Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013694

Physical Location & Seq

Genomic Coordinates Reverse (-)

8381848 .. 8382865

Gene Structure 1018 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g12120.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGACTTCGCTCCTAGTACATCAACACACCCCACCCTCCCTAAGCTCGCCTGGAATCCACATTTCACCGTTACGCCGCCTTGAATCATGCTCGACCATGGTGGAGCTCAAGCAGTTGCACTCCCAAATCATCAGGCTCGGCCTCGCTGCCGACAACGACGCCATGGGACGTGTCATCAAGTTTTGCGCCCTCTCCAAAAACGGCGATTTGGGTTATGCCCTCCAGGTGTTCGACACAATGCTTCAATCCGGATGCATTCATTTACAACACTGTAATGAGAGGCTACTTGCAATGCCAATTGACTCTGTCCCTCCCAATCGGTACACGTTCCCTTCCATTGTGCGAGCTTGTTGCGCTGATGGTGCTGTTGGAGAAGGGAAGCAAGTCTATGCCCATGCCGTCAAACTCGAGTTTGGAGATGATGGGTTTTGTCAGAACAATTTGATTCACATGTATGTGAAGTTTCAGTCTTTGGAGGAAGCTAGAAGGGTGTTTGACAAGATGCCCCAGGCGGATGTTGTGTCTTGGACGACTTTGATTACTGGGTACTCCCAATGTGGCTTCATTGATGAGGCTTTTGAAATTTTCGAGTTGATGCCTGAGAAGAATTCTGTTTCTTGGAATGCCATGATTTCCTCTTATGTCCAGAGTAATCGTTTTCACGAGGCATTTGCTTTGTTCCAAAGAATGCGAGTGGAAAATGTAGAATTGGATAAATTCATGGCAGCTAGTATGCTATCGGCTTGTACAGGTTTAGGTGCTCTAGAACAAGGGAAGTGGATACATGGATATATTGAGAAAAGCGGGATTGAATTGGACTCGAAACTTGCAACAATGATCATTGACATGTACTGCAAATGTGGTTGCCTGGAGAAGGTTTTTGAAGTTTTTAACGGGTTGCCACATAAAGGGATTTCTTCATGGAATTGCATGATTGGTGGGCTAGCAATGCATGGGAAGGGAGAGGGCCACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

326

Amino Acids

36.18

Weight (kDa)

6.15

Isoelectric Point (pI)

