Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005442.1

Orthogroup ID

OG0013694

Physical Location & Seq

Genomic Coordinates Reverse (-)

63897 .. 65384

Gene Structure 1488 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005442.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1488 bp

atgtatgcgtctttcgggcttgtggaggaggcaaggaggatattgctagacaactcggcgtcgtctgatgttgtttgttggaatgcaatgattgatgggtacatgaaatgtggggatgcagaagcagctaaggagttgtttgataagcacatgccaattaagaatgttgggtcttggaatgcaatggtgagtggttttgctaagtgtgggaggttgacagatgcaagggcggtgtttgatgaaatgattgagagagatgagatttcttggagtgctatgattgatggttatgtgcaaggagggtatcacaaggaggcattggaagttttcaatgagatgcaaaaggagaagattgttagtccaaggaaattcgtattgtcgagtgtgttagctgcttgtgccaatgtgggagcacttgatcaaggaaagtggattcatggttatattaagaagaactcaattcaggtggatgcactactggggactgctttggttgatatgtatgccaaatgtgggaggcttgacatggcatgggaagtgtttgaaaatgtgaaacagaaagaggtttcgacatggaatgccatgattggtgggcttgctatgcacggccgagcagatgatgcattggatgttttcttcaagatgcaagggaataatttggaaccaaatgggattacttttctgaatgctctaagtgcttgtgctcatgggggttttgttgatgaaggtcttacaattttcagttctatgaaggaaatgtatggtatggaggctgaggtagagcactatggttgtgtggttgatatgtttggaagggcaggacttttggaagaggcagagcaggttataaattcaatgccaattgaacctagtgcagctgtttatggtgccctgttaggcgcttgcaggatacatggaaatgttgaaatgggtgagagagtagggaggattttgcttgaattggaaccgcaaaacagtggacgttacgcattgttatctaacatctatgcaaaggcaggtatgtgggacgatgttgcagaggtaagaaaattgatgaaggaaaggggagtaaagactattcctggaattagcatggttgatattggtggcaaagtacatgaattcaaaatgggagatgggtcacacccacaaatgaaggaggtctacttgatgcttgaaaagattatagaaaagctggagacagagggttattcaccgaatacatctcaagttttgtttgacattgcagaggaggagaaggaaactgcactgcggtaccacagtgagaagcttgcaattgctttcggagtacttaacacaaaacctggaacaaccatccgggttgtgaagaacttgaggatttgtgaggactgtcattctgccataaagctcttttcacaatcatacaaccgggatataattgtgagggaccgtatgcgctatcatcattttagaaatggaaggtgttcgtgcaaggatttttggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

495

Amino Acids

55.3

Weight (kDa)

5.58

Isoelectric Point (pI)

