Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005781

Physical Location & Seq

Genomic Coordinates Reverse (-)

24238592 .. 24241074

Gene Structure 2483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 786 bp

ATGGCTCAGCTCTTGAAAGTAGCCGCTATCCCTTTCCCTCTAAGTCTAAGACGCAACGGCTGCAGGACAAGCTCACCTCGATTTCACAGAGCTACAACACTGGCTCTTACAACCCATGACGCCCACAACACCACCAAGCGCTCCTCCTTTCATAGTACCAATACTCGAAGGCTTCCTATAATCCTCTTCGACATCATGGACACAGTTGTTCGTGACCCCTTTTACCACGATGTCCCTGCCTTCTTCAGAATGTCTTTCGAAGAATTGATCGAAAGCAAGCACCCGACTGCATGGATTGAGTTCGAAAAGGGTATAACTGATGAGATGGAGCTAGCAAGAACATTCTTTAAGGATGGAAGGCCTATAGATTTGGAAGGCCTGAAAAATTGCATGAAGAAAGGATACTCCTATGTTGAAGGTGTTGAAGAATTGCTTGATGTGTTAAAACATAACAACTACGAGATGCATGCTTTCACAAACTATCCGATCTGGTATGAGATGATTGAGGACAAATTAAACATATCAAAATATTTATCTTGGACGTTTTGTTCATGTATAACTGGGAAGAGGAAGCCCGATCCTGAATTCTATTTGGAGGTTGTGAGACATCTGGAAGTTGATCCGGGAAGCTGTATCTTCGTTGATGACAGGATGAGAAATGTAGAGGCCGCGAAGGAAGTAGGCATCGTCGGTCTACATTTCAAAAATGCAGATTCGCTTCGTCAAGATCTTTTATCGATGGGGATTGACATTTCAACGAAACAAACCAATCTTCAACAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0042578 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043621 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0090711

KEGG Pathways

Metabolic & Signaling

ko00740 ko01100 ko01110 map00740 map01100 map01110

Pfam Domains

Protein Families

HAD_2

Protein Analysis

262

Amino Acids

30.29

Weight (kDa)

6.22

Isoelectric Point (pI)

