pycom13g01120
MYB Family

Myb family transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0013661
Physical Location & Seq
Reverse (-)
723083 .. 726119
3037 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 852 bp
ATGACTACAAGTAGTTGCAGTGCAAGGAACTGCGCTGTTAGGCAGTATGTGAGATCCAAGGTGCCCCGTTTGAGATGGACTCCTGAACTTCATCGCTGCTTTCTTCAGGCCATTGAAAGGCTCGGAGGCCATAAAAAGGCTACTCCAAAACTTGTTCTTCAGTTGATGGATGTCAAGGGGATCACCATTTCTCATGTTAAAAGCCATCTCCAGATGTATAGAAGCATGAAAGGCGAACCGATTAGAAGACAAGCTAGGGTGCAAACAAGAAAACTACATTCGTTTGAAGAGGCCGAGGATGATGGGTGTGTTGAAGAAGTAAATGGTTTGAGCTTTTACCCATCTTCCAAACCACGAGAGAATCCGATTCCGATTCCCAGGTCATCTGCAACCCCCGCCGTTCAAAAAGCAAGAACGGAGACGATGAGTTCAAACATATCAGAGAATTCGCAGCCGCAGCAGCAGATGCTATGCAGCCAAGGAGGAATATATGAGAGAGTCTCAAATCCGTACTCTTTTGATGATTATGTGCTGGCATTGGGAATAAAGGAGGATCCTCACCCTTCAGCCTTCAAATTTGCTTTGCCAGAGTATGAGTTCTTGAAGGTTACCACCAAACAAGAGGCAGGAAGAGCACATGACAAAGACGACGATGAAGCCGGTGAATGTGAATTATCACTGTCCCTCTCGTTACACCATCCCCCCTCCCACAAGAGTAATGCTTCTTCAAGTGACTTAAGTGGTGCAATCTCATCGTGTTACTCTATGTCCAACTACAAAGACTGCTCCGCCTCTTCTTCCGGGAATCGGAGCCTTAATCTGAATCTTTCGATTGCTCTCTGCAGTAACTGA

Protein Analysis

284

Amino Acids

31.46

Weight (kDa)

8.52

Isoelectric Point (pI)