33.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07610
malus_domestica	MD12G1204800.v1.1 MD13G1139300.v1.1 MD16G1136500.v1.1
prunus_persica	Prupe.1G105500_v2.0.a1 Prupe.6G312000_v2.0.a1
pyrus_communis	pycom12g19270 pycom13g12120 pycom16g12010
rosa_chinensis	RchiOBHm_Chr3g0457261
rosa_laevigata	RLG00000025238
rosa_multiflora	Rmu_co8517633.1_g000001 Rmu_sc0005442.1_g000015
rosa_roxburghii	Rroxscaffold_6G00422030
rosa_rugosa	Rorug03G0019600
rosa_samantha	Rh3BG081300 Rh3DG083300
rosa_wichuraiana	Rw3G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	848
Acc36I	ACCTGC	2 cut(s)	832, 1007
Acc65I	GGTACC	1 cut(s)	1275
AccB1I	GGYRCC	2 cut(s)	887, 1275
AccI	GTMKAC	1 cut(s)	1164
AciI	CCGC	3 cut(s)	230, 968, 1273
AcoI	YGGCCR	1 cut(s)	607
AcsI	RAATTY	3 cut(s)	368, 850, 1121
AcyI	GRCGYC	1 cut(s)	59
AfaI	GTAC	4 cut(s)	101, 1116, 1277, 1311
AfiI	CCNNNNNNNGG	1 cut(s)	513
AgsI	TTSAA	9 cut(s)	331, 545, 640, 855, 866, 926, 959, 1126, 1178
AjnI	CCWGG	2 cut(s)	1081, 1324
AluBI	AGCT	6 cut(s)	128, 392, 878, 1195, 1291, 1390
AluI	AGCT	6 cut(s)	128, 392, 878, 1195, 1291, 1390
Alw21I	GWGCWC	3 cut(s)	415, 706, 786
Alw26I	GTCTC	1 cut(s)	1193
AoxI	GGCC	1 cut(s)	607
ApeKI	GCWGC	3 cut(s)	125, 392, 875
ApoI	RAATTY	3 cut(s)	368, 850, 1121
Asp700I	GAANNNNTTC	1 cut(s)	1465
Asp718I	GGTACC	1 cut(s)	1275
AspLEI	GCGC	2 cut(s)	902, 1440
AspS9I	GGNCC	1 cut(s)	1429
AsuC2I	CCSGG	2 cut(s)	1340, 1412
AsuHPI	GGTGA	3 cut(s)	199, 944, 1206
AvaII	GGWCC	1 cut(s)	1429
BaeGI	GKGCMC	1 cut(s)	892
BaeI	ACNNNNGTAYC	4 cut(s)	1259, 1267, 1292, 1300
BanI	GGYRCC	2 cut(s)	887, 1275
BarI	GAAGNNNNNNTAC	2 cut(s)	1148, 1180
Bbv12I	GWGCWC	3 cut(s)	415, 706, 786
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	137, 379, 887
BccI	CCATC	4 cut(s)	89, 278, 1130, 1343
BceAI	ACGGC	1 cut(s)	622
BciT130I	CCWGG	2 cut(s)	1083, 1326
BciVI	GTATCC	1 cut(s)	903
BclI	TGATCA	1 cut(s)	418
BcnI	CCSGG	2 cut(s)	1340, 1412
BcoDI	GTCTC	1 cut(s)	1193
BfaI	CTAG	2 cut(s)	47, 870
BfoI	RGCGCY	1 cut(s)	903
BfuAI	ACCTGC	2 cut(s)	832, 1007
BfuI	GTATCC	1 cut(s)	903
BisI	GCNGC	3 cut(s)	126, 393, 876
BlsI	GCNGC	3 cut(s)	127, 394, 877
BmcAI	AGTACT	1 cut(s)	1311
Bme1390I	CCNGG	4 cut(s)	1083, 1326, 1340, 1412
Bme18I	GGWCC	1 cut(s)	1429
BmgT120I	GGNCC	1 cut(s)	1429
BmiI	GGNNCC	5 cut(s)	663, 889, 966, 1277, 1430
BmrFI	CCNGG	4 cut(s)	1083, 1326, 1340, 1412
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	7 cut(s)	106, 211, 327, 460, 610, 633, 1161
