pycom13g03030

Lipid phosphate phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009769
Physical Location & Seq
Reverse (-)
2064524 .. 2066314
1791 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 918 bp
ATGCATGATTGGCTGATTCTGTTGGTTCTCGCCGGGATTGATCTCGGTTTGAACTTGATAGAACCGTTTCACCGCTTTGTTGGGGAGGACATGATGACAGACCTGAGTTACCCTTTGAAAGACAATACAGTTCCCTTCTGGGCTGTTCCGATAATTGCGGTATTGTTGCCGCTTGTTGTCATTCTTCTGTACTACTTCATCCGAAAGGATGTCTATGATCTGCACCATGCCAGTTTGGGCCTTCTATTCTCTGTCTTCATAACCGCTGTTTTAACTGATGCGATCAAAGATGGTGTTGGTCGACCTCGTCCAGACTTCTTTTGGCGTTGTTTTCCTGATGGAAAAGGGGTATTTGATCAGACCACAAAGGATGTCATATGTACTGGAATCAAGAGTGTCATTAAGGAAGGGCATAAAAGCTTCCCAAGCGGGCATACTTCATGGTCCTTTGCAGGTCTTGGTTTCCTTGCATGGTACTTATCGGGGAAAGTTAGGGTGTTTGATCGTAGGGGACATGTTGCAAAGCTCTGTATTGTCATTTTACCACTACTTACTGCAGCGCTGGTGGCAGTTTCTCGAGTTGATGACTATTGGCATCATTGGCAAGATGTTTTTGCTGGCGGGCTTATAGGAATCACCATTGCTTCATTTTGTTACCTGCAATTCTTTCCACCTCCATATGAAACAGATGGTTGGGGACCGCACGCATACTTTCAGATGCTGGCAGAGTCTCAAAATCGCGACGAGTCCTTGACTAACAACGCCAACAGTCTTTGTGTGCAGCCAACAGAGCTTACGAGTGTATACATCGAACCTCAGAACGGTGTTGAATTGTCAAGAGGCAATAGCGGAGACAGAAACGCCATGCTAAATGGAAGGGAAAACGGGAGAAGACAGCACAGTGTCGGGTGTTTGTAG

Protein Analysis

306

Amino Acids

34.2

Weight (kDa)

6.1

Isoelectric Point (pI)

