Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007800

Physical Location & Seq

Genomic Coordinates Reverse (-)

1663700 .. 1664146

Gene Structure 447 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGCGATCAAAATGCAGTATGGCACGAAACATCCCATGGTTCTAATAATCATGCTCCTTTTGATTGCCTACGTAGTAGGCCCAGTCTATGCCGATGAAACCCCAGGCGCTCCCGGCGAGGAAAAGTGCGACTCGTGCACTCCAAGCCCACCACCGCCGGTTCCATCCCCACCACCACCATCAGCGTGTCCTCCTCCACCAGCGCCTCCACCACCATCACCGTGTCCTCCTCCACCAGCACCACCGTCACCCCCGCCTTCTCCCAAGCTGCCACCGTGCGGCCCATGCGGTCAATACGCGCCTCCACCGCCGTCAACGCTGACATACATCACCGGTCCGCCGGGACAGTTGTACCCTATCGAACAGAATTTCAACGGTGCCAGTCGGAGTTCGGTCAACACGTTACCGGTTTTGCTTGGGCTGCTGGGTCTCCTGGCTTTTTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

149

Amino Acids

15.26

Weight (kDa)

5.59

Isoelectric Point (pI)

98.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007800)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G02405 AT1G23040 AT1G23040 AT1G23040 AT1G70990
fragaria_vesca	FvH4_4g32400
malus_domestica	MD13G1025500.v1.1
prunus_persica	Prupe.1G324400_v2.0.a1
pyrus_communis	pycom13g02420
rosa_chinensis	RchiOBHm_Chr4g0441241 RchiOBHm_Chr4g0441251
rosa_laevigata	RLG00000006107 RLG00000006108
rosa_multiflora	Rmu_sc0012909.1_g000011
rosa_roxburghii	Rroxscaffold_5G00382150
rosa_rugosa	Rorug04G0331800
rosa_samantha	Rh4AG383600 Rh4AG383700 Rh4BG397700 Rh4CG412900 Rh4DG390400 Rh4DG390500
rosa_wichuraiana	Rw4G033100 Rw4G033110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AccII	CGCG	1 cut(s)	299
AciI	CCGC	6 cut(s)	155, 254, 279, 288, 308, 338
AcsI	RAATTY	1 cut(s)	367
AfaI	GTAC	1 cut(s)	353
AfiI	CCNNNNNNNGG	1 cut(s)	278
AflIII	ACRYGT	1 cut(s)	399
AgeI	ACCGGT	2 cut(s)	332, 406
AgsI	TTSAA	1 cut(s)	373
AjnI	CCWGG	2 cut(s)	103, 432
AluBI	AGCT	1 cut(s)	268
AluI	AGCT	1 cut(s)	268
Alw21I	GWGCWC	1 cut(s)	140
Alw26I	GTCTC	1 cut(s)	434
Alw44I	GTGCAC	1 cut(s)	136
AoxI	GGCC	2 cut(s)	79, 280
ApaLI	GTGCAC	1 cut(s)	136
ApeKI	GCWGC	2 cut(s)	268, 421
ApoI	RAATTY	1 cut(s)	367
AsiGI	ACCGGT	2 cut(s)	332, 406
AspLEI	GCGC	3 cut(s)	110, 205, 301
AspS9I	GGNCC	3 cut(s)	80, 281, 335
AsuC2I	CCSGG	2 cut(s)	114, 342
AsuHPI	GGTGA	3 cut(s)	210, 240, 322
AvaII	GGWCC	1 cut(s)	335
BaeGI	GKGCMC	1 cut(s)	140
BaeI	ACNNNNGTAYC	2 cut(s)	335, 368
BanI	GGYRCC	1 cut(s)	377
BauI	CACGAG	1 cut(s)	133
Bbv12I	GWGCWC	1 cut(s)	140
BbvI	GCAGC	2 cut(s)	255, 408
BccI	CCATC	3 cut(s)	172, 187, 223
BceAI	ACGGC	1 cut(s)	295
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	105, 434
BcnI	CCSGG	2 cut(s)	114, 342
BcoDI	GTCTC	1 cut(s)	434
BfoI	RGCGCY	2 cut(s)	111, 206
BisI	GCNGC	3 cut(s)	269, 280, 422
BlsI	GCNGC	3 cut(s)	270, 281, 423
Bme1390I	CCNGG	4 cut(s)	105, 114, 342, 434
Bme18I	GGWCC	1 cut(s)	335
BmgT120I	GGNCC	3 cut(s)	80, 281, 335
BmiI	GGNNCC	2 cut(s)	162, 379
BmrFI	CCNGG	4 cut(s)	105, 114, 342, 434
BmrI	ACTGGG	1 cut(s)	77
BmuI	ACTGGG	1 cut(s)	77
BpuMI	CCSGG	2 cut(s)	114, 342
BsaAI	YACGTR	1 cut(s)	73
BsaI	GGTCTC	1 cut(s)	434
