pycom13g01710

UDP-3-O- 3-hydroxymyristoyl N-acetylglucosamine deacetylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0008348
Physical Location & Seq
Reverse (-)
1134213 .. 1137346
3134 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 984 bp
ATGGGAACTCACACGAGAACTTCCCAGTGGGTCACCCATCGGGATTGCTGGGTCACCCATCCTGAGATTGCTCTCACCCGAACTCGCTTAACTTCAGAGTTCCGAAGCCAGCTTCAGCGGACCTTAGCGGGATGCATAGAGCGGAAAGGGATGAGCTTGCACAGCGGCAAGGTCTCTGCCGTGAAATTGTGGCCGGATCACGCCGGCAAAGGGAGATACTTTGTGTGCCGGTCAAATGCGATTCGAGCTTCGATTGAGTTTGCCGAGGAATCGCCTCTCTGCACCACTCTCTGTAAAGATGGGCTCAAAATTCGGACAGTTGAGCATTTGCTTTCGGCTTTGGAAGCTATGGAGGTTGATAATTGCCGGATAGAGATCAAGAACCCGGACCCCGAAGATATCGATGTTGAGGTTCCTATTTTTGATGGGTCAGCAAGAGAATGGGCGGAGGCTATAAAACAAGTTGGTCTAAAAGAGGCAACAGATGAGCAAGGCAACTGTTGTGAAAAGATGGCGGCACATATGAACGAACCAGTTCATGTCTGGAGGAATAATTCTTTTGTAGCTGCTTTCCCATCACCAGAAATCCGTATCACTTACGGTATTGACTTTCCGCAGGTGGATGCTATTGGCTGCCAATGGTTTTCTGTTACCTCCTTAGATAACTCTTTCTATTCCAAGCAGATTGCTTTGTCAAGAACCTTTTGCATTTACGAGGAGGTGGAGCAAATGCGCAAGGCAGGACTCATAAAAGGTGGTGGGTTAGAAAACGCAATTGTTTGCAGTGCTAGTAAAGGTTGGTTGAACCCACCGCTGCGTTTTCCAGATGAACCTTGTCGACACAAGGTCTTAGATCTTATCGGCGACCTTTCCCTTTTCGCAAGGTTTGGAAGCCAAGGGCTTCCAGTGGCACATATAGTGGCATACAAGGGTGGCCATGCACTGCATTCAGATTTGGTTCGCCGGCTGTCGGAAACTATATAA

Protein Analysis

328

Amino Acids

36.58

Weight (kDa)

6.46

Isoelectric Point (pI)