32.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP2 PF01569 79 - 223 1.9e-29 PAP2 superfamily
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 443, 666
AccI GTMKAC 2 cut(s) 301, 804
AccII CGCG 1 cut(s) 741
AciI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 701, 849
AfaI GTAC 3 cut(s) 191, 382, 476
AfeI AGCGCT 1 cut(s) 561
AfiI CCNNNNNNNGG 1 cut(s) 821
AflIII ACRYGT 1 cut(s) 514
AgsI TTSAA 3 cut(s) 52, 118, 830
AluBI AGCT 3 cut(s) 420, 526, 793
AluI AGCT 3 cut(s) 420, 526, 793
Alw26I GTCTC 2 cut(s) 735, 846
AlwNI CAGNNNCTG 1 cut(s) 721
Ama87I CYCGRG 1 cut(s) 576
Aor51HI AGCGCT 1 cut(s) 561
AoxI GGCC 1 cut(s) 238
ApeKI GCWGC 2 cut(s) 557, 781
Asp700I GAANNNNTTC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 562
AspS9I GGNCC 3 cut(s) 238, 444, 698
AsuC2I CCSGG 1 cut(s) 34
AsuHPI GGTGA 2 cut(s) 62, 628
AvaI CYCGRG 1 cut(s) 576
AvaII GGWCC 2 cut(s) 444, 698
BbsI GAAGAC 2 cut(s) 247, 898
BbvI GCAGC 2 cut(s) 569, 793
BccI CCATC 3 cut(s) 284, 332, 683
BclI TGATCA 1 cut(s) 355
BcnI CCSGG 1 cut(s) 34
BcoDI GTCTC 2 cut(s) 735, 846
BfmI CTRYAG 1 cut(s) 555
BfoI RGCGCY 1 cut(s) 563
BfuAI ACCTGC 2 cut(s) 443, 666
BisI GCNGC 3 cut(s) 170, 558, 782
BlsI GCNGC 3 cut(s) 171, 559, 783
Bme1390I CCNGG 1 cut(s) 34
Bme18I GGWCC 2 cut(s) 444, 698
BmeT110I CYCGRG 1 cut(s) 576
BmgT120I GGNCC 3 cut(s) 238, 444, 698
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 34
BmsI GCATC 3 cut(s) 268, 604, 708
BpiI GAAGAC 2 cut(s) 247, 898
BpuMI CCSGG 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 821
Bse1I ACTGG 2 cut(s) 231, 388
Bse3DI GCAATG 1 cut(s) 639
BseGI GGATG 3 cut(s) 198, 214, 376
BseLI CCNNNNNNNGG 1 cut(s) 821
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 2 cut(s) 95, 830
BseNI ACTGG 2 cut(s) 231, 388
BseXI GCAGC 2 cut(s) 569, 793
BsgI GTGCAG 2 cut(s) 206, 800
Bsh1236I CGCG 1 cut(s) 741
BshFI GGCC 1 cut(s) 240
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 1 cut(s) 33
BslFI GGGAC 2 cut(s) 525, 711
BslI CCNNNNNNNGG 1 cut(s) 821
BsmAI GTCTC 2 cut(s) 735, 846
BsmFI GGGAC 2 cut(s) 525, 711
BsnI GGCC 1 cut(s) 240
BsoBI CYCGRG 1 cut(s) 576
Bsp143I GATC 5 cut(s) 40, 217, 282, 355, 502
Bsp68I TCGCGA 1 cut(s) 741
BspACI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 701, 849
BspANI GGCC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 96, 829
BspFNI CGCG 1 cut(s) 741
BspLI GGNNCC 1 cut(s) 699
BspMAI CTGCAG 1 cut(s) 559
BspMI ACCTGC 2 cut(s) 443, 666
BsrDI GCAATG 1 cut(s) 639
BsrI ACTGG 2 cut(s) 231, 388
BssMI GATC 5 cut(s) 40, 217, 282, 355, 502
BssNAI GTATAC 1 cut(s) 805
Bst1107I GTATAC 1 cut(s) 805
Bst4CI ACNGT 5 cut(s) 66, 130, 770, 824, 902
BstC8I GCNNGC 5 cut(s) 431, 619, 623, 705, 723
BstDEI CTNAG 2 cut(s) 104, 816
BstF5I GGATG 3 cut(s) 198, 214, 376
BstFNI CGCG 1 cut(s) 741
BstH2I RGCGCY 1 cut(s) 563
BstHHI GCGC 1 cut(s) 562
BstKTI GATC 5 cut(s) 43, 220, 285, 358, 505
BstMAI GTCTC 2 cut(s) 735, 846
BstMBI GATC 5 cut(s) 40, 217, 282, 355, 502
BstMWI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
BstNSI RCATGY 1 cut(s) 518
BstSCI CCNGG 1 cut(s) 32
BstSFI CTRYAG 1 cut(s) 555
BstUI CGCG 1 cut(s) 741
BstV1I GCAGC 2 cut(s) 569, 793
BstV2I GAAGAC 2 cut(s) 247, 898
BstZ17I GTATAC 1 cut(s) 805
BsuRI GGCC 1 cut(s) 240
BtsCI GGATG 3 cut(s) 198, 214, 376
BtsIMutI CAGTG 1 cut(s) 907
BtuMI TCGCGA 1 cut(s) 741
BveI ACCTGC 2 cut(s) 443, 666
Cac8I GCNNGC 5 cut(s) 431, 619, 623, 705, 723
CaiI CAGNNNCTG 1 cut(s) 721
CfoI GCGC 1 cut(s) 562
Cfr13I GGNCC 3 cut(s) 238, 444, 698
Csp6I GTAC 3 cut(s) 190, 381, 475
CviAII CATG 7 cut(s) 5, 91, 227, 441, 471, 515, 865
CviJI RGCY 8 cut(s) 13, 143, 240, 420, 526, 625, 784, 793
CviKI_1 RGCY 8 cut(s) 13, 143, 240, 420, 526, 625, 784, 793
CviQI GTAC 3 cut(s) 190, 381, 475
DdeI CTNAG 2 cut(s) 104, 816
DpnI GATC 5 cut(s) 42, 219, 284, 357, 504
DpnII GATC 5 cut(s) 40, 217, 282, 355, 502
Eco47I GGWCC 2 cut(s) 444, 698
Eco47III AGCGCT 1 cut(s) 561
Eco88I CYCGRG 1 cut(s) 576
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
