNNNRTG	2 cut(s)	93, 1068
MspA1I	CMGCKG	1 cut(s)	1028
MspI	CCGG	2 cut(s)	1489, 1561
MspR9I	CCNGG	5 cut(s)	10, 1233, 1476, 1490, 1562
MunI	CAATTG	2 cut(s)	1011, 1446
Mva1269I	GAATGC	4 cut(s)	238, 334, 733, 841
MvaI	CCWGG	3 cut(s)	10, 1233, 1476
MwoI	GCNNNNNNNGC	5 cut(s)	275, 548, 751, 770, 845
NciI	CCSGG	2 cut(s)	1490, 1562
NdeII	GATC	1 cut(s)	568
NlaIV	GGNNCC	5 cut(s)	813, 1039, 1116, 1427, 1580
NmeAIII	GCCGAG	2 cut(s)	185, 785
NmuCI	GTSAC	1 cut(s)	1290
NsiI	ATGCAT	1 cut(s)	775
NspI	RCATGY	2 cut(s)	98, 304
PceI	AGGCCT	2 cut(s)	13, 47
PciI	ACATGT	1 cut(s)	94
PctI	GAATGC	4 cut(s)	238, 334, 733, 841
PdmI	GAANNNNTTC	1 cut(s)	1615
PfeI	GAWTC	2 cut(s)	145, 583
PfoI	TCCNGGA	1 cut(s)	1231
PkrI	GCNGC	5 cut(s)	108, 111, 277, 544, 1027
PscI	ACATGT	1 cut(s)	94
PsiI	TTATAA	1 cut(s)	998
Psp6I	CCWGG	3 cut(s)	8, 1231, 1474
PspFI	CCCAGC	1 cut(s)	140
PspGI	CCWGG	3 cut(s)	8, 1231, 1474
PspN4I	GGNNCC	5 cut(s)	813, 1039, 1116, 1427, 1580
PspPI	GGNCC	1 cut(s)	1579
PstI	CTGCAG	1 cut(s)	53
PvuII	CAGCTG	1 cut(s)	1028
RsaI	GTAC	4 cut(s)	251, 1266, 1427, 1461
RsaNI	GTAC	4 cut(s)	250, 1265, 1426, 1460
RseI	CAYNNNNRTG	2 cut(s)	93, 1068
SaqAI	TTAA	3 cut(s)	309, 597, 1464
SatI	GCNGC	5 cut(s)	107, 110, 276, 543, 1026
Sau3AI	GATC	1 cut(s)	568
Sau96I	GGNCC	1 cut(s)	1579
ScaI	AGTACT	1 cut(s)	1461
ScrFI	CCNGG	5 cut(s)	10, 1233, 1476, 1490, 1562
SduI	GDGCHC	5 cut(s)	129, 565, 856, 936, 1042
SfaNI	GCATC	7 cut(s)	256, 361, 477, 610, 760, 783, 1311
SfcI	CTRYAG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	1579
SmiMI	CAYNNNNRTG	2 cut(s)	93, 1068
SmlI	CTYRAG	2 cut(s)	1377, 1504
SmoI	CTYRAG	2 cut(s)	1377, 1504
SseBI	AGGCCT	2 cut(s)	13, 47
SsiI	CCGC	3 cut(s)	380, 1118, 1423
SspMI	CTAG	2 cut(s)	197, 1020
StuI	AGGCCT	2 cut(s)	13, 47
StyD4I	CCNGG	5 cut(s)	8, 1231, 1474, 1488, 1560
StyI	CCWWGG	1 cut(s)	512
TaaI	ACNGT	4 cut(s)	1127, 1433, 1523, 1583
TaiI	ACGT	1 cut(s)	1135
TaqI	TCGA	2 cut(s)	530, 719
TatI	WGTACW	2 cut(s)	1264, 1459
TfiI	GAWTC	2 cut(s)	145, 583
Tru1I	TTAA	3 cut(s)	309, 597, 1464
Tru9I	TTAA	3 cut(s)	309, 597, 1464
TscAI	CASTG	4 cut(s)	72, 1132, 1425, 1438
TseFI	GTSAC	1 cut(s)	1290
TseI	GCWGC	5 cut(s)	106, 109, 275, 542, 1025
Tsp45I	GTSAC	1 cut(s)	1290
TspRI	CASTG	4 cut(s)	72, 1132, 1425, 1438
VpaK11BI	GGWCC	1 cut(s)	1579
XapI	RAATTY	5 cut(s)	4, 84, 518, 1000, 1271
XceI	RCATGY	2 cut(s)	98, 304
XmiI	GTMKAC	1 cut(s)	1314
XmnI	GAANNNNTTC	1 cut(s)	1615
XspI	CTAG	2 cut(s)	197, 1020
ZrmI	AGTACT	1 cut(s)	1461
Zsp2I	ATGCAT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.