47.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HAD_2	PF13419	128 - 229	1.3e-11	Haloacid dehalogenase-like hydrolase
Hydrolase	PF00702	137 - 228	7.8e-14	haloacid dehalogenase-like hydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005781)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79790 AT1G79790 AT1G79790
fragaria_vesca	FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710 FvH4_6g00710
malus_domestica	MD04G1242100.v1.1 MD12G1258900.v1.1
prunus_persica	Prupe.6G359400_v2.0.a1 Prupe.6G359400_v2.0.a1
pyrus_communis	pycom04g21350 pycom12g23740
rosa_chinensis	RchiOBHm_Chr3g0448181
rosa_laevigata	RLG00000025940
rosa_multiflora	Rmu_sc0013667.1_g000005
rosa_roxburghii	Rroxscaffold_6G00426320
rosa_rugosa	Rorug02G0608500
rosa_samantha	Rh3AG008600 Rh3BG008100 Rh3CG008200 Rh3DG008800
rosa_wichuraiana	Rw3G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	694
AccII	CGCG	1 cut(s)	671
AciI	CCGC	2 cut(s)	24, 669
AclWI	GGATC	2 cut(s)	572, 614
AcsI	RAATTY	1 cut(s)	584
AcuI	CTGAAG	1 cut(s)	229
AcyI	GRCGYC	1 cut(s)	120
AfaI	GTAC	1 cut(s)	157
AfeI	AGCGCT	1 cut(s)	140
AgsI	TTSAA	6 cut(s)	16, 416, 425, 703, 756, 776
AloI	GAACNNNNNNTCC	2 cut(s)	532, 564
AluBI	AGCT	5 cut(s)	10, 72, 92, 331, 630
AluI	AGCT	5 cut(s)	10, 72, 92, 331, 630
Alw26I	GTCTC	1 cut(s)	598
AlwI	GGATC	2 cut(s)	572, 614
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	3 cut(s)	359, 376, 666
ApeKI	GCWGC	1 cut(s)	60
ApoI	RAATTY	1 cut(s)	584
AspLEI	GCGC	1 cut(s)	141
AsuC2I	CCSGG	1 cut(s)	624
AsuHPI	GGTGA	1 cut(s)	66
AsuII	TTCGAA	2 cut(s)	258, 303
AsuNHI	GCTAGC	1 cut(s)	331
BarI	GAAGNNNNNNTAC	2 cut(s)	386, 418
BbvI	GCAGC	1 cut(s)	47
BccI	CCATC	3 cut(s)	319, 347, 733
BceAI	ACGGC	1 cut(s)	73
BcgI	CGANNNNNNTGC	4 cut(s)	218, 252, 449, 483
BciVI	GTATCC	1 cut(s)	395
BcnI	CCSGG	1 cut(s)	624
BcoDI	GTCTC	1 cut(s)	598
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	61, 363
BfoI	RGCGCY	1 cut(s)	142
BfuI	GTATCC	1 cut(s)	395
BglII	AGATCT	1 cut(s)	727
BisI	GCNGC	3 cut(s)	24, 61, 669
BlpI	GCTNAGC	1 cut(s)	6
BlsI	GCNGC	3 cut(s)	25, 62, 670
Bme1390I	CCNGG	1 cut(s)	624
BmrFI	CCNGG	1 cut(s)	624
BmrI	ACTGGG	1 cut(s)	570
BmsI	GCATC	2 cut(s)	453, 693
BmtI	GCTAGC	1 cut(s)	335
BmuI	ACTGGG	1 cut(s)	570
Bpu1102I	GCTNAGC	1 cut(s)	6
Bpu14I	TTCGAA	2 cut(s)	258, 303
BpuMI	CCSGG	1 cut(s)	624
Bsa29I	ATCGAT	1 cut(s)	737
BsaHI	GRCGYC	1 cut(s)	120
Bse1I	ACTGG	2 cut(s)	105, 565
BseCI	ATCGAT	1 cut(s)	737
BseGI	GGATG	2 cut(s)	358, 657
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	2 cut(s)	105, 565
BseRI	GAGGAG	1 cut(s)	133
BseXI	GCAGC	1 cut(s)	47
Bsh1236I	CGCG	1 cut(s)	671
BshFI	GGCC	3 cut(s)	361, 378, 668
BshVI	ATCGAT	1 cut(s)	737
BsiSI	CCGG	1 cut(s)	623
BslFI	GGGAC	1 cut(s)	218
BsmAI	GTCTC	1 cut(s)	598