49.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013694)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g07610
malus_domestica	MD12G1204800.v1.1 MD13G1139300.v1.1 MD16G1136500.v1.1
prunus_persica	Prupe.1G105500_v2.0.a1 Prupe.6G312000_v2.0.a1
pyrus_communis	pycom12g19270 pycom13g12120 pycom16g12010
rosa_chinensis	RchiOBHm_Chr3g0457261
rosa_laevigata	RLG00000025238
rosa_multiflora	Rmu_co8517633.1_g000001 Rmu_sc0005442.1_g000015
rosa_roxburghii	Rroxscaffold_6G00422030
rosa_rugosa	Rorug03G0019600
rosa_samantha	Rh3BG081300 Rh3DG083300
rosa_wichuraiana	Rw3G006860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	248
AciI	CCGC	3 cut(s)	76, 512, 804
AcsI	RAATTY	3 cut(s)	582, 607, 716
AcyI	GRCGYC	1 cut(s)	159
AfaI	GTAC	5 cut(s)	18, 323, 548, 748, 851
AfiI	CCNNNNNNNGG	2 cut(s)	874, 908
AflIII	ACRYGT	4 cut(s)	169, 324, 450, 846
AgsI	TTSAA	5 cut(s)	83, 245, 581, 812, 884
AjiI	CACGTC	1 cut(s)	170
AjnI	CCWGG	4 cut(s)	49, 222, 507, 867
AluBI	AGCT	5 cut(s)	45, 106, 347, 482, 728
AluI	AGCT	5 cut(s)	45, 106, 347, 482, 728
Alw21I	GWGCWC	2 cut(s)	108, 763
Ama87I	CYCGRG	1 cut(s)	407
Aor13HI	TCCGGA	1 cut(s)	248
AoxI	GGCC	2 cut(s)	139, 967
ApeKI	GCWGC	2 cut(s)	146, 725
ApoI	RAATTY	3 cut(s)	582, 607, 716
AspLEI	GCGC	2 cut(s)	188, 356
AspS9I	GGNCC	1 cut(s)	967
AsuHPI	GGTGA	1 cut(s)	57
AsuNHI	GCTAGC	1 cut(s)	943
AvaI	CYCGRG	1 cut(s)	407
BanII	GRGCYC	1 cut(s)	108
BauI	CACGAG	1 cut(s)	662
Bbv12I	GWGCWC	2 cut(s)	108, 763
BbvI	GCAGC	2 cut(s)	133, 737
BccI	CCATC	2 cut(s)	353, 416
BceAI	ACGGC	2 cut(s)	217, 383
BcgI	CGANNNNNNTGC	4 cut(s)	333, 367, 653, 687
BciT130I	CCWGG	4 cut(s)	51, 224, 509, 869
BciVI	GTATCC	1 cut(s)	774
BclI	TGATCA	1 cut(s)	837
BfaI	CTAG	5 cut(s)	14, 483, 729, 764, 944
BfuI	GTATCC	1 cut(s)	774
BisI	GCNGC	3 cut(s)	76, 147, 726
BlsI	GCNGC	3 cut(s)	77, 148, 727
Bme1390I	CCNGG	4 cut(s)	51, 224, 509, 869
BmeT110I	CYCGRG	1 cut(s)	407
BmgBI	CACGTC	1 cut(s)	170
BmgT120I	GGNCC	1 cut(s)	967
BmrFI	CCNGG	4 cut(s)	51, 224, 509, 869
BmrI	ACTGGG	1 cut(s)	552
BmsI	GCATC	3 cut(s)	242, 492, 585
BmtI	GCTAGC	1 cut(s)	947
BmuI	ACTGGG	1 cut(s)	552
BpmI	CTGGAG	2 cut(s)	206, 890
Bpu10I	CCTNAGC	1 cut(s)	41
BpuEI	CTTGAG	1 cut(s)	92
BsaHI	GRCGYC	1 cut(s)	159
BsaJI	CCNNGG	3 cut(s)	96, 162, 507
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	2 cut(s)	874, 908