BmuI	ACTGGG	1 cut(s)	488
BpmI	CTGGAG	1 cut(s)	1217
Bpu10I	CCTNAGC	2 cut(s)	129, 774
BpuEI	CTTGAG	2 cut(s)	1212, 1375
BpuMI	CCSGG	2 cut(s)	1340, 1412
BsaHI	GRCGYC	1 cut(s)	59
BsaJI	CCNNGG	1 cut(s)	362
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	483
Bse3DI	GCAATG	3 cut(s)	93, 189, 1242
BseBI	CCWGG	2 cut(s)	1083, 1326
BseDI	CCNNGG	1 cut(s)	362
BseGI	GGATG	4 cut(s)	121, 475, 634, 1335
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	3 cut(s)	93, 189, 1242
BseMII	CTCAG	1 cut(s)	765
BseNI	ACTGG	1 cut(s)	483
BseRI	GAGGAG	3 cut(s)	41, 1265, 1268
BseSI	GKGCMC	1 cut(s)	892
BseX3I	CGGCCG	1 cut(s)	607
BseXI	GCAGC	3 cut(s)	137, 379, 887
BsgI	GTGCAG	2 cut(s)	894, 1251
Bsh1285I	CGRYCG	1 cut(s)	610
BshFI	GGCC	1 cut(s)	609
BshNI	GGYRCC	2 cut(s)	887, 1275
BsiEI	CGRYCG	1 cut(s)	610
BsiHKAI	GWGCWC	3 cut(s)	415, 706, 786
BsiSI	CCGG	2 cut(s)	1339, 1411
BslFI	GGGAC	3 cut(s)	496, 1040, 1442
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	1193
BsmFI	GGGAC	3 cut(s)	496, 1040, 1442
BsmI	GAATGC	4 cut(s)	88, 184, 583, 691
BsnI	GGCC	1 cut(s)	609
Bsp1286I	GDGCHC	4 cut(s)	415, 706, 786, 892
Bsp143I	GATC	1 cut(s)	418
BspACI	CCGC	3 cut(s)	230, 968, 1273
BspANI	GGCC	1 cut(s)	609
BspCNI	CTCAG	1 cut(s)	766
BspLI	GGNNCC	5 cut(s)	663, 889, 966, 1277, 1430
BspMI	ACCTGC	2 cut(s)	832, 1007
BspT107I	GGYRCC	2 cut(s)	887, 1275
BsrDI	GCAATG	3 cut(s)	93, 189, 1242
BsrI	ACTGG	1 cut(s)	483
BssECI	CCNNGG	1 cut(s)	362
BssMI	GATC	1 cut(s)	418
BssNI	GRCGYC	1 cut(s)	59
BssT1I	CCWWGG	1 cut(s)	362
Bst2UI	CCWGG	2 cut(s)	1083, 1326
Bst4CI	ACNGT	4 cut(s)	977, 1283, 1373, 1433
Bst6I	CTCTTC	1 cut(s)	825
BstACI	GRCGYC	1 cut(s)	59
BstAPI	GCANNNNNTGC	1 cut(s)	620
BstC8I	GCNNGC	3 cut(s)	597, 904, 1293
BstDEI	CTNAG	4 cut(s)	129, 201, 692, 774
BstF5I	GGATG	4 cut(s)	121, 475, 634, 1335
BstH2I	RGCGCY	1 cut(s)	903
BstHHI	GCGC	2 cut(s)	902, 1440
BstKTI	GATC	1 cut(s)	421
BstMAI	GTCTC	1 cut(s)	1193
BstMBI	GATC	1 cut(s)	418
BstMCI	CGRYCG	1 cut(s)	610
BstMWI	GCNNNNNNNGC	5 cut(s)	125, 398, 601, 620, 695
BstNI	CCWGG	2 cut(s)	1083, 1326
BstNSI	RCATGY	1 cut(s)	154
BstSCI	CCNGG	4 cut(s)	1081, 1324, 1338, 1410
BstSLI	GKGCMC	1 cut(s)	892
BstV1I	GCAGC	3 cut(s)	137, 379, 887
BstZI	CGGCCG	1 cut(s)	607
BsuI	GTATCC	1 cut(s)	903
BsuRI	GGCC	1 cut(s)	609
BtsCI	GGATG	4 cut(s)	121, 475, 634, 1335
BtsI	GCAGTG	1 cut(s)	1268
BtsIMutI	CAGTG	3 cut(s)	982, 1268, 1288
