pycom17g18530

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0015723
Physical Location & Seq
Forward (+)
15910892 .. 15911876
985 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g18530.6

Sequence Viewer

Length: 747 bp
ATGCTCCTCAAACATCTCGTAATAGGGCTTCAATCGATGCCCATTCACTTTGAATTCTTGCTGCTAGTAACAACAAACGGGCCAATCCATTTAGAACGCAACTTACCAGGAAACAAACGTAGGCGAGAGTTAAAAAGTAACACTTTCTGCCCAACTGTGAAGGTCTTGGTTCGAATCATTTTATCATGGAATGCTTTGGTCTTGCTCCTCAAGTTCATTCAATTGGAGCTTCCTATGAACTCCCGCTGCATCTATGTCCATGTTGAAAATCTTCACGGCCCAATGTGCCTTCCCAATGGGTGTTTGTATGCCGTACGATATGCCCACAGTGCATCATCTAAACGTAAGCTCCAATCCCTCCTTGTTGGTCCAACGGTCTTCTCCAAAATTTGTTTTATTTCTCGGTTAGACACCTCGGCTTGGCCATTTCAACGCCTCAATGGTCCGATTGCAAAAGTGAGACCCTCCATCACTTATGATTACTCTCGGCATTCCAAACCTAGCAAAAATGTTAGTTTTCACGAAATCTGCAACCACCTTAGAATCGTTAGTACGGTGCAAGATATAAGTGAAACCATAAGATGGAGGGAAAGGGCCCATGAAATCAATGCCCCAAACATCAAAAATTTCAACATTAAAGACAGGGGTTTGCGGCATTTGGTCCTTGGTACCTATGTTACCCATTCGTTGGCAACGATCACAAGACATACAAAAGGTTCTAGCATCCCTAATATAGTCGGCCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

249

Amino Acids

28.32

Weight (kDa)

10.27

Isoelectric Point (pI)