54.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 23 - 74 4.7e-08 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013661)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g35980
malus_domestica MD13G1013200.v1.1 MD16G1010100.v1.1
prunus_persica Prupe.1G340500_v2.0.a1 Prupe.1G340500_v2.0.a1
pyrus_communis pycom13g01120 pycom16g00990
rosa_chinensis RchiOBHm_Chr4g0445611
rosa_laevigata RLG00000005725
rosa_multiflora Rmu_ssc0000107.1_g000003
rosa_roxburghii Rroxscaffold_5G00386090
rosa_rugosa Rorug04G0363000
rosa_samantha Rh4AG424400 Rh4AG424800 Rh4BG436600 Rh4CG451200 Rh4DG433100
rosa_wichuraiana Rw4G036390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 61
AciI CCGC 3 cut(s) 396, 455, 789
AclWI GGATC 4 cut(s) 48, 188, 548, 561
AcsI RAATTY 2 cut(s) 445, 575
AcuI CTGAAG 3 cut(s) 89, 143, 549
AfaI GTAC 1 cut(s) 512
AfiI CCNNNNNNNGG 3 cut(s) 117, 136, 807
AflII CTTAAG 1 cut(s) 736
AgsI TTSAA 8 cut(s) 116, 287, 314, 404, 432, 574, 604, 729
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 2 cut(s) 254, 333
AluI AGCT 2 cut(s) 254, 333
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 413, 505
AlwI GGATC 4 cut(s) 48, 188, 548, 561
AlwNI CAGNNNCTG 1 cut(s) 849
AoxI GGCC 3 cut(s) 108, 127, 291
ApeKI GCWGC 5 cut(s) 96, 451, 457, 460, 474
ApoI RAATTY 2 cut(s) 445, 575
AspLEI GCGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 802
AsuHPI GGTGA 3 cut(s) 175, 551, 674
BaeGI GKGCMC 1 cut(s) 66
BamHI GGATCC 1 cut(s) 553
BanI GGYRCC 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 709, 741
BauI CACGAG 1 cut(s) 354
BbsI GAAGAC 1 cut(s) 253
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 5 cut(s) 83, 463, 469, 472, 486
BccI CCATC 6 cut(s) 69, 160, 213, 296, 349, 705
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 735, 769
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 1 cut(s) 802
BcoDI GTCTC 2 cut(s) 413, 505
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 841
BfrI CTTAAG 1 cut(s) 736
BisI GCNGC 6 cut(s) 97, 452, 455, 458, 461, 475
BlsI GCNGC 6 cut(s) 98, 453, 456, 459, 462, 476
Bme1390I CCNGG 2 cut(s) 379, 802
BmiI GGNNCC 3 cut(s) 63, 555, 812
BmrFI CCNGG 2 cut(s) 379, 802
BmsI GCATC 1 cut(s) 456
BpiI GAAGAC 1 cut(s) 253
BplI GAGNNNNNCTC 4 cut(s) 64, 96, 485, 517
BpmI CTGGAG 1 cut(s) 194
BpuMI CCSGG 1 cut(s) 802
BsaJI CCNNGG 4 cut(s) 57, 294, 377, 478
Bsc4I CCNNNNNNNGG 3 cut(s) 117, 136, 807
Bse118I RCCGGY 1 cut(s) 659
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 4 cut(s) 57, 294, 377, 478
BseGI GGATG 3 cut(s) 175, 304, 697
BseLI CCNNNNNNNGG 3 cut(s) 117, 136, 807
BseSI GKGCMC 1 cut(s) 66
BseXI GCAGC 5 cut(s) 83, 463, 469, 472, 486
BshFI GGCC 3 cut(s) 110, 129, 293
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 2 cut(s) 660, 801
BslFI GGGAC 1 cut(s) 667
BslI CCNNNNNNNGG 3 cut(s) 117, 136, 807