FaqI GGGAC 2 cut(s) 525, 711
FatI CATG 7 cut(s) 4, 90, 226, 440, 470, 514, 864
FauI CCCGC 2 cut(s) 422, 614
FauNDI CATATG 2 cut(s) 377, 679
FbaI TGATCA 1 cut(s) 355
FblI GTMKAC 2 cut(s) 301, 804
Fnu4HI GCNGC 3 cut(s) 170, 558, 782
FokI GGATG 3 cut(s) 185, 221, 383
Fsp4HI GCNGC 3 cut(s) 170, 558, 782
GlaI GCGC 1 cut(s) 561
GluI GCNGC 3 cut(s) 170, 558, 782
HaeII RGCGCY 1 cut(s) 563
HaeIII GGCC 1 cut(s) 240
HapII CCGG 1 cut(s) 33
HhaI GCGC 1 cut(s) 562
Hin1II CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
Hin6I GCGC 1 cut(s) 560
HinP1I GCGC 1 cut(s) 560
HincII GTYRAC 1 cut(s) 302
HindII GTYRAC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 418
HinfI GANTC 5 cut(s) 16, 387, 633, 728, 746
HpaII CCGG 1 cut(s) 33
HphI GGTGA 2 cut(s) 62, 628
Hpy166II GTNNAC 2 cut(s) 302, 805
Hpy188I TCNGA 5 cut(s) 150, 203, 360, 717, 819
Hpy188III TCNNGA 6 cut(s) 311, 335, 391, 576, 740, 837
Hpy8I GTNNAC 2 cut(s) 302, 805
Hpy99I CGWCG 1 cut(s) 746
HpyAV CCTTC 4 cut(s) 145, 251, 401, 870
HpyCH4III ACNGT 5 cut(s) 66, 130, 770, 824, 902
HpyCH4V TGCA 8 cut(s) 4, 223, 452, 470, 521, 557, 661, 781
HpyF10VI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
HpyF3I CTNAG 2 cut(s) 104, 816
Hsp92II CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
HspAI GCGC 1 cut(s) 560
Ksp22I TGATCA 1 cut(s) 355
Kzo9I GATC 5 cut(s) 40, 217, 282, 355, 502
Lsp1109I GCAGC 2 cut(s) 569, 793
LweI GCATC 3 cut(s) 268, 604, 708
MaeIII GTNAC 2 cut(s) 107, 653
MalI GATC 5 cut(s) 42, 219, 284, 357, 504
MboI GATC 5 cut(s) 40, 217, 282, 355, 502
MboII GAAGA 3 cut(s) 176, 247, 903
MluCI AATT 3 cut(s) 153, 662, 830
MlyI GAGTC 2 cut(s) 737, 755
MnlI CCTC 5 cut(s) 79, 315, 684, 825, 833
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 66
MseI TTAA 2 cut(s) 272, 402
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 1 cut(s) 33
MspR9I CCNGG 1 cut(s) 34
MvnI CGCG 1 cut(s) 741
MwoI GCNNNNNNNGC 5 cut(s) 10, 426, 566, 601, 790
NciI CCSGG 1 cut(s) 34
NdeI CATATG 2 cut(s) 377, 679
NdeII GATC 5 cut(s) 40, 217, 282, 355, 502
NlaIII CATG 7 cut(s) 8, 94, 230, 444, 474, 518, 868
NlaIV GGNNCC 1 cut(s) 699
NruI TCGCGA 1 cut(s) 741
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 518
PaeR7I CTCGAG 1 cut(s) 576
PciI ACATGT 1 cut(s) 514
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 3 cut(s) 16, 387, 633
PflFI GACNNNGTC 1 cut(s) 306
PkrI GCNGC 3 cut(s) 171, 559, 783
PleI GAGTC 2 cut(s) 736, 754
PpsI GAGTC 2 cut(s) 736, 754
PscI ACATGT 1 cut(s) 514
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 3 cut(s) 238, 444, 698
PstI CTGCAG 1 cut(s) 559
PstNI CAGNNNCTG 1 cut(s) 721
PsyI GACNNNGTC 1 cut(s) 306
RruI TCGCGA 1 cut(s) 741
RsaI GTAC 3 cut(s) 191, 382, 476
RsaNI GTAC 3 cut(s) 190, 381, 475
SalI GTCGAC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 272, 402
SatI GCNGC 3 cut(s) 170, 558, 782
Sau3AI GATC 5 cut(s) 40, 217, 282, 355, 502
Sau96I GGNCC 3 cut(s) 238, 444, 698
SchI GAGTC 2 cut(s) 737, 755
ScrFI CCNGG 1 cut(s) 34
SetI ASST 9 cut(s) 105, 307, 422, 457, 528, 660, 676, 795, 817
SfaNI GCATC 3 cut(s) 268, 604, 708
SfcI CTRYAG 1 cut(s) 555
Sfr274I CTCGAG 1 cut(s) 576
SinI GGWCC 2 cut(s) 444, 698
SlaI CTCGAG 1 cut(s) 576
SmlI CTYRAG 1 cut(s) 576
SmoI CTYRAG 1 cut(s) 576
Sse9I AATT 3 cut(s) 153, 662, 830
SsiI CCGC 8 cut(s) 73, 158, 170, 264, 429, 621, 701, 849
StyD4I CCNGG 1 cut(s) 32
TaaI ACNGT 5 cut(s) 66, 130, 770, 824, 902
TaqI TCGA 3 cut(s) 301, 577, 810
TasI AATT 3 cut(s) 153, 662, 830
TatI WGTACW 2 cut(s) 189, 380
TauI GCSGC 1 cut(s) 172
TfiI GAWTC 3 cut(s) 16, 387, 633
Tru1I TTAA 2 cut(s) 272, 402
Tru9I TTAA 2 cut(s) 272, 402
TscAI CASTG 1 cut(s) 907
TseI GCWGC 2 cut(s) 557, 781
TspDTI ATGAA 5 cut(s) 187, 247, 429, 636, 696
TspRI CASTG 1 cut(s) 907
Tth111I GACNNNGTC 1 cut(s) 306
VpaK11BI GGWCC 2 cut(s) 444, 698
XceI RCATGY 1 cut(s) 518
XcmI CCANNNNNNNNNTGG 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 576
XmiI GTMKAC 2 cut(s) 301, 804
XmnI GAANNNNTTC 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.