41.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LpxC PF03331 39 - 324 1.7e-82 UDP-3-O-acyl N-acetylglycosamine deacetylase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 607
Acc16I TGCGCA 1 cut(s) 734
Acc36I ACCTGC 1 cut(s) 607
AccBSI CCGCTC 1 cut(s) 142
AccI GTMKAC 1 cut(s) 838
AciI CCGC 8 cut(s) 118, 128, 142, 165, 446, 515, 614, 812
AclWI GGATC 1 cut(s) 204
AcoI YGGCCR 2 cut(s) 191, 934
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 2 cut(s) 78, 98
AfiI CCNNNNNNNGG 2 cut(s) 210, 970
AgsI TTSAA 1 cut(s) 805
AhdI GACNNNNNGTC 1 cut(s) 845
AluBI AGCT 5 cut(s) 112, 156, 248, 347, 566
AluI AGCT 5 cut(s) 112, 156, 248, 347, 566
Alw26I GTCTC 1 cut(s) 178
AlwI GGATC 1 cut(s) 204
AoxI GGCC 2 cut(s) 191, 934
ApeKI GCWGC 3 cut(s) 566, 633, 814
ApoI RAATTY 1 cut(s) 309
Asp700I GAANNNNTTC 1 cut(s) 534
AspLEI GCGC 1 cut(s) 735
AspS9I GGNCC 2 cut(s) 120, 388
AsuC2I CCSGG 1 cut(s) 386
AsuHPI GGTGA 4 cut(s) 25, 46, 67, 570
AvaII GGWCC 2 cut(s) 120, 388
BalI TGGCCA 1 cut(s) 936
BanII GRGCYC 1 cut(s) 306
BauI CACGAG 1 cut(s) 13
BbvI GCAGC 3 cut(s) 553, 620, 801
BccI CCATC 6 cut(s) 45, 66, 293, 419, 505, 583
BceAI ACGGC 1 cut(s) 164
BcnI CCSGG 1 cut(s) 386
BcoDI GTCTC 1 cut(s) 178
BfaI CTAG 1 cut(s) 789
BfuAI ACCTGC 1 cut(s) 607
BglII AGATCT 1 cut(s) 853
BisI GCNGC 5 cut(s) 166, 516, 567, 634, 815
BlsI GCNGC 5 cut(s) 167, 517, 568, 635, 816
Bme1390I CCNGG 1 cut(s) 386
Bme18I GGWCC 2 cut(s) 120, 388
BmeRI GACNNNNNGTC 1 cut(s) 845
BmgT120I GGNCC 2 cut(s) 120, 388
BmiI GGNNCC 2 cut(s) 390, 414
BmrFI CCNGG 1 cut(s) 386
BmrI ACTGGG 1 cut(s) 19
BmsI GCATC 2 cut(s) 122, 613
BmuI ACTGGG 1 cut(s) 19
BpmI CTGGAG 1 cut(s) 565
Bpu10I CCTNAGC 1 cut(s) 124
BpuMI CCSGG 1 cut(s) 386
Bsa29I ATCGAT 1 cut(s) 402
BsaBI GATNNNNATC 1 cut(s) 374
BsaI GGTCTC 1 cut(s) 178
BsaJI CCNNGG 2 cut(s) 264, 895
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 970
Bse118I RCCGGY 3 cut(s) 203, 228, 963
Bse1I ACTGG 3 cut(s) 25, 533, 905
Bse8I GATNNNNATC 1 cut(s) 374
BseCI ATCGAT 1 cut(s) 402
BseDI CCNNGG 2 cut(s) 264, 895
BseGI GGATG 4 cut(s) 58, 137, 156, 628
BseJI GATNNNNATC 1 cut(s) 374
BseLI CCNNNNNNNGG 2 cut(s) 210, 970
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 3 cut(s) 25, 533, 905
BseRI GAGGAG 1 cut(s) 731
BseXI GCAGC 3 cut(s) 553, 620, 801
BseYI CCCAGC 1 cut(s) 48
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 2 cut(s) 193, 936
BshVI ATCGAT 1 cut(s) 402
BsiSI CCGG 6 cut(s) 194, 204, 229, 367, 386, 964
BslI CCNNNNNNNGG 2 cut(s) 210, 970
BsmAI GTCTC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 946
BsnI GGCC 2 cut(s) 193, 936
Bso31I GGTCTC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 306
Bsp143I GATC 3 cut(s) 196, 375, 853
BspACI CCGC 8 cut(s) 118, 128, 142, 165, 446, 515, 614, 812
BspANI GGCC 2 cut(s) 193, 936
BspCNI CTCAG 1 cut(s) 55
BspDI ATCGAT 1 cut(s) 402
BspLI GGNNCC 2 cut(s) 390, 414
BspMI ACCTGC 1 cut(s) 607
BspPI GGATC 1 cut(s) 204