Bse1I	ACTGG	1 cut(s)	547
Bse3DI	GCAATG	2 cut(s)	297, 954
BseAI	TCCGGA	1 cut(s)	248
BseBI	CCWGG	4 cut(s)	51, 224, 509, 869
BseDI	CCNNGG	3 cut(s)	96, 162, 507
BseGI	GGATG	2 cut(s)	257, 520
BseLI	CCNNNNNNNGG	2 cut(s)	874, 908
BseMI	GCAATG	2 cut(s)	297, 954
BseMII	CTCAG	1 cut(s)	591
BseNI	ACTGG	1 cut(s)	547
BseXI	GCAGC	2 cut(s)	133, 737
BshFI	GGCC	2 cut(s)	141, 969
BsiHKAI	GWGCWC	2 cut(s)	108, 763
BsiHKCI	CYCGRG	1 cut(s)	407
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	2 cut(s)	180, 293
BslI	CCNNNNNNNGG	2 cut(s)	874, 908
BsmFI	GGGAC	2 cut(s)	180, 293
BsmI	GAATGC	3 cut(s)	255, 628, 693
BsnI	GGCC	2 cut(s)	141, 969
BsoBI	CYCGRG	1 cut(s)	407
Bsp1286I	GDGCHC	2 cut(s)	108, 763
Bsp13I	TCCGGA	1 cut(s)	248
Bsp1407I	TGTACA	1 cut(s)	746
Bsp143I	GATC	1 cut(s)	837
Bsp19I	CCATGG	2 cut(s)	96, 162
BspACI	CCGC	3 cut(s)	76, 512, 804
BspANI	GGCC	2 cut(s)	141, 969
BspCNI	CTCAG	1 cut(s)	592
BspEI	TCCGGA	1 cut(s)	248
BspOI	GCTAGC	1 cut(s)	947
BsrDI	GCAATG	2 cut(s)	297, 954
BsrGI	TGTACA	1 cut(s)	746
BsrI	ACTGG	1 cut(s)	547
BssECI	CCNNGG	3 cut(s)	96, 162, 507
BssMI	GATC	1 cut(s)	837
BssNI	GRCGYC	1 cut(s)	159
BssSI	CACGAG	1 cut(s)	662
BssT1I	CCWWGG	2 cut(s)	96, 162
Bst2BI	CACGAG	1 cut(s)	662
Bst2UI	CCWGG	4 cut(s)	51, 224, 509, 869
Bst4CI	ACNGT	2 cut(s)	69, 272
BstACI	GRCGYC	1 cut(s)	159
BstAUI	TGTACA	1 cut(s)	746
BstC8I	GCNNGC	3 cut(s)	47, 345, 945
BstDEI	CTNAG	2 cut(s)	41, 600
BstDSI	CCRYGG	2 cut(s)	96, 162
BstENI	CCTNNNNNAGG	1 cut(s)	872
BstF5I	GGATG	2 cut(s)	257, 520
BstHHI	GCGC	2 cut(s)	188, 356
BstKTI	GATC	1 cut(s)	840
BstMBI	GATC	1 cut(s)	837
BstMWI	GCNNNNNNNGC	3 cut(s)	353, 362, 949
BstNI	CCWGG	4 cut(s)	51, 224, 509, 869
BstNSI	RCATGY	2 cut(s)	454, 850
BstSCI	CCNGG	4 cut(s)	49, 222, 507, 867
BstV1I	GCAGC	2 cut(s)	133, 737
BsuI	GTATCC	1 cut(s)	774
BsuRI	GGCC	2 cut(s)	141, 969
BtgI	CCRYGG	2 cut(s)	96, 162
BtrI	CACGTC	1 cut(s)	170
BtsCI	GGATG	2 cut(s)	257, 520
BtsIMutI	CAGTG	1 cut(s)	268
Cac8I	GCNNGC	3 cut(s)	47, 345, 945
CfoI	GCGC	2 cut(s)	188, 356
Cfr13I	GGNCC	1 cut(s)	967
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	5 cut(s)	17, 322, 547, 747, 850
CspCI	CAANNNNNGTGG	2 cut(s)	758, 793
CviQI	GTAC	5 cut(s)	17, 322, 547, 747, 850
DdeI	CTNAG	2 cut(s)	41, 600
DpnI	GATC	1 cut(s)	839
DpnII	GATC	1 cut(s)	837
EciI	GGCGGA	1 cut(s)	527
