pycom17g16600

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
14664105 .. 14664844
740 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g16600.1

Sequence Viewer

Length: 573 bp
ATGGACAGCAATTGTTCATCGGGGAAAGTCTCTTGGATGGCAACTACGTTCTCACTCCCTTTCTTGTCTCGAATTTCAATATCAAACTCTTGGAGAAGAAGCATCCATCTAATGAGCCGTGGTTTAGCCTCCTTTTTAGTGAATAAGTACCTAAGAGCTGCATGGTCAGAAAATACAATCACTTTAGTGCCAAGTAAATATGAACGAAACTTATCTAAAGCAAATACAACGGCAAGAAGTCCTAGAAGCATAGTAGATGGCGTGGGAATGCTTGTTCTTTCTTTGACCCAAAACAGCCCCTATTGCATAATCGGATGCATCACACATGAGTTCAAAAGGCAACGTCCAATCAGGTGGAATGATGATAGGTGCCGTGGTAAGCTTGTCCTTGAGAAGCTTGAATGCCTTCTCACACTCCTCGGGTTGTGCAATCTTGGAGAAATCCTTGATAAATCGCCTATAGAATCTTGCATGGCCAAGAAAAGAACGAACCTCTTGATAGGAGCATATTCATGCGATTTAAATGGCTTTCCTTTAAGCTATTTTCGTGTGTTTGTAGGTCCAAAGGGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

191

Amino Acids

21.35

Weight (kDa)

9.69

Isoelectric Point (pI)