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	3 cut(s)	361, 378, 668
Bsp119I	TTCGAA	2 cut(s)	258, 303
Bsp143I	GATC	5 cut(s)	267, 486, 577, 619, 727
Bsp1720I	GCTNAGC	1 cut(s)	6
BspACI	CCGC	2 cut(s)	24, 669
BspANI	GGCC	3 cut(s)	361, 378, 668
BspCNI	CTCAG	1 cut(s)	19
BspDI	ATCGAT	1 cut(s)	737
BspFNI	CGCG	1 cut(s)	671
BspMAI	CTGCAG	1 cut(s)	65
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	572, 614
BspT104I	TTCGAA	2 cut(s)	258, 303
BsrI	ACTGG	2 cut(s)	105, 565
BssMI	GATC	5 cut(s)	267, 486, 577, 619, 727
BssNI	GRCGYC	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	205
Bst6I	CTCTTC	2 cut(s)	191, 560
BstACI	GRCGYC	1 cut(s)	120
BstAPI	GCANNNNNTGC	1 cut(s)	60
BstBI	TTCGAA	2 cut(s)	258, 303
BstC8I	GCNNGC	3 cut(s)	278, 333, 468
BstDEI	CTNAG	3 cut(s)	6, 41, 47
BstF5I	GGATG	2 cut(s)	358, 657
BstFNI	CGCG	1 cut(s)	671
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	5 cut(s)	270, 489, 580, 622, 730
BstMAI	GTCTC	1 cut(s)	598
BstMBI	GATC	5 cut(s)	267, 486, 577, 619, 727
BstMWI	GCNNNNNNNGC	2 cut(s)	60, 69
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	1 cut(s)	622
BstSFI	CTRYAG	2 cut(s)	61, 363
BstUI	CGCG	1 cut(s)	671
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	727
BstYI	RGATCY	1 cut(s)	727
Bsu15I	ATCGAT	1 cut(s)	737
BsuI	GTATCC	1 cut(s)	395
BsuRI	GGCC	3 cut(s)	361, 378, 668
BsuTUI	ATCGAT	1 cut(s)	737
BtsCI	GGATG	2 cut(s)	358, 657
BtsIMutI	CAGTG	1 cut(s)	98
Cac8I	GCNNGC	3 cut(s)	278, 333, 468
CfoI	GCGC	1 cut(s)	141
ClaI	ATCGAT	1 cut(s)	737
CseI	GACGC	2 cut(s)	60, 128
Csp6I	GTAC	1 cut(s)	156
CviAII	CATG	6 cut(s)	116, 196, 291, 391, 467, 552
CviQI	GTAC	1 cut(s)	156
DdeI	CTNAG	3 cut(s)	6, 41, 47
DpnI	GATC	5 cut(s)	269, 488, 579, 621, 729
DpnII	GATC	5 cut(s)	267, 486, 577, 619, 727
Eam1104I	CTCTTC	2 cut(s)	191, 560
EarI	CTCTTC	2 cut(s)	191, 560
Eco147I	AGGCCT	2 cut(s)	361, 378
Eco47III	AGCGCT	1 cut(s)	140
Eco57I	CTGAAG	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	584
EcoT22I	ATGCAT	1 cut(s)	468
FaeI	CATG	6 cut(s)	119, 199, 294, 394, 470, 555
FalI	AAGNNNNNCTT	2 cut(s)	417, 449
FaqI	GGGAC	1 cut(s)	218
FatI	CATG	6 cut(s)	115, 195, 290, 390, 466, 551
FblI	GTMKAC	1 cut(s)	694
Fnu4HI	GCNGC	3 cut(s)	24, 61, 669
FokI	GGATG	2 cut(s)	365, 664
Fsp4HI	GCNGC	3 cut(s)	24, 61, 669
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	3 cut(s)	24, 61, 669
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	3 cut(s)	361, 378, 668
HapII	CCGG	1 cut(s)	623
HgaI	GACGC	2 cut(s)	60, 128
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	1 cut(s)	120
Hin1II	CATG	6 cut(s)	119, 199, 294, 394, 470, 555
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	1 cut(s)	713
HpaII	CCGG	1 cut(s)	623
HphI	GGTGA	1 cut(s)	66
Hpy166II	GTNNAC	1 cut(s)	695
Hpy188I	TCNGA	2 cut(s)	248, 486