BspTNI GGTCTC 1 cut(s) 178
BsrBI CCGCTC 1 cut(s) 142
BsrFI RCCGGY 3 cut(s) 203, 228, 963
BsrI ACTGG 3 cut(s) 25, 533, 905
BssAI RCCGGY 3 cut(s) 203, 228, 963
BssECI CCNNGG 2 cut(s) 264, 895
BssMI GATC 3 cut(s) 196, 375, 853
BssSI CACGAG 1 cut(s) 13
BssT1I CCWWGG 1 cut(s) 895
Bst2BI CACGAG 1 cut(s) 13
Bst4CI ACNGT 3 cut(s) 319, 500, 602
BstC8I GCNNGC 4 cut(s) 110, 158, 205, 965
BstDEI CTNAG 4 cut(s) 63, 124, 658, 850
BstEII GGTNACC 2 cut(s) 31, 52
BstF5I GGATG 4 cut(s) 58, 137, 156, 628
BstHHI GCGC 1 cut(s) 735
BstKTI GATC 3 cut(s) 199, 378, 856
BstMAI GTCTC 1 cut(s) 178
BstMBI GATC 3 cut(s) 196, 375, 853
BstMWI GCNNNNNNNGC 3 cut(s) 162, 245, 344
BstPI GGTNACC 2 cut(s) 31, 52
BstSCI CCNGG 1 cut(s) 384
BstV1I GCAGC 3 cut(s) 553, 620, 801
BstX2I RGATCY 1 cut(s) 853
BstYI RGATCY 1 cut(s) 853
Bsu15I ATCGAT 1 cut(s) 402
BsuRI GGCC 2 cut(s) 193, 936
BsuTUI ATCGAT 1 cut(s) 402
BtsCI GGATG 4 cut(s) 58, 137, 156, 628
BtsI GCAGTG 2 cut(s) 790, 941
BtsIMutI CAGTG 4 cut(s) 32, 790, 912, 941
BveI ACCTGC 1 cut(s) 607
Cac8I GCNNGC 4 cut(s) 110, 158, 205, 965
CfoI GCGC 1 cut(s) 735
Cfr10I RCCGGY 3 cut(s) 203, 228, 963
Cfr13I GGNCC 2 cut(s) 120, 388
ClaI ATCGAT 1 cut(s) 402
CviAII CATG 2 cut(s) 539, 938
DdeI CTNAG 4 cut(s) 63, 124, 658, 850
DpnI GATC 3 cut(s) 198, 377, 855
DpnII GATC 3 cut(s) 196, 375, 853
DriI GACNNNNNGTC 1 cut(s) 845
EaeI YGGCCR 2 cut(s) 191, 934
Eam1105I GACNNNNNGTC 1 cut(s) 845
EciI GGCGGA 1 cut(s) 461
Eco130I CCWWGG 1 cut(s) 895
Eco24I GRGCYC 1 cut(s) 306
Eco31I GGTCTC 1 cut(s) 178
Eco32I GATATC 1 cut(s) 400
Eco47I GGWCC 2 cut(s) 120, 388
Eco57I CTGAAG 2 cut(s) 78, 98
Eco91I GGTNACC 2 cut(s) 31, 52
EcoO65I GGTNACC 2 cut(s) 31, 52
EcoRV GATATC 1 cut(s) 400
EcoT14I CCWWGG 1 cut(s) 895
EcoT22I ATGCAT 1 cut(s) 137
EcoT38I GRGCYC 1 cut(s) 306
ErhI CCWWGG 1 cut(s) 895
FaeI CATG 2 cut(s) 542, 941
FatI CATG 2 cut(s) 538, 937
FauI CCCGC 1 cut(s) 121
FauNDI CATATG 1 cut(s) 522
FblI GTMKAC 1 cut(s) 838
Fnu4HI GCNGC 5 cut(s) 166, 516, 567, 634, 815
FokI GGATG 4 cut(s) 45, 144, 163, 635
FriOI GRGCYC 1 cut(s) 306
Fsp4HI GCNGC 5 cut(s) 166, 516, 567, 634, 815
FspBI CTAG 1 cut(s) 789
FspI TGCGCA 1 cut(s) 734
GlaI GCGC 1 cut(s) 734
GluI GCNGC 5 cut(s) 166, 516, 567, 634, 815
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 565
HaeIII GGCC 2 cut(s) 193, 936
HapII CCGG 6 cut(s) 194, 204, 229, 367, 386, 964
HhaI GCGC 1 cut(s) 735
Hin1II CATG 2 cut(s) 542, 941
Hin6I GCGC 1 cut(s) 733
HinP1I GCGC 1 cut(s) 733
HincII GTYRAC 1 cut(s) 839
HindII GTYRAC 1 cut(s) 839
HinfI GANTC 3 cut(s) 241, 269, 744
HpaII CCGG 6 cut(s) 194, 204, 229, 367, 386, 964
HphI GGTGA 4 cut(s) 25, 46, 67, 570
Hpy166II GTNNAC 1 cut(s) 839
Hpy188I TCNGA 5 cut(s) 97, 104, 315, 952, 973
Hpy188III TCNNGA 6 cut(s) 41, 62, 379, 544, 696, 824
Hpy8I GTNNAC 1 cut(s) 839
HpyCH4III ACNGT 3 cut(s) 319, 500, 602
HpyCH4V TGCA 7 cut(s) 135, 160, 282, 708, 783, 941, 946
HpyF10VI GCNNNNNNNGC 3 cut(s) 162, 245, 344