BveI	ACCTGC	2 cut(s)	832, 1007
Cac8I	GCNNGC	3 cut(s)	597, 904, 1293
CfoI	GCGC	2 cut(s)	902, 1440
Cfr13I	GGNCC	1 cut(s)	1429
CseI	GACGC	1 cut(s)	48
Csp6I	GTAC	4 cut(s)	100, 1115, 1276, 1310
CspCI	CAANNNNNGTGG	4 cut(s)	410, 445, 447, 482
CviQI	GTAC	4 cut(s)	100, 1115, 1276, 1310
DdeI	CTNAG	4 cut(s)	129, 201, 692, 774
DpnI	GATC	1 cut(s)	420
DpnII	GATC	1 cut(s)	418
EaeI	YGGCCR	1 cut(s)	607
EagI	CGGCCG	1 cut(s)	607
Eam1104I	CTCTTC	1 cut(s)	825
EarI	CTCTTC	1 cut(s)	825
EclXI	CGGCCG	1 cut(s)	607
Eco130I	CCWWGG	1 cut(s)	362
Eco47I	GGWCC	1 cut(s)	1429
Eco52I	CGGCCG	1 cut(s)	607
EcoRI	GAATTC	1 cut(s)	1121
EcoRII	CCWGG	2 cut(s)	1081, 1324
EcoT14I	CCWWGG	1 cut(s)	362
EcoT22I	ATGCAT	1 cut(s)	625
ErhI	CCWWGG	1 cut(s)	362
FaqI	GGGAC	3 cut(s)	496, 1040, 1442
FbaI	TGATCA	1 cut(s)	418
FblI	GTMKAC	1 cut(s)	1164
Fnu4HI	GCNGC	3 cut(s)	126, 393, 876
FokI	GGATG	4 cut(s)	128, 482, 641, 1322
Fsp4HI	GCNGC	3 cut(s)	126, 393, 876
FspBI	CTAG	2 cut(s)	47, 870
GlaI	GCGC	2 cut(s)	901, 1439
GluI	GCNGC	3 cut(s)	126, 393, 876
GsuI	CTGGAG	1 cut(s)	1217
HaeII	RGCGCY	1 cut(s)	903
HaeIII	GGCC	1 cut(s)	609
HapII	CCGG	2 cut(s)	1339, 1411
HgaI	GACGC	1 cut(s)	48
HhaI	GCGC	2 cut(s)	902, 1440
Hin1I	GRCGYC	1 cut(s)	59
Hin6I	GCGC	2 cut(s)	900, 1438
HinP1I	GCGC	2 cut(s)	900, 1438
HincII	GTYRAC	1 cut(s)	216
HindII	GTYRAC	1 cut(s)	216
HindIII	AAGCTT	1 cut(s)	1289
HinfI	GANTC	1 cut(s)	433
HpaII	CCGG	2 cut(s)	1339, 1411
HphI	GGTGA	3 cut(s)	199, 944, 1206
Hpy166II	GTNNAC	3 cut(s)	216, 980, 1165
Hpy188I	TCNGA	3 cut(s)	67, 684, 1307
Hpy188III	TCNNGA	1 cut(s)	640
Hpy8I	GTNNAC	3 cut(s)	216, 980, 1165
Hpy99I	CGWCG	1 cut(s)	64
HpyAV	CCTTC	7 cut(s)	719, 745, 807, 1051, 1150, 1252, 1455
HpyCH4III	ACNGT	4 cut(s)	977, 1283, 1373, 1433
HpyCH4IV	ACGT	1 cut(s)	982
HpyF10VI	GCNNNNNNNGC	5 cut(s)	125, 398, 601, 620, 695
HpyF3I	CTNAG	4 cut(s)	129, 201, 692, 774
HpySE526I	ACGT	1 cut(s)	982
Hsp92I	GRCGYC	1 cut(s)	59
HspAI	GCGC	2 cut(s)	900, 1438
KpnI	GGTACC	1 cut(s)	1279
Ksp22I	TGATCA	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	418
LmnI	GCTCC	1 cut(s)	410
Lsp1109I	GCAGC	3 cut(s)	137, 379, 887
LweI	GCATC	7 cut(s)	106, 211, 327, 460, 610, 633, 1161
MaeI	CTAG	2 cut(s)	47, 870
MaeII	ACGT	1 cut(s)	982
MaeIII	GTNAC	2 cut(s)	983, 1140
MalI	GATC	1 cut(s)	420
MboI	GATC	1 cut(s)	418
MboII	GAAGA	5 cut(s)	361, 463, 628, 842, 1360
MfeI	CAATTG	2 cut(s)	861, 1296
MhlI	GDGCHC	4 cut(s)	415, 706, 786, 892