Ecl136II	GAGCTC	1 cut(s)	106
Eco130I	CCWWGG	2 cut(s)	96, 162
Eco24I	GRGCYC	1 cut(s)	108
Eco53kI	GAGCTC	1 cut(s)	106
Eco88I	CYCGRG	1 cut(s)	407
EcoICRI	GAGCTC	1 cut(s)	106
EcoNI	CCTNNNNNAGG	1 cut(s)	872
EcoRI	GAATTC	1 cut(s)	607
EcoRII	CCWGG	4 cut(s)	49, 222, 507, 867
EcoT14I	CCWWGG	2 cut(s)	96, 162
EcoT22I	ATGCAT	2 cut(s)	257, 954
EcoT38I	GRGCYC	1 cut(s)	108
ErhI	CCWWGG	2 cut(s)	96, 162
FaqI	GGGAC	2 cut(s)	180, 293
FauI	CCCGC	1 cut(s)	797
FbaI	TGATCA	1 cut(s)	837
Fnu4HI	GCNGC	3 cut(s)	76, 147, 726
FokI	GGATG	2 cut(s)	264, 527
FriOI	GRGCYC	1 cut(s)	108
Fsp4HI	GCNGC	3 cut(s)	76, 147, 726
FspBI	CTAG	5 cut(s)	14, 483, 729, 764, 944
GlaI	GCGC	2 cut(s)	187, 355
GluI	GCNGC	3 cut(s)	76, 147, 726
GsuI	CTGGAG	2 cut(s)	206, 890
HaeIII	GGCC	2 cut(s)	141, 969
HapII	CCGG	1 cut(s)	249
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	2 cut(s)	188, 356
Hin1I	GRCGYC	1 cut(s)	159
Hin6I	GCGC	2 cut(s)	186, 354
HinP1I	GCGC	2 cut(s)	186, 354
HinfI	GANTC	5 cut(s)	54, 83, 302, 445, 818
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	57
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	1 cut(s)	435
Hpy188III	TCNNGA	4 cut(s)	249, 646, 662, 764
Hpy8I	GTNNAC	1 cut(s)	324
Hpy99I	CGWCG	1 cut(s)	161
HpyAV	CCTTC	5 cut(s)	342, 368, 480, 868, 952
HpyCH4III	ACNGT	2 cut(s)	69, 272
HpyCH4IV	ACGT	2 cut(s)	169, 326
HpyCH4V	TGCA	7 cut(s)	118, 255, 290, 830, 855, 930, 952
HpyF10VI	GCNNNNNNNGC	3 cut(s)	353, 362, 949
HpyF3I	CTNAG	2 cut(s)	41, 600
HpySE526I	ACGT	2 cut(s)	169, 326
Hsp92I	GRCGYC	1 cut(s)	159
HspAI	GCGC	2 cut(s)	186, 354
Kpn2I	TCCGGA	1 cut(s)	248
Ksp22I	TGATCA	1 cut(s)	837
Kzo9I	GATC	1 cut(s)	837
LmnI	GCTCC	2 cut(s)	15, 103
Lsp1109I	GCAGC	2 cut(s)	133, 737
LweI	GCATC	3 cut(s)	242, 492, 585
MaeI	CTAG	5 cut(s)	14, 483, 729, 764, 944
MaeII	ACGT	2 cut(s)	169, 326
MaeIII	GTNAC	1 cut(s)	69
MalI	GATC	1 cut(s)	839
MboI	GATC	1 cut(s)	837
MboII	GAAGA	2 cut(s)	616, 909
MfeI	CAATTG	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	108, 763
MluCI	AATT	8 cut(s)	297, 439, 582, 607, 707, 716, 812, 925
MlyI	GAGTC	2 cut(s)	296, 812
MmeI	TCCRAC	1 cut(s)	349
Mph1103I	ATGCAT	2 cut(s)	257, 954
MroI	TCCGGA	1 cut(s)	248
MseI	TTAA	1 cut(s)	891
MslI	CAYNNNNRTG	4 cut(s)	273, 453, 455, 845
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	4 cut(s)	51, 224, 509, 869
