pycom1739g00030

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
tig00001739
OG0015723
Physical Location & Seq
Forward (+)
109849 .. 110650
802 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom1739g00030.2

Sequence Viewer

Length: 186 bp
ATGGAGGGGTACCTCCTCCACGACATGAAACAAACCAACGCCTCAATGGATAGCAGCTGCTCATCGGGAAAAGTTTCAGGGATAGGTACGGCATGTTCATGCTCCTCGTGGATCATTCGGCTTAAATGGTCAGCCACTACATTCTCGCTTCCTTTCTTATCCCGGATTTCAATATCAAATTCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

62

Amino Acids

6.58

Weight (kDa)

8.61

Isoelectric Point (pI)

44.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 9
AccB1I GGYRCC 1 cut(s) 9
AclWI GGATC 1 cut(s) 119
AcsI RAATTY 1 cut(s) 178
AfaI GTAC 2 cut(s) 11, 88
AgsI TTSAA 1 cut(s) 171
AluBI AGCT 1 cut(s) 57
AluI AGCT 1 cut(s) 57
AlwI GGATC 1 cut(s) 119
ApeKI GCWGC 2 cut(s) 54, 57
ApoI RAATTY 1 cut(s) 178
Asp700I GAANNNNTTC 1 cut(s) 73
Asp718I GGTACC 1 cut(s) 9
AsuC2I CCSGG 1 cut(s) 163
BanI GGYRCC 1 cut(s) 9
BauI CACGAG 1 cut(s) 106
BbvI GCAGC 2 cut(s) 44, 66
BceAI ACGGC 1 cut(s) 105
BcnI CCSGG 1 cut(s) 163
BisI GCNGC 2 cut(s) 55, 58
BlsI GCNGC 2 cut(s) 56, 59
Bme1390I CCNGG 1 cut(s) 163
BmiI GGNNCC 1 cut(s) 11
BmrFI CCNGG 1 cut(s) 163
BpuMI CCSGG 1 cut(s) 163
BseRI GAGGAG 2 cut(s) 5, 94
BseXI GCAGC 2 cut(s) 44, 66
BshNI GGYRCC 1 cut(s) 9
BsiSI CCGG 1 cut(s) 163
Bsp143I GATC 1 cut(s) 111
BspLI GGNNCC 1 cut(s) 11
BspPI GGATC 1 cut(s) 119
BspT107I GGYRCC 1 cut(s) 9
BssMI GATC 1 cut(s) 111
BssSI CACGAG 1 cut(s) 106
Bst2BI CACGAG 1 cut(s) 106
BstKTI GATC 1 cut(s) 114
BstMBI GATC 1 cut(s) 111
BstNSI RCATGY 1 cut(s) 96
BstSCI CCNGG 1 cut(s) 161
BstV1I GCAGC 2 cut(s) 44, 66
Csp6I GTAC 2 cut(s) 10, 87
CviAII CATG 3 cut(s) 25, 93, 99
CviJI RGCY 3 cut(s) 57, 121, 134
CviKI_1 RGCY 3 cut(s) 57, 121, 134
CviQI GTAC 2 cut(s) 10, 87
DpnI GATC 1 cut(s) 113
DpnII GATC 1 cut(s) 111
FaeI CATG 3 cut(s) 28, 96, 102
FaiI YATR 3 cut(s) 26, 94, 100
FatI CATG 3 cut(s) 24, 92, 98
Fnu4HI GCNGC 2 cut(s) 55, 58
Fsp4HI GCNGC 2 cut(s) 55, 58
GluI GCNGC 2 cut(s) 55, 58
HapII CCGG 1 cut(s) 163
Hin1II CATG 3 cut(s) 28, 96, 102
HpaII CCGG 1 cut(s) 163
Hpy188III TCNNGA 2 cut(s) 66, 183
Hsp92II CATG 3 cut(s) 28, 96, 102
KpnI GGTACC 1 cut(s) 13
Kzo9I GATC 1 cut(s) 111
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 2 cut(s) 63, 176
Lsp1109I GCAGC 2 cut(s) 44, 66
MalI GATC 1 cut(s) 113
MboI GATC 1 cut(s) 111
MluCI AATT 1 cut(s) 178
MnlI CCTC 4 cut(s) 23, 26, 52, 115
MroXI GAANNNNTTC 1 cut(s) 73
MseI TTAA 1 cut(s) 123
MslI CAYNNNNRTG 1 cut(s) 97
MspA1I CMGCKG 1 cut(s) 57
MspI CCGG 1 cut(s) 163
MspR9I CCNGG 1 cut(s) 163
NciI CCSGG 1 cut(s) 163
NdeII GATC 1 cut(s) 111
NlaIII CATG 3 cut(s) 28, 96, 102
NlaIV GGNNCC 1 cut(s) 11
NspI RCATGY 1 cut(s) 96
PdmI GAANNNNTTC 1 cut(s) 73
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 2 cut(s) 56, 59
PspN4I GGNNCC 1 cut(s) 11
PsrI GAACNNNNNNTAC 2 cut(s) 79, 111
PvuII CAGCTG 1 cut(s) 57
RsaI GTAC 2 cut(s) 11, 88
RsaNI GTAC 2 cut(s) 10, 87
RseI CAYNNNNRTG 1 cut(s) 97
SaqAI TTAA 1 cut(s) 123
SatI GCNGC 2 cut(s) 55, 58
Sau3AI GATC 1 cut(s) 111
ScrFI CCNGG 1 cut(s) 163
SetI ASST 3 cut(s) 15, 59, 88
SmiMI CAYNNNNRTG 1 cut(s) 97
Sse9I AATT 1 cut(s) 178
StyD4I CCNGG 1 cut(s) 161
TasI AATT 1 cut(s) 178
Tru1I TTAA 1 cut(s) 123
Tru9I TTAA 1 cut(s) 123
TseI GCWGC 2 cut(s) 54, 57
TspDTI ATGAA 2 cut(s) 41, 87
XapI RAATTY 1 cut(s) 178
XceI RCATGY 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 1 cut(s) 43
XmnI GAANNNNTTC 1 cut(s) 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.