BsmAI GTCTC 2 cut(s) 413, 505
BsmBI CGTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 667
BsnI GGCC 3 cut(s) 110, 129, 293
Bsp1286I GDGCHC 2 cut(s) 66, 637
Bsp143I GATC 3 cut(s) 53, 180, 553
BspACI CCGC 3 cut(s) 396, 455, 789
BspANI GGCC 3 cut(s) 110, 129, 293
BspLI GGNNCC 3 cut(s) 63, 555, 812
BspMAI CTGCAG 1 cut(s) 845
BspPI GGATC 4 cut(s) 48, 188, 548, 561
BspQI GCTCTTC 1 cut(s) 625
BspT107I GGYRCC 1 cut(s) 61
BspTI CTTAAG 1 cut(s) 736
BsrFI RCCGGY 1 cut(s) 659
BssAI RCCGGY 1 cut(s) 659
BssECI CCNNGG 4 cut(s) 57, 294, 377, 478
BssMI GATC 3 cut(s) 53, 180, 553
BssSI CACGAG 1 cut(s) 354
BssT1I CCWWGG 2 cut(s) 57, 478
Bst2BI CACGAG 1 cut(s) 354
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 681
Bst6I CTCTTC 3 cut(s) 282, 625, 799
BstAFI CTTAAG 1 cut(s) 736
BstAPI GCANNNNNTGC 1 cut(s) 466
BstC8I GCNNGC 1 cut(s) 534
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 3 cut(s) 175, 304, 697
BstHHI GCGC 1 cut(s) 35
BstKTI GATC 3 cut(s) 56, 183, 556
BstMAI GTCTC 2 cut(s) 413, 505
BstMBI GATC 3 cut(s) 53, 180, 553
BstMWI GCNNNNNNNGC 6 cut(s) 231, 395, 457, 460, 466, 632
BstNI CCWGG 1 cut(s) 379
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 2 cut(s) 377, 800
BstSFI CTRYAG 1 cut(s) 841
BstSLI GKGCMC 1 cut(s) 66
BstV1I GCAGC 5 cut(s) 83, 463, 469, 472, 486
BstV2I GAAGAC 1 cut(s) 253
BstX2I RGATCY 2 cut(s) 53, 553
BstYI RGATCY 2 cut(s) 53, 553
BsuRI GGCC 3 cut(s) 110, 129, 293
BtgZI GCGATG 1 cut(s) 77
BtsCI GGATG 3 cut(s) 175, 304, 697
BtsI GCAGTG 1 cut(s) 25
BtsIMutI CAGTG 2 cut(s) 25, 677
Cac8I GCNNGC 1 cut(s) 534
CaiI CAGNNNCTG 1 cut(s) 849
CfoI GCGC 1 cut(s) 35
Cfr10I RCCGGY 1 cut(s) 659
Csp6I GTAC 1 cut(s) 511
CviAII CATG 3 cut(s) 194, 226, 638
CviQI GTAC 1 cut(s) 511
DpnI GATC 3 cut(s) 55, 182, 555
DpnII GATC 3 cut(s) 53, 180, 553
Eam1104I CTCTTC 3 cut(s) 282, 625, 799
EarI CTCTTC 3 cut(s) 282, 625, 799
EciI GGCGGA 1 cut(s) 778
Eco130I CCWWGG 2 cut(s) 57, 478
Eco57I CTGAAG 3 cut(s) 89, 143, 549
Eco91I GGTNACC 1 cut(s) 607
EcoO65I GGTNACC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 445
EcoRII CCWGG 1 cut(s) 377
EcoT14I CCWWGG 2 cut(s) 57, 478
ErhI CCWWGG 2 cut(s) 57, 478
Esp3I CGTCTC 1 cut(s) 413
FaeI CATG 3 cut(s) 197, 229, 641
FaqI GGGAC 1 cut(s) 667
FatI CATG 3 cut(s) 193, 225, 637
FauI CCCGC 1 cut(s) 403
Fnu4HI GCNGC 6 cut(s) 97, 452, 455, 458, 461, 475
FokI GGATG 3 cut(s) 182, 311, 684
Fsp4HI GCNGC 6 cut(s) 97, 452, 455, 458, 461, 475
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 34
GluI GCNGC 6 cut(s) 97, 452, 455, 458, 461, 475
GsuI CTGGAG 1 cut(s) 194
HaeIII GGCC 3 cut(s) 110, 129, 293
HapII CCGG 2 cut(s) 660, 801
HhaI GCGC 1 cut(s) 35
Hin1II CATG 3 cut(s) 197, 229, 641
Hin6I GCGC 1 cut(s) 33
HinP1I GCGC 1 cut(s) 33
HinfI GANTC 7 cut(s) 79, 361, 367, 373, 498, 805, 823