MunI	CAATTG	1 cut(s)	297
Mva1269I	GAATGC	3 cut(s)	255, 628, 693
MvaI	CCWGG	4 cut(s)	51, 224, 509, 869
MwoI	GCNNNNNNNGC	3 cut(s)	353, 362, 949
NcoI	CCATGG	2 cut(s)	96, 162
NdeII	GATC	1 cut(s)	837
NheI	GCTAGC	1 cut(s)	943
NmeAIII	GCCGAG	1 cut(s)	117
NsiI	ATGCAT	2 cut(s)	257, 954
NspI	RCATGY	2 cut(s)	454, 850
PaeR7I	CTCGAG	1 cut(s)	407
PciI	ACATGT	2 cut(s)	450, 846
PctI	GAATGC	3 cut(s)	255, 628, 693
PfeI	GAWTC	3 cut(s)	54, 83, 445
PflFI	GACNNNGTC	1 cut(s)	305
PkrI	GCNGC	3 cut(s)	77, 148, 727
PleI	GAGTC	2 cut(s)	296, 812
PpsI	GAGTC	2 cut(s)	296, 812
PscI	ACATGT	2 cut(s)	450, 846
Psp124BI	GAGCTC	1 cut(s)	108
Psp6I	CCWGG	4 cut(s)	49, 222, 507, 867
PspGI	CCWGG	4 cut(s)	49, 222, 507, 867
PspPI	GGNCC	1 cut(s)	967
PspXI	VCTCGAGB	1 cut(s)	407
PsyI	GACNNNGTC	1 cut(s)	305
RsaI	GTAC	5 cut(s)	18, 323, 548, 748, 851
RsaNI	GTAC	5 cut(s)	17, 322, 547, 747, 850
RseI	CAYNNNNRTG	4 cut(s)	273, 453, 455, 845
SacI	GAGCTC	1 cut(s)	108
SaqAI	TTAA	1 cut(s)	891
SatI	GCNGC	3 cut(s)	76, 147, 726
Sau3AI	GATC	1 cut(s)	837
Sau96I	GGNCC	1 cut(s)	967
SchI	GAGTC	2 cut(s)	296, 812
ScrFI	CCNGG	4 cut(s)	51, 224, 509, 869
SduI	GDGCHC	2 cut(s)	108, 763
SfaNI	GCATC	3 cut(s)	242, 492, 585
Sfr274I	CTCGAG	1 cut(s)	407
SlaI	CTCGAG	1 cut(s)	407
SmiMI	CAYNNNNRTG	4 cut(s)	273, 453, 455, 845
SmlI	CTYRAG	2 cut(s)	107, 407
SmoI	CTYRAG	2 cut(s)	107, 407
Sse9I	AATT	8 cut(s)	297, 439, 582, 607, 707, 716, 812, 925
SsiI	CCGC	3 cut(s)	76, 512, 804
SspMI	CTAG	5 cut(s)	14, 483, 729, 764, 944
SstI	GAGCTC	1 cut(s)	108
StyD4I	CCNGG	4 cut(s)	49, 222, 507, 867
StyI	CCWWGG	2 cut(s)	96, 162
TaaI	ACNGT	2 cut(s)	69, 272
TaiI	ACGT	2 cut(s)	172, 329
TaqI	TCGA	5 cut(s)	92, 231, 408, 588, 821
TasI	AATT	8 cut(s)	297, 439, 582, 607, 707, 716, 812, 925
TatI	WGTACW	3 cut(s)	16, 746, 849
TauI	GCSGC	1 cut(s)	78
TfiI	GAWTC	3 cut(s)	54, 83, 445
Tru1I	TTAA	1 cut(s)	891
Tru9I	TTAA	1 cut(s)	891
TscAI	CASTG	1 cut(s)	275
TseI	GCWGC	2 cut(s)	146, 725
TspDTI	ATGAA	4 cut(s)	248, 553, 709, 909
TspRI	CASTG	1 cut(s)	275
Tth111I	GACNNNGTC	1 cut(s)	305
XagI	CCTNNNNNAGG	1 cut(s)	872
XapI	RAATTY	3 cut(s)	582, 607, 716
XbaI	TCTAGA	1 cut(s)	763
XceI	RCATGY	2 cut(s)	454, 850
XhoI	CTCGAG	1 cut(s)	407
XspI	CTAG	5 cut(s)	14, 483, 729, 764, 944
Zsp2I	ATGCAT	2 cut(s)	257, 954

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.