58.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 369
AcoI YGGCCR 1 cut(s) 474
AcsI RAATTY 1 cut(s) 72
AfaI GTAC 1 cut(s) 149
AgsI TTSAA 3 cut(s) 78, 334, 401
AleI CACNNNNGTG 1 cut(s) 185
AloI GAACNNNNNNTCC 2 cut(s) 258, 290
AluBI AGCT 4 cut(s) 158, 382, 397, 540
AluI AGCT 4 cut(s) 158, 382, 397, 540
Alw26I GTCTC 2 cut(s) 34, 72
Ama87I CYCGRG 1 cut(s) 419
AoxI GGCC 1 cut(s) 474
ApeKI GCWGC 1 cut(s) 158
ApoI RAATTY 1 cut(s) 72
Asp700I GAANNNNTTC 1 cut(s) 405
AspS9I GGNCC 1 cut(s) 560
AvaI CYCGRG 1 cut(s) 419
AvaII GGWCC 1 cut(s) 560
BalI TGGCCA 1 cut(s) 476
BanI GGYRCC 1 cut(s) 369
BbvI GCAGC 1 cut(s) 145
BccI CCATC 3 cut(s) 31, 114, 251
BceAI ACGGC 3 cut(s) 102, 246, 357
BcoDI GTCTC 2 cut(s) 34, 72
BfaI CTAG 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 459
BisI GCNGC 1 cut(s) 159
BlsI GCNGC 1 cut(s) 160
Bme18I GGWCC 1 cut(s) 560
BmeT110I CYCGRG 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 560
BmiI GGNNCC 1 cut(s) 371
BmsI GCATC 3 cut(s) 111, 305, 327
BpuEI CTTGAG 1 cut(s) 410
BsaJI CCNNGG 3 cut(s) 118, 373, 418
BseDI CCNNGG 3 cut(s) 118, 373, 418
BseGI GGATG 3 cut(s) 42, 102, 320
BseRI GAGGAG 1 cut(s) 407
BseXI GCAGC 1 cut(s) 145
BshFI GGCC 1 cut(s) 476
BshNI GGYRCC 1 cut(s) 369
BsiHKCI CYCGRG 1 cut(s) 419
BsmAI GTCTC 2 cut(s) 34, 72
BsmI GAATGC 2 cut(s) 273, 407
BsnI GGCC 1 cut(s) 476
BsoBI CYCGRG 1 cut(s) 419
BspANI GGCC 1 cut(s) 476
BspLI GGNNCC 1 cut(s) 371
BspT107I GGYRCC 1 cut(s) 369
BssECI CCNNGG 3 cut(s) 118, 373, 418
BstDEI CTNAG 1 cut(s) 152
BstDSI CCRYGG 2 cut(s) 118, 373
BstF5I GGATG 3 cut(s) 42, 102, 320
BstMAI GTCTC 2 cut(s) 34, 72
BstMWI GCNNNNNNNGC 1 cut(s) 303
BstSFI CTRYAG 1 cut(s) 459
BstV1I GCAGC 1 cut(s) 145
BstXI CCANNNNNNTGG 1 cut(s) 354
BsuRI GGCC 1 cut(s) 476
BtgI CCRYGG 2 cut(s) 118, 373
BtsCI GGATG 3 cut(s) 42, 102, 320
Cfr13I GGNCC 1 cut(s) 560
Csp6I GTAC 1 cut(s) 148
CviAII CATG 4 cut(s) 162, 326, 472, 513
CviQI GTAC 1 cut(s) 148
DdeI CTNAG 1 cut(s) 152
DraI TTTAAA 1 cut(s) 522
EaeI YGGCCR 1 cut(s) 474
Eco47I GGWCC 1 cut(s) 560
Eco88I CYCGRG 1 cut(s) 419
EcoT22I ATGCAT 1 cut(s) 320
FaeI CATG 4 cut(s) 165, 329, 475, 516
FaiI YATR 9 cut(s) 163, 201, 251, 308, 327, 461, 473, 508, 514
FatI CATG 4 cut(s) 161, 325, 471, 512
Fnu4HI GCNGC 1 cut(s) 159
FokI GGATG 3 cut(s) 49, 89, 327
Fsp4HI GCNGC 1 cut(s) 159
FspBI CTAG 1 cut(s) 243
GluI GCNGC 1 cut(s) 159
HaeIII GGCC 1 cut(s) 476
Hin1II CATG 4 cut(s) 165, 329, 475, 516
HindIII AAGCTT 2 cut(s) 380, 395
HinfI GANTC 1 cut(s) 464
Hpy188I TCNGA 2 cut(s) 169, 314
Hpy188III TCNNGA 2 cut(s) 69, 496
HpyAV CCTTC 1 cut(s) 416
HpyCH4IV ACGT 2 cut(s) 47, 343
HpyCH4V TGCA 5 cut(s) 161, 306, 318, 429, 471
HpyF10VI GCNNNNNNNGC 1 cut(s) 303
HpyF3I CTNAG 1 cut(s) 152
HpySE526I ACGT 2 cut(s) 47, 343
Hsp92II CATG 4 cut(s) 165, 329, 475, 516
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 1 cut(s) 337
Lsp1109I GCAGC 1 cut(s) 145
LweI GCATC 3 cut(s) 111, 305, 327
MaeI CTAG 1 cut(s) 243
MaeII ACGT 2 cut(s) 47, 343
MboII GAAGA 1 cut(s) 108
MfeI CAATTG 1 cut(s) 10
MlsI TGGCCA 1 cut(s) 476
MluCI AATT 2 cut(s) 10, 72
MluNI TGGCCA 1 cut(s) 476
MnlI CCTC 3 cut(s) 139, 428, 503
Mox20I TGGCCA 1 cut(s) 476
Mph1103I ATGCAT 1 cut(s) 320
MroXI GAANNNNTTC 1 cut(s) 405
MscI TGGCCA 1 cut(s) 476
MseI TTAA 2 cut(s) 521, 536
MslI CAYNNNNRTG 2 cut(s) 185, 511
Msp20I TGGCCA 1 cut(s) 476
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 2 cut(s) 273, 407
MwoI GCNNNNNNNGC 1 cut(s) 303
NlaIII CATG 4 cut(s) 165, 329, 475, 516
NlaIV GGNNCC 1 cut(s) 371
NsiI ATGCAT 1 cut(s) 320
OliI CACNNNNGTG 1 cut(s) 185
PctI GAATGC 2 cut(s) 273, 407
PdmI GAANNNNTTC 1 cut(s) 405
PfeI GAWTC 1 cut(s) 464
PkrI GCNGC 1 cut(s) 160
PspN4I GGNNCC 1 cut(s) 371
PspPI GGNCC 1 cut(s) 560
RsaI GTAC 1 cut(s) 149
RsaNI GTAC 1 cut(s) 148
RseI CAYNNNNRTG 2 cut(s) 185, 511
SaqAI TTAA 2 cut(s) 521, 536
SatI GCNGC 1 cut(s) 159
Sau96I GGNCC 1 cut(s) 560
SfaNI GCATC 3 cut(s) 111, 305, 327
SfcI CTRYAG 1 cut(s) 459
SinI GGWCC 1 cut(s) 560
SmiI ATTTAAAT 1 cut(s) 522
SmiMI CAYNNNNRTG 2 cut(s) 185, 511
SmlI CTYRAG 1 cut(s) 389
SmoI CTYRAG 1 cut(s) 389
Sse9I AATT 2 cut(s) 10, 72
SspMI CTAG 1 cut(s) 243
SwaI ATTTAAAT 1 cut(s) 522
TaiI ACGT 2 cut(s) 50, 346
TaqI TCGA 1 cut(s) 70
TasI AATT 2 cut(s) 10, 72
TfiI GAWTC 1 cut(s) 464
Tru1I TTAA 2 cut(s) 521, 536
Tru9I TTAA 2 cut(s) 521, 536
TseI GCWGC 1 cut(s) 158
TspDTI ATGAA 3 cut(s) 6, 216, 501
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 1 cut(s) 72
XmnI GAANNNNTTC 1 cut(s) 405
XspI CTAG 1 cut(s) 243
Zsp2I ATGCAT 1 cut(s) 320
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.