HpyF3I CTNAG 4 cut(s) 63, 124, 658, 850
Hsp92II CATG 2 cut(s) 542, 941
HspAI GCGC 1 cut(s) 733
KroI GCCGGC 2 cut(s) 203, 963
KroNI GCCGGC 2 cut(s) 205, 965
Kzo9I GATC 3 cut(s) 196, 375, 853
LmnI GCTCC 1 cut(s) 724
Lsp1109I GCAGC 3 cut(s) 553, 620, 801
LweI GCATC 2 cut(s) 122, 613
MaeI CTAG 1 cut(s) 789
MaeIII GTNAC 3 cut(s) 31, 52, 649
MalI GATC 3 cut(s) 198, 377, 855
MbiI CCGCTC 1 cut(s) 142
MboI GATC 3 cut(s) 196, 375, 853
MboII GAAGA 1 cut(s) 407
MfeI CAATTG 1 cut(s) 774
MflI RGATCY 1 cut(s) 853
MhlI GDGCHC 1 cut(s) 306
MlsI TGGCCA 1 cut(s) 936
MluCI AATT 5 cut(s) 185, 309, 361, 553, 774
MluNI TGGCCA 1 cut(s) 936
MlyI GAGTC 1 cut(s) 738
MmeI TCCRAC 1 cut(s) 951
Mox20I TGGCCA 1 cut(s) 936
Mph1103I ATGCAT 1 cut(s) 137
MroNI GCCGGC 2 cut(s) 203, 963
MroXI GAANNNNTTC 1 cut(s) 534
MscI TGGCCA 1 cut(s) 936
MseI TTAA 1 cut(s) 89
Msp20I TGGCCA 1 cut(s) 936
MspA1I CMGCKG 3 cut(s) 118, 165, 814
MspI CCGG 6 cut(s) 194, 204, 229, 367, 386, 964
MspR9I CCNGG 1 cut(s) 386
MunI CAATTG 1 cut(s) 774
Mva1269I GAATGC 1 cut(s) 946
MwoI GCNNNNNNNGC 3 cut(s) 162, 245, 344
NaeI GCCGGC 2 cut(s) 205, 965
NciI CCSGG 1 cut(s) 386
NdeI CATATG 1 cut(s) 522
NdeII GATC 3 cut(s) 196, 375, 853
NgoMIV GCCGGC 2 cut(s) 203, 963
NlaIII CATG 2 cut(s) 542, 941
NlaIV GGNNCC 2 cut(s) 390, 414
NmeAIII GCCGAG 1 cut(s) 289
NmuCI GTSAC 2 cut(s) 31, 52
NsbI TGCGCA 1 cut(s) 734
NsiI ATGCAT 1 cut(s) 137
PaqCI CACCTGC 1 cut(s) 607
PctI GAATGC 1 cut(s) 946
PdiI GCCGGC 2 cut(s) 205, 965
PdmI GAANNNNTTC 1 cut(s) 534
PfeI GAWTC 2 cut(s) 241, 269
PkrI GCNGC 5 cut(s) 167, 517, 568, 635, 816
PleI GAGTC 1 cut(s) 738
PpsI GAGTC 1 cut(s) 738
PspEI GGTNACC 2 cut(s) 31, 52
PspFI CCCAGC 1 cut(s) 48
PspN4I GGNNCC 2 cut(s) 390, 414
PspPI GGNCC 2 cut(s) 120, 388
PsuI RGATCY 1 cut(s) 853
SalI GTCGAC 1 cut(s) 837
SaqAI TTAA 1 cut(s) 89
SatI GCNGC 5 cut(s) 166, 516, 567, 634, 815
Sau3AI GATC 3 cut(s) 196, 375, 853
Sau96I GGNCC 2 cut(s) 120, 388
SchI GAGTC 1 cut(s) 738
ScrFI CCNGG 1 cut(s) 386
SduI GDGCHC 1 cut(s) 306
SfaNI GCATC 2 cut(s) 122, 613
SinI GGWCC 2 cut(s) 120, 388
Sse9I AATT 5 cut(s) 185, 309, 361, 553, 774
SsiI CCGC 8 cut(s) 118, 128, 142, 165, 446, 515, 614, 812
SspMI CTAG 1 cut(s) 789
StyD4I CCNGG 1 cut(s) 384
StyI CCWWGG 1 cut(s) 895
TaaI ACNGT 3 cut(s) 319, 500, 602
TaqI TCGA 4 cut(s) 244, 251, 402, 838
TasI AATT 5 cut(s) 185, 309, 361, 553, 774
TauI GCSGC 2 cut(s) 168, 518
TfiI GAWTC 2 cut(s) 241, 269
Tru1I TTAA 1 cut(s) 89
Tru9I TTAA 1 cut(s) 89
TscAI CASTG 4 cut(s) 32, 790, 912, 948
TseFI GTSAC 2 cut(s) 31, 52
TseI GCWGC 3 cut(s) 566, 633, 814
Tsp45I GTSAC 2 cut(s) 31, 52
TspDTI ATGAA 3 cut(s) 527, 539, 843
TspGWI ACGGA 1 cut(s) 578
TspRI CASTG 4 cut(s) 32, 790, 912, 948
VpaK11BI GGWCC 2 cut(s) 120, 388
XapI RAATTY 1 cut(s) 309
XcmI CCANNNNNNNNNTGG 1 cut(s) 540
XmiI GTMKAC 1 cut(s) 838
XmnI GAANNNNTTC 1 cut(s) 534
XspI CTAG 1 cut(s) 789
Zsp2I ATGCAT 1 cut(s) 137
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.