45.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 668
AccB7I CCANNNNNTGG 2 cut(s) 582, 688
AciI CCGC 2 cut(s) 244, 652
AcoI YGGCCR 2 cut(s) 422, 739
AcsI RAATTY 3 cut(s) 53, 387, 625
AfaI GTAC 3 cut(s) 315, 553, 670
AfiI CCNNNNNNNGG 3 cut(s) 420, 582, 688
AgsI TTSAA 6 cut(s) 32, 53, 221, 266, 431, 631
AjnI CCWGG 1 cut(s) 106
AluBI AGCT 2 cut(s) 229, 349
AluI AGCT 2 cut(s) 229, 349
Alw26I GTCTC 1 cut(s) 454
AoxI GGCC 5 cut(s) 80, 277, 422, 594, 739
ApaI GGGCCC 1 cut(s) 598
ApeKI GCWGC 2 cut(s) 61, 246
ApoI RAATTY 3 cut(s) 53, 387, 625
Asp700I GAANNNNTTC 1 cut(s) 270
Asp718I GGTACC 1 cut(s) 668
AspS9I GGNCC 7 cut(s) 80, 278, 368, 443, 594, 595, 661
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 3 cut(s) 368, 443, 661
BaeGI GKGCMC 1 cut(s) 598
BaeI ACNNNNGTAYC 2 cut(s) 660, 693
BalI TGGCCA 1 cut(s) 424
BanI GGYRCC 1 cut(s) 668
BanII GRGCYC 1 cut(s) 598
BarI GAAGNNNNNNTAC 2 cut(s) 12, 44
BbsI GAAGAC 1 cut(s) 370
BbvI GCAGC 2 cut(s) 48, 233
BccI CCATC 2 cut(s) 476, 576
BceAI ACGGC 2 cut(s) 292, 296
BciT130I CCWGG 1 cut(s) 108
BcoDI GTCTC 1 cut(s) 454
BfaI CTAG 3 cut(s) 65, 501, 720
BisI GCNGC 3 cut(s) 62, 247, 653
BlsI GCNGC 3 cut(s) 63, 248, 654
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 3 cut(s) 368, 443, 661
BmgT120I GGNCC 7 cut(s) 80, 278, 368, 443, 594, 595, 661
BmiI GGNNCC 2 cut(s) 596, 670
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 4 cut(s) 27, 258, 341, 732
BpiI GAAGAC 1 cut(s) 370
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 194
Bsa29I ATCGAT 1 cut(s) 35
BsaI GGTCTC 1 cut(s) 454
BsaJI CCNNGG 2 cut(s) 414, 664
BsaXI ACNNNNNCTCC 2 cut(s) 333, 363
Bsc4I CCNNNNNNNGG 3 cut(s) 420, 582, 688
BseBI CCWGG 1 cut(s) 108
BseCI ATCGAT 1 cut(s) 35
BseDI CCNNGG 2 cut(s) 414, 664
BseGI GGATG 1 cut(s) 723
BseLI CCNNNNNNNGG 3 cut(s) 420, 582, 688
BseRI GAGGAG 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 598
BseXI GCAGC 2 cut(s) 48, 233
BshFI GGCC 5 cut(s) 82, 279, 424, 596, 741
BshNI GGYRCC 1 cut(s) 668
BshVI ATCGAT 1 cut(s) 35
BsiWI CGTACG 1 cut(s) 313
BslI CCNNNNNNNGG 3 cut(s) 420, 582, 688
BsmAI GTCTC 1 cut(s) 454
BsmI GAATGC 2 cut(s) 196, 490
BsnI GGCC 5 cut(s) 82, 279, 424, 596, 741
Bso31I GGTCTC 1 cut(s) 454
Bsp119I TTCGAA 1 cut(s) 172
Bsp120I GGGCCC 1 cut(s) 594
Bsp1286I GDGCHC 1 cut(s) 598
Bsp143I GATC 1 cut(s) 696
BspACI CCGC 2 cut(s) 244, 652
BspANI GGCC 5 cut(s) 82, 279, 424, 596, 741
BspDI ATCGAT 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 596, 670
BspT104I TTCGAA 1 cut(s) 172
BspT107I GGYRCC 1 cut(s) 668
BspTNI GGTCTC 1 cut(s) 454
BssECI CCNNGG 2 cut(s) 414, 664
BssMI GATC 1 cut(s) 696
BssT1I CCWWGG 1 cut(s) 664
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 4 cut(s) 157, 329, 376, 556
BstBI TTCGAA 1 cut(s) 172
BstDEI CTNAG 1 cut(s) 539
BstF5I GGATG 1 cut(s) 723
BstKTI GATC 1 cut(s) 699
BstMAI GTCTC 1 cut(s) 454
BstMBI GATC 1 cut(s) 696
BstMWI GCNNNNNNNGC 2 cut(s) 285, 329
BstNI CCWGG 1 cut(s) 108
BstSCI CCNGG 1 cut(s) 106
BstSLI GKGCMC 1 cut(s) 598
BstV1I GCAGC 2 cut(s) 48, 233
BstV2I GAAGAC 1 cut(s) 370
Bsu15I ATCGAT 1 cut(s) 35
BsuRI GGCC 5 cut(s) 82, 279, 424, 596, 741
BsuTUI ATCGAT 1 cut(s) 35
BtsCI GGATG 1 cut(s) 723
BtsIMutI CAGTG 1 cut(s) 334
Cfr13I GGNCC 7 cut(s) 80, 278, 368, 443, 594, 595, 661
ClaI ATCGAT 1 cut(s) 35
Csp6I GTAC 3 cut(s) 314, 552, 669
CviAII CATG 3 cut(s) 186, 260, 599
CviJI RGCY 9 cut(s) 28, 82, 229, 279, 349, 419, 424, 596, 741
CviKI_1 RGCY 9 cut(s) 28, 82, 229, 279, 349, 419, 424, 596, 741
CviQI GTAC 3 cut(s) 314, 552, 669
DdeI CTNAG 1 cut(s) 539
DpnI GATC 1 cut(s) 698
DpnII GATC 1 cut(s) 696
EaeI YGGCCR 2 cut(s) 422, 739
Eco130I CCWWGG 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 598
Eco31I GGTCTC 1 cut(s) 454