HpaII CCGG 2 cut(s) 660, 801
HphI GGTGA 3 cut(s) 175, 551, 674
Hpy188I TCNGA 6 cut(s) 125, 366, 372, 442, 810, 822
Hpy188III TCNNGA 3 cut(s) 83, 211, 601
Hpy99I CGWCG 1 cut(s) 653
HpyAV CCTTC 3 cut(s) 573, 580, 598
HpyCH4III ACNGT 1 cut(s) 681
HpyCH4V TGCA 7 cut(s) 18, 23, 262, 389, 474, 746, 843
HpyF10VI GCNNNNNNNGC 6 cut(s) 231, 395, 457, 460, 466, 632
Hsp92II CATG 3 cut(s) 197, 229, 641
HspAI GCGC 1 cut(s) 33
Kzo9I GATC 3 cut(s) 53, 180, 553
LguI GCTCTTC 1 cut(s) 625
LmnI GCTCC 2 cut(s) 791, 810
Lsp1109I GCAGC 5 cut(s) 83, 463, 469, 472, 486
LweI GCATC 1 cut(s) 456
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 5 cut(s) 607, 690, 731, 758, 845
MalI GATC 3 cut(s) 55, 182, 555
MboI GATC 3 cut(s) 53, 180, 553
MflI RGATCY 2 cut(s) 53, 553
MhlI GDGCHC 2 cut(s) 66, 637
MluCI AATT 3 cut(s) 445, 575, 671
MlyI GAGTC 2 cut(s) 73, 507
MmeI TCCRAC 1 cut(s) 795
MseI TTAA 3 cut(s) 198, 737, 816
MspCI CTTAAG 1 cut(s) 736
MspI CCGG 2 cut(s) 660, 801
MspR9I CCNGG 2 cut(s) 379, 802
MvaI CCWGG 1 cut(s) 379
MwoI GCNNNNNNNGC 6 cut(s) 231, 395, 457, 460, 466, 632
NciI CCSGG 1 cut(s) 802
NdeII GATC 3 cut(s) 53, 180, 553
NlaIII CATG 3 cut(s) 197, 229, 641
NlaIV GGNNCC 3 cut(s) 63, 555, 812
NmeAIII GCCGAG 1 cut(s) 319
NmuCI GTSAC 1 cut(s) 731
PciSI GCTCTTC 1 cut(s) 625
PfeI GAWTC 5 cut(s) 361, 367, 373, 805, 823
PfoI TCCNGGA 1 cut(s) 800
PkrI GCNGC 6 cut(s) 98, 453, 456, 459, 462, 476
PleI GAGTC 2 cut(s) 73, 506
PpsI GAGTC 2 cut(s) 73, 506
Psp6I CCWGG 1 cut(s) 377
PspEI GGTNACC 1 cut(s) 607
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 3 cut(s) 63, 555, 812
PstI CTGCAG 1 cut(s) 845
PstNI CAGNNNCTG 1 cut(s) 849
PsuI RGATCY 2 cut(s) 53, 553
RsaI GTAC 1 cut(s) 512
RsaNI GTAC 1 cut(s) 511
SapI GCTCTTC 1 cut(s) 625
SaqAI TTAA 3 cut(s) 198, 737, 816
SatI GCNGC 6 cut(s) 97, 452, 455, 458, 461, 475
Sau3AI GATC 3 cut(s) 53, 180, 553
SchI GAGTC 2 cut(s) 73, 507
ScrFI CCNGG 2 cut(s) 379, 802
SduI GDGCHC 2 cut(s) 66, 637
SetI ASST 5 cut(s) 63, 256, 335, 383, 609
SfaNI GCATC 1 cut(s) 456
SfcI CTRYAG 1 cut(s) 841
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
Sse9I AATT 3 cut(s) 445, 575, 671
SsiI CCGC 3 cut(s) 396, 455, 789
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 2 cut(s) 377, 800
StyI CCWWGG 2 cut(s) 57, 478
TaaI ACNGT 1 cut(s) 681
TaqI TCGA 1 cut(s) 830
TasI AATT 3 cut(s) 445, 575, 671
TauI GCSGC 1 cut(s) 457
TfiI GAWTC 5 cut(s) 361, 367, 373, 805, 823
Tru1I TTAA 3 cut(s) 198, 737, 816
Tru9I TTAA 3 cut(s) 198, 737, 816
TscAI CASTG 2 cut(s) 25, 684
TseFI GTSAC 1 cut(s) 731
TseI GCWGC 5 cut(s) 96, 451, 457, 460, 474
Tsp45I GTSAC 1 cut(s) 731
TspDTI ATGAA 3 cut(s) 80, 242, 669
TspGWI ACGGA 2 cut(s) 431, 498
TspRI CASTG 2 cut(s) 25, 684
Vha464I CTTAAG 1 cut(s) 736
XapI RAATTY 2 cut(s) 445, 575
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.