BsaJI	CCNNGG	2 cut(s)	36, 103
BsaWI	WCCGGW	2 cut(s)	332, 406
Bsc4I	CCNNNNNNNGG	1 cut(s)	278
Bse118I	RCCGGY	3 cut(s)	157, 332, 406
Bse1I	ACTGG	2 cut(s)	83, 381
BseBI	CCWGG	2 cut(s)	105, 434
BseDI	CCNNGG	2 cut(s)	36, 103
BseGI	GGATG	2 cut(s)	31, 164
BseLI	CCNNNNNNNGG	1 cut(s)	278
BseNI	ACTGG	2 cut(s)	83, 381
BseRI	GAGGAG	2 cut(s)	183, 219
BseSI	GKGCMC	1 cut(s)	140
BseXI	GCAGC	2 cut(s)	255, 408
BseYI	CCCAGC	1 cut(s)	424
Bsh1236I	CGCG	1 cut(s)	299
BshFI	GGCC	2 cut(s)	81, 282
BshNI	GGYRCC	1 cut(s)	377
BshTI	ACCGGT	2 cut(s)	332, 406
BsiHKAI	GWGCWC	1 cut(s)	140
BsiSI	CCGG	5 cut(s)	114, 158, 333, 341, 407
BslFI	GGGAC	1 cut(s)	357
BslI	CCNNNNNNNGG	1 cut(s)	278
BsmAI	GTCTC	1 cut(s)	434
BsmFI	GGGAC	1 cut(s)	357
BsnI	GGCC	2 cut(s)	81, 282
Bso31I	GGTCTC	1 cut(s)	434
Bsp1286I	GDGCHC	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	6
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	6 cut(s)	155, 254, 279, 288, 308, 338
BspANI	GGCC	2 cut(s)	81, 282
BspFNI	CGCG	1 cut(s)	299
BspLI	GGNNCC	2 cut(s)	162, 379
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	434
BsrFI	RCCGGY	3 cut(s)	157, 332, 406
BsrI	ACTGG	2 cut(s)	83, 381
BssAI	RCCGGY	3 cut(s)	157, 332, 406
BssECI	CCNNGG	2 cut(s)	36, 103
BssMI	GATC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	133
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	105, 434
Bst4CI	ACNGT	5 cut(s)	222, 246, 276, 348, 377
BstBAI	YACGTR	1 cut(s)	73
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	31, 164
BstFNI	CGCG	1 cut(s)	299
BstH2I	RGCGCY	2 cut(s)	111, 206
BstHHI	GCGC	3 cut(s)	110, 205, 301
BstKTI	GATC	1 cut(s)	9
BstMAI	GTCTC	1 cut(s)	434
BstMBI	GATC	1 cut(s)	6
BstMWI	GCNNNNNNNGC	7 cut(s)	114, 135, 144, 285, 307, 316, 421
BstNI	CCWGG	2 cut(s)	105, 434
BstSCI	CCNGG	4 cut(s)	103, 112, 340, 432
BstSLI	GKGCMC	1 cut(s)	140
BstSNI	TACGTA	1 cut(s)	73
BstUI	CGCG	1 cut(s)	299
BstV1I	GCAGC	2 cut(s)	255, 408
BsuRI	GGCC	2 cut(s)	81, 282
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	31, 164
CfoI	GCGC	3 cut(s)	110, 205, 301
Cfr10I	RCCGGY	3 cut(s)	157, 332, 406
Cfr13I	GGNCC	3 cut(s)	80, 281, 335
CpoI	CGGWCCG	1 cut(s)	335
Csp6I	GTAC	1 cut(s)	352
CspAI	ACCGGT	2 cut(s)	332, 406
CspI	CGGWCCG	1 cut(s)	335
CviAII	CATG	3 cut(s)	37, 52, 285
CviJI	RGCY	6 cut(s)	81, 147, 268, 282, 421, 437
CviKI_1	RGCY	6 cut(s)	81, 147, 268, 282, 421, 437
CviQI	GTAC	1 cut(s)	352
DpnI	GATC	1 cut(s)	8
DpnII	GATC	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	327
Eco105I	TACGTA	1 cut(s)	73
Eco130I	CCWWGG	1 cut(s)	36
Eco31I	GGTCTC	1 cut(s)	434
Eco47I	GGWCC	1 cut(s)	335
EcoRII	CCWGG	2 cut(s)	103, 432
EcoT14I	CCWWGG	1 cut(s)	36
ErhI	CCWWGG	1 cut(s)	36
FaeI	CATG	3 cut(s)	40, 55, 288
FaiI	YATR	6 cut(s)	21, 38, 53, 90, 286, 325
FaqI	GGGAC	1 cut(s)	357
FatI	CATG	3 cut(s)	36, 51, 284
FauI	CCCGC	1 cut(s)	261
Fnu4HI	GCNGC	3 cut(s)	269, 280, 422
FokI	GGATG	2 cut(s)	18, 151
Fsp4HI	GCNGC	3 cut(s)	269, 280, 422
GlaI	GCGC	3 cut(s)	109, 204, 300
GluI	GCNGC	3 cut(s)	269, 280, 422