Eco47I GGWCC 3 cut(s) 368, 443, 661
EcoO109I RGGNCCY 1 cut(s) 594
EcoRI GAATTC 1 cut(s) 53
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 1 cut(s) 664
EcoT38I GRGCYC 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 664
FaeI CATG 3 cut(s) 189, 263, 602
FalI AAGNNNNNCTT 2 cut(s) 127, 159
FatI CATG 3 cut(s) 185, 259, 598
FauI CCCGC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 62, 247, 653
FokI GGATG 1 cut(s) 710
FriOI GRGCYC 1 cut(s) 598
Fsp4HI GCNGC 3 cut(s) 62, 247, 653
FspBI CTAG 3 cut(s) 65, 501, 720
GluI GCNGC 3 cut(s) 62, 247, 653
HaeIII GGCC 5 cut(s) 82, 279, 424, 596, 741
Hin1II CATG 3 cut(s) 189, 263, 602
HinfI GANTC 2 cut(s) 174, 543
Hpy188I TCNGA 1 cut(s) 447
Hpy188III TCNNGA 1 cut(s) 521
HpyAV CCTTC 2 cut(s) 154, 299
HpyCH4III ACNGT 4 cut(s) 157, 329, 376, 556
HpyCH4IV ACGT 2 cut(s) 118, 343
HpyCH4V TGCA 5 cut(s) 249, 332, 452, 531, 559
HpyF10VI GCNNNNNNNGC 2 cut(s) 285, 329
HpyF3I CTNAG 1 cut(s) 539
HpySE526I ACGT 2 cut(s) 118, 343
Hsp92II CATG 3 cut(s) 189, 263, 602
KpnI GGTACC 1 cut(s) 672
Kzo9I GATC 1 cut(s) 696
LmnI GCTCC 4 cut(s) 9, 210, 226, 354
LpnPI CCDG 3 cut(s) 93, 120, 628
Lsp1109I GCAGC 2 cut(s) 48, 233
LweI GCATC 4 cut(s) 27, 258, 341, 732
MaeI CTAG 3 cut(s) 65, 501, 720
MaeII ACGT 2 cut(s) 118, 343
MaeIII GTNAC 3 cut(s) 67, 137, 676
MalI GATC 1 cut(s) 698
MboI GATC 1 cut(s) 696
MboII GAAGA 2 cut(s) 263, 370
MfeI CAATTG 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 598
MlsI TGGCCA 1 cut(s) 424
MluCI AATT 4 cut(s) 53, 221, 387, 625
MluNI TGGCCA 1 cut(s) 424
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 7 cut(s) 17, 218, 368, 424, 446, 475, 579
Mox20I TGGCCA 1 cut(s) 424
MroXI GAANNNNTTC 1 cut(s) 270
MscI TGGCCA 1 cut(s) 424
MseI TTAA 2 cut(s) 131, 636
Msp20I TGGCCA 1 cut(s) 424
MspA1I CMGCKG 1 cut(s) 246
MspR9I CCNGG 1 cut(s) 108
MunI CAATTG 1 cut(s) 221
Mva1269I GAATGC 2 cut(s) 196, 490
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 2 cut(s) 285, 329
NdeII GATC 1 cut(s) 696
NlaIII CATG 3 cut(s) 189, 263, 602
NlaIV GGNNCC 2 cut(s) 596, 670
NmeAIII GCCGAG 2 cut(s) 395, 466
NspV TTCGAA 1 cut(s) 172
PcsI WCGNNNNNNNCGW 1 cut(s) 692
PctI GAATGC 2 cut(s) 196, 490
PdmI GAANNNNTTC 1 cut(s) 270
PfeI GAWTC 2 cut(s) 174, 543
Pfl23II CGTACG 1 cut(s) 313
PflMI CCANNNNNTGG 2 cut(s) 582, 688
PkrI GCNGC 3 cut(s) 63, 248, 654
Psp6I CCWGG 1 cut(s) 106
PspGI CCWGG 1 cut(s) 106
PspLI CGTACG 1 cut(s) 313
PspN4I GGNNCC 2 cut(s) 596, 670
PspOMI GGGCCC 1 cut(s) 594
PspPI GGNCC 7 cut(s) 80, 278, 368, 443, 594, 595, 661
PsrI GAACNNNNNNTAC 2 cut(s) 87, 119
RsaI GTAC 3 cut(s) 315, 553, 670
RsaNI GTAC 3 cut(s) 314, 552, 669
SaqAI TTAA 2 cut(s) 131, 636
SatI GCNGC 3 cut(s) 62, 247, 653
Sau3AI GATC 1 cut(s) 696
Sau96I GGNCC 7 cut(s) 80, 278, 368, 443, 594, 595, 661
ScrFI CCNGG 1 cut(s) 108
SduI GDGCHC 1 cut(s) 598
SfaNI GCATC 4 cut(s) 27, 258, 341, 732
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 3 cut(s) 368, 443, 661
SmlI CTYRAG 1 cut(s) 209
SmoI CTYRAG 1 cut(s) 209
Sse9I AATT 4 cut(s) 53, 221, 387, 625
SsiI CCGC 2 cut(s) 244, 652
SspMI CTAG 3 cut(s) 65, 501, 720
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 1 cut(s) 664
TaaI ACNGT 4 cut(s) 157, 329, 376, 556
TaiI ACGT 2 cut(s) 121, 346
TaqI TCGA 2 cut(s) 35, 172
TasI AATT 4 cut(s) 53, 221, 387, 625
TauI GCSGC 1 cut(s) 655
TfiI GAWTC 2 cut(s) 174, 543
Tru1I TTAA 2 cut(s) 131, 636
Tru9I TTAA 2 cut(s) 131, 636
TscAI CASTG 1 cut(s) 334
TseI GCWGC 2 cut(s) 61, 246
TspDTI ATGAA 3 cut(s) 205, 251, 615
TspRI CASTG 1 cut(s) 334
Van91I CCANNNNNTGG 2 cut(s) 582, 688
VpaK11BI GGWCC 3 cut(s) 368, 443, 661
XapI RAATTY 3 cut(s) 53, 387, 625
XmnI GAANNNNTTC 1 cut(s) 270
XspI CTAG 3 cut(s) 65, 501, 720
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.