pycom1341g00070

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001341
Physical Location & Seq
Forward (+)
126953 .. 127505
553 bp
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UTR
Exon/CDS
Intron
pycom1341g00070.3

Sequence Viewer

Length: 405 bp
ATGCAATTAGAAACCAAATCCTTATCATTGTGTTGGAAGGTAACCTACGACACAAAAACGACTCAAAACACTCTTTTTAGGCTTTTCAAAACATTTTTTTCAAATTTTTATGTGTTTTTCGGAGTTATAAAACAAAACACGCTAAAACAGTTTAAAAACACCTTAAAACAGCAAGGAACAACATTTGAAGTTATGGGTGATAAAATCCCACGAATTTGCATTAACAACATTAGTTACCCCCCCACACTTAAATCAAACATTGTCCTCAATGTTTTAAAAGAGTTTAGGGACGCAAATCTGGTTATGGAGTGTAAATTCCATCTTCTCCTTGGTAATTGCATTGAGGCTTTTGATCTTTGTGATTCCACAGCAGGATGGTTCTTTTGGTCTCCCCCGAAGGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

135

Amino Acids

15.63

Weight (kDa)

9.16

Isoelectric Point (pI)

32.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AcsI RAATTY 3 cut(s) 103, 213, 314
AgsI TTSAA 3 cut(s) 88, 102, 188
Alw26I GTCTC 1 cut(s) 393
ApoI RAATTY 3 cut(s) 103, 213, 314
AsuHPI GGTGA 1 cut(s) 209
BarI GAAGNNNNNNTAC 2 cut(s) 29, 61
BccI CCATC 2 cut(s) 327, 369
BcoDI GTCTC 1 cut(s) 393
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 328
BseDI CCNNGG 1 cut(s) 328
BseGI GGATG 1 cut(s) 380
BslFI GGGAC 1 cut(s) 302
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 302
Bso31I GGTCTC 1 cut(s) 393
Bsp143I GATC 1 cut(s) 352
BspTNI GGTCTC 1 cut(s) 393
BssECI CCNNGG 1 cut(s) 328
BssMI GATC 1 cut(s) 352
BssT1I CCWWGG 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 150
BstEII GGTNACC 1 cut(s) 40
BstF5I GGATG 1 cut(s) 380
BstKTI GATC 1 cut(s) 355
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 1 cut(s) 352
BstPI GGTNACC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 380
CseI GACGC 1 cut(s) 299
CviJI RGCY 2 cut(s) 82, 347
CviKI_1 RGCY 2 cut(s) 82, 347
DpnI GATC 1 cut(s) 354
DpnII GATC 1 cut(s) 352
DraI TTTAAA 2 cut(s) 154, 276
Eco130I CCWWGG 1 cut(s) 328
Eco31I GGTCTC 1 cut(s) 393
Eco91I GGTNACC 1 cut(s) 40
EcoO65I GGTNACC 1 cut(s) 40
EcoT14I CCWWGG 1 cut(s) 328
ErhI CCWWGG 1 cut(s) 328
FaiI YATR 4 cut(s) 111, 128, 194, 305
FaqI GGGAC 1 cut(s) 302
FokI GGATG 1 cut(s) 387
HgaI GACGC 1 cut(s) 299
HinfI GANTC 2 cut(s) 61, 362
HphI GGTGA 1 cut(s) 209
Hpy188I TCNGA 2 cut(s) 122, 404
HpyAV CCTTC 2 cut(s) 31, 391
HpyCH4III ACNGT 1 cut(s) 150
HpyCH4V TGCA 3 cut(s) 4, 219, 339
Kzo9I GATC 1 cut(s) 352
LpnPI CCDG 2 cut(s) 284, 357
MaeIII GTNAC 2 cut(s) 40, 233
MalI GATC 1 cut(s) 354
MboI GATC 1 cut(s) 352
MboII GAAGA 1 cut(s) 314
MluCI AATT 5 cut(s) 5, 103, 213, 314, 334
MlyI GAGTC 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 14
MnlI CCTC 2 cut(s) 275, 337
MseI TTAA 5 cut(s) 153, 164, 222, 249, 275
NdeII GATC 1 cut(s) 352
PfeI GAWTC 1 cut(s) 362
PleI GAGTC 1 cut(s) 55
PpsI GAGTC 1 cut(s) 55
PsiI TTATAA 1 cut(s) 128
PspEI GGTNACC 1 cut(s) 40
SaqAI TTAA 5 cut(s) 153, 164, 222, 249, 275
Sau3AI GATC 1 cut(s) 352
SchI GAGTC 1 cut(s) 55
SetI ASST 4 cut(s) 42, 47, 164, 402
SgeI CNNG 6 cut(s) 151, 185, 222, 311, 341, 384
Sse9I AATT 5 cut(s) 5, 103, 213, 314, 334
StyI CCWWGG 1 cut(s) 328
TaaI ACNGT 1 cut(s) 150
TasI AATT 5 cut(s) 5, 103, 213, 314, 334
TfiI GAWTC 1 cut(s) 362
Tru1I TTAA 5 cut(s) 153, 164, 222, 249, 275
Tru9I TTAA 5 cut(s) 153, 164, 222, 249, 275
XapI RAATTY 3 cut(s) 103, 213, 314
XcmI CCANNNNNNNNNTGG 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.