GsaI	CCCAGC	1 cut(s)	428
HaeII	RGCGCY	2 cut(s)	111, 206
HaeIII	GGCC	2 cut(s)	81, 282
HapII	CCGG	5 cut(s)	114, 158, 333, 341, 407
HhaI	GCGC	3 cut(s)	110, 205, 301
Hin1II	CATG	3 cut(s)	40, 55, 288
Hin6I	GCGC	3 cut(s)	108, 203, 299
HinP1I	GCGC	3 cut(s)	108, 203, 299
HincII	GTYRAC	2 cut(s)	315, 397
HindII	GTYRAC	2 cut(s)	315, 397
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	5 cut(s)	114, 158, 333, 341, 407
HphI	GGTGA	3 cut(s)	210, 240, 322
Hpy166II	GTNNAC	3 cut(s)	138, 315, 397
Hpy188I	TCNGA	1 cut(s)	387
Hpy8I	GTNNAC	3 cut(s)	138, 315, 397
HpyAV	CCTTC	1 cut(s)	267
HpyCH4III	ACNGT	5 cut(s)	222, 246, 276, 348, 377
HpyCH4IV	ACGT	2 cut(s)	72, 401
HpyCH4V	TGCA	2 cut(s)	16, 138
HpyF10VI	GCNNNNNNNGC	7 cut(s)	114, 135, 144, 285, 307, 316, 421
HpySE526I	ACGT	2 cut(s)	72, 401
Hsp92II	CATG	3 cut(s)	40, 55, 288
HspAI	GCGC	3 cut(s)	108, 203, 299
Kzo9I	GATC	1 cut(s)	6
LmnI	GCTCC	2 cut(s)	60, 115
Lsp1109I	GCAGC	2 cut(s)	255, 408
MaeII	ACGT	2 cut(s)	72, 401
MaeIII	GTNAC	2 cut(s)	246, 402
MalI	GATC	1 cut(s)	8
MboI	GATC	1 cut(s)	6
MhlI	GDGCHC	1 cut(s)	140
MluCI	AATT	1 cut(s)	367
MlyI	GAGTC	1 cut(s)	125
MmeI	TCCRAC	1 cut(s)	365
MnlI	CCTC	7 cut(s)	112, 201, 204, 216, 237, 240, 312
MslI	CAYNNNNRTG	2 cut(s)	184, 220
MspI	CCGG	5 cut(s)	114, 158, 333, 341, 407
MspR9I	CCNGG	4 cut(s)	105, 114, 342, 434
MvaI	CCWGG	2 cut(s)	105, 434
MvnI	CGCG	1 cut(s)	299
MwoI	GCNNNNNNNGC	7 cut(s)	114, 135, 144, 285, 307, 316, 421
NciI	CCSGG	2 cut(s)	114, 342
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	6
NlaIII	CATG	3 cut(s)	40, 55, 288
NlaIV	GGNNCC	2 cut(s)	162, 379
NmuCI	GTSAC	1 cut(s)	246
PcsI	WCGNNNNNNNCGW	1 cut(s)	398
PinAI	ACCGGT	2 cut(s)	332, 406
PkrI	GCNGC	3 cut(s)	270, 281, 423
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
Ppu21I	YACGTR	1 cut(s)	73
Psp6I	CCWGG	2 cut(s)	103, 432
PspFI	CCCAGC	1 cut(s)	424
PspGI	CCWGG	2 cut(s)	103, 432
PspN4I	GGNNCC	2 cut(s)	162, 379
PspPI	GGNCC	3 cut(s)	80, 281, 335
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	2 cut(s)	184, 220
Rsr2I	CGGWCCG	1 cut(s)	335
RsrII	CGGWCCG	1 cut(s)	335
SatI	GCNGC	3 cut(s)	269, 280, 422
Sau3AI	GATC	1 cut(s)	6
Sau96I	GGNCC	3 cut(s)	80, 281, 335
SchI	GAGTC	1 cut(s)	125
ScrFI	CCNGG	4 cut(s)	105, 114, 342, 434
SduI	GDGCHC	1 cut(s)	140
SetI	ASST	3 cut(s)	75, 270, 404
SinI	GGWCC	1 cut(s)	335
SmiMI	CAYNNNNRTG	2 cut(s)	184, 220
SnaBI	TACGTA	1 cut(s)	73
Sse9I	AATT	1 cut(s)	367
SsiI	CCGC	6 cut(s)	155, 254, 279, 288, 308, 338
StyD4I	CCNGG	4 cut(s)	103, 112, 340, 432
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	5 cut(s)	222, 246, 276, 348, 377
TaiI	ACGT	2 cut(s)	75, 404
TaqI	TCGA	1 cut(s)	360
TaqII	GACCGA	1 cut(s)	382
TasI	AATT	1 cut(s)	367
TauI	GCSGC	1 cut(s)	282
TseFI	GTSAC	1 cut(s)	246
TseI	GCWGC	2 cut(s)	268, 421
Tsp45I	GTSAC	1 cut(s)	246
TspDTI	ATGAA	1 cut(s)	111
VneI	GTGCAC	1 cut(s)	136
VpaK11BI	GGWCC	1 cut(s)	335
XapI	RAATTY	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.