Hpy188III	TCNNGA	5 cut(s)	13, 212, 581, 611, 725
Hpy8I	GTNNAC	1 cut(s)	695
Hpy99I	CGWCG	1 cut(s)	692
HpyAV	CCTTC	6 cut(s)	162, 250, 351, 368, 410, 667
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	542
HpyCH4V	TGCA	5 cut(s)	63, 290, 390, 466, 710
HpyF10VI	GCNNNNNNNGC	2 cut(s)	60, 69
HpyF3I	CTNAG	3 cut(s)	6, 41, 47
HpySE526I	ACGT	1 cut(s)	542
Hsp92I	GRCGYC	1 cut(s)	120
Hsp92II	CATG	6 cut(s)	119, 199, 294, 394, 470, 555
HspAI	GCGC	1 cut(s)	139
Kzo9I	GATC	5 cut(s)	267, 486, 577, 619, 727
LmnI	GCTCC	2 cut(s)	146, 328
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	2 cut(s)	453, 693
MaeI	CTAG	1 cut(s)	332
MaeII	ACGT	1 cut(s)	542
MaeIII	GTNAC	1 cut(s)	212
MalI	GATC	5 cut(s)	269, 488, 579, 621, 729
MboI	GATC	5 cut(s)	267, 486, 577, 619, 727
MboII	GAAGA	8 cut(s)	178, 235, 272, 406, 437, 577, 628, 764
MflI	RGATCY	1 cut(s)	727
MluCI	AATT	5 cut(s)	263, 385, 428, 512, 584
MnlI	CCTC	8 cut(s)	48, 87, 154, 194, 499, 561, 589, 658
Mph1103I	ATGCAT	1 cut(s)	468
MseI	TTAA	3 cut(s)	348, 443, 515
MspI	CCGG	1 cut(s)	623
MspR9I	CCNGG	1 cut(s)	624
MvnI	CGCG	1 cut(s)	671
MwoI	GCNNNNNNNGC	2 cut(s)	60, 69
NciI	CCSGG	1 cut(s)	624
NdeII	GATC	5 cut(s)	267, 486, 577, 619, 727
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	6 cut(s)	119, 199, 294, 394, 470, 555
NmuCI	GTSAC	1 cut(s)	212
NsiI	ATGCAT	1 cut(s)	468
NspI	RCATGY	1 cut(s)	470
NspV	TTCGAA	2 cut(s)	258, 303
PaeI	GCATGC	1 cut(s)	470
PceI	AGGCCT	2 cut(s)	361, 378
PfeI	GAWTC	1 cut(s)	713
PfoI	TCCNGGA	1 cut(s)	622
PkrI	GCNGC	3 cut(s)	25, 62, 670
PstI	CTGCAG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	727
RsaI	GTAC	1 cut(s)	157
RsaNI	GTAC	1 cut(s)	156
SaqAI	TTAA	3 cut(s)	348, 443, 515
SatI	GCNGC	3 cut(s)	24, 61, 669
Sau3AI	GATC	5 cut(s)	267, 486, 577, 619, 727
ScrFI	CCNGG	1 cut(s)	624
SetI	ASST	9 cut(s)	12, 74, 79, 94, 333, 421, 545, 600, 632
SfaNI	GCATC	2 cut(s)	453, 693
SfcI	CTRYAG	2 cut(s)	61, 363
SfuI	TTCGAA	2 cut(s)	258, 303
SphI	GCATGC	1 cut(s)	470
Sse9I	AATT	5 cut(s)	263, 385, 428, 512, 584
SseBI	AGGCCT	2 cut(s)	361, 378
SsiI	CCGC	2 cut(s)	24, 669
SspI	AATATT	1 cut(s)	530
SspMI	CTAG	1 cut(s)	332
StuI	AGGCCT	2 cut(s)	361, 378
StyD4I	CCNGG	1 cut(s)	622
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	545
TaqI	TCGA	7 cut(s)	79, 166, 189, 258, 270, 303, 737
TaqII	GACCGA	1 cut(s)	680
TasI	AATT	5 cut(s)	263, 385, 428, 512, 584
TauI	GCSGC	2 cut(s)	26, 671
TfiI	GAWTC	1 cut(s)	713
Tru1I	TTAA	3 cut(s)	348, 443, 515
Tru9I	TTAA	3 cut(s)	348, 443, 515
TscAI	CASTG	1 cut(s)	105
TseFI	GTSAC	1 cut(s)	212
TseI	GCWGC	1 cut(s)	60
Tsp45I	GTSAC	1 cut(s)	212
TspDTI	ATGAA	3 cut(s)	140, 407, 540
TspRI	CASTG	1 cut(s)	105
XapI	RAATTY	1 cut(s)	584
XceI	RCATGY	1 cut(s)	470
XmiI	GTMKAC	1 cut(s)	694
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.