MmeI	TCCRAC	1 cut(s)	59
Mph1103I	ATGCAT	1 cut(s)	625
MroXI	GAANNNNTTC	1 cut(s)	1465
MseI	TTAA	3 cut(s)	159, 447, 1314
MslI	CAYNNNNRTG	1 cut(s)	918
MspA1I	CMGCKG	1 cut(s)	878
MspI	CCGG	2 cut(s)	1339, 1411
MspR9I	CCNGG	4 cut(s)	1083, 1326, 1340, 1412
MunI	CAATTG	2 cut(s)	861, 1296
Mva1269I	GAATGC	4 cut(s)	88, 184, 583, 691
MvaI	CCWGG	2 cut(s)	1083, 1326
MwoI	GCNNNNNNNGC	5 cut(s)	125, 398, 601, 620, 695
NciI	CCSGG	2 cut(s)	1340, 1412
NdeII	GATC	1 cut(s)	418
NlaIV	GGNNCC	5 cut(s)	663, 889, 966, 1277, 1430
NmeAIII	GCCGAG	2 cut(s)	35, 635
NmuCI	GTSAC	1 cut(s)	1140
NsiI	ATGCAT	1 cut(s)	625
NspI	RCATGY	1 cut(s)	154
PctI	GAATGC	4 cut(s)	88, 184, 583, 691
PdmI	GAANNNNTTC	1 cut(s)	1465
PfeI	GAWTC	1 cut(s)	433
PfoI	TCCNGGA	1 cut(s)	1081
PkrI	GCNGC	3 cut(s)	127, 394, 877
PsiI	TTATAA	1 cut(s)	848
Psp6I	CCWGG	2 cut(s)	1081, 1324
PspGI	CCWGG	2 cut(s)	1081, 1324
PspN4I	GGNNCC	5 cut(s)	663, 889, 966, 1277, 1430
PspPI	GGNCC	1 cut(s)	1429
PvuII	CAGCTG	1 cut(s)	878
RsaI	GTAC	4 cut(s)	101, 1116, 1277, 1311
RsaNI	GTAC	4 cut(s)	100, 1115, 1276, 1310
RseI	CAYNNNNRTG	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	159, 447, 1314
SatI	GCNGC	3 cut(s)	126, 393, 876
Sau3AI	GATC	1 cut(s)	418
Sau96I	GGNCC	1 cut(s)	1429
ScaI	AGTACT	1 cut(s)	1311
ScrFI	CCNGG	4 cut(s)	1083, 1326, 1340, 1412
SduI	GDGCHC	4 cut(s)	415, 706, 786, 892
SfaNI	GCATC	7 cut(s)	106, 211, 327, 460, 610, 633, 1161
SinI	GGWCC	1 cut(s)	1429
SmiMI	CAYNNNNRTG	1 cut(s)	918
SmlI	CTYRAG	2 cut(s)	1227, 1354
SmoI	CTYRAG	2 cut(s)	1227, 1354
SsiI	CCGC	3 cut(s)	230, 968, 1273
SspMI	CTAG	2 cut(s)	47, 870
StyD4I	CCNGG	4 cut(s)	1081, 1324, 1338, 1410
StyI	CCWWGG	1 cut(s)	362
TaaI	ACNGT	4 cut(s)	977, 1283, 1373, 1433
TaiI	ACGT	1 cut(s)	985
TaqI	TCGA	2 cut(s)	380, 569
TatI	WGTACW	2 cut(s)	1114, 1309
TfiI	GAWTC	1 cut(s)	433
Tru1I	TTAA	3 cut(s)	159, 447, 1314
Tru9I	TTAA	3 cut(s)	159, 447, 1314
TscAI	CASTG	3 cut(s)	982, 1275, 1288
TseFI	GTSAC	1 cut(s)	1140
TseI	GCWGC	3 cut(s)	125, 392, 875
Tsp45I	GTSAC	1 cut(s)	1140
TspDTI	ATGAA	8 cut(s)	119, 255, 425, 738, 764, 1070, 1134, 1169
TspRI	CASTG	3 cut(s)	982, 1275, 1288
VpaK11BI	GGWCC	1 cut(s)	1429
XapI	RAATTY	3 cut(s)	368, 850, 1121
XceI	RCATGY	1 cut(s)	154
XmiI	GTMKAC	1 cut(s)	1164
XmnI	GAANNNNTTC	1 cut(s)	1465
XspI	CTAG	2 cut(s)	47, 870
ZrmI	AGTACT	1 cut(s)	1311
Zsp2I	ATGCAT	1 cut(s)	625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.