pycom13g03430
MYB Family

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0006759
Physical Location & Seq
Reverse (-)
2273642 .. 2274986
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1041 bp
ATGCATGTGGACAGACGCCTTATAGGTTGCCTTCCTGTTGTTTCACTTTCATCCCTCTCTTTCCTCAAAGCAAATATCTCCCTCCACCCCCCCCCCTCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCAAGTAAACCAGCAACTATGGCTGCTCCTAGAAACCCTAATGAAGAACATGAGCTCAGAAAAGGGCCATGGACTCTTGAGGAAGACAATCTGCTTATACATTACATCGCGAACCACGGCGAAGGCCATTGGAACTCTTTAGCAAAATTTGCAGGATTGAAGAGGACCGGAAAAAGCTGCAGATTGAGATGGCTAAATTACTTAAAACCCGACATTAAGCGCGGCAACCTTACTCCGCAAGAACAGCTCTTGATCCTTGAACTCCACTCCAAGTGGGGTAACAGGTGGTCTAAAATTGCGCAGCATTTGCCGGGGCGAACAGACAATGAGATAAAGAACTATTGGAGAACGAGGGTGCAAAAACAGGCGCGCCAACTGAACATCGAGTCGAACAGCGTGCAATTTCTCGACGCAGTTCGGGGTTTCTGGATGCCGATTCTACTGCAAAAGATGAAGCAATCTTCTTGTTCTTCAACCTTGAGCCCTTCTCAGAACTCTGCATCTCCTTCTCTGTCGCCAAATCACACAGTTCCTTCCGTGCCACTCCCAACCTCTCCACCTGGCAATGTGACAAACATGTTTGACAATTATCACATGAGTGGAACTTCCAATCTTGCCACCGTCCCAAGTAATATTCTTTCGTCGGAATCTCTTATTTCACAGGTGCCGCAAATGGCAGAACAGTCGACGAGTTTATACCCTGCATTTGACCACATTGGATACGGCGGCTTAAGTCCAGATGGCAGTTACTATGTGGATAGCAGTAGCTATGACATGGAGGGTCTCAGCCTGGACCCTGTTTCGGCAATGGGCAATTATGACAATTCACAGTTTGATTGCCAGATGGTAGGAAATGATTGGATGTTGGACACCATCACTGACAATTTATGGAACATGGACGGGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006082 GO:0006355 GO:0006357 GO:0006629 GO:0006720 GO:0006721 GO:0006950 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009267 GO:0009605 GO:0009653 GO:0009685 GO:0009686 GO:0009719 GO:0009725 GO:0009739 GO:0009740 GO:0009751 GO:0009753 GO:0009755 GO:0009791 GO:0009867 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009987 GO:0009991 GO:0010015 GO:0010033 GO:0010371 GO:0010373 GO:0010468 GO:0010476 GO:0010556 GO:0010558 GO:0010565 GO:0010605 GO:0010629 GO:0010817 GO:0014070 GO:0016036 GO:0016053 GO:0016101 GO:0016102 GO:0016114 GO:0019216 GO:0019219 GO:0019222 GO:0019747 GO:0019752 GO:0022414 GO:0022622 GO:0023052 GO:0030154 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031667 GO:0031668 GO:0031669 GO:0032350 GO:0032351 GO:0032353 GO:0032501 GO:0032502 GO:0032870 GO:0033554 GO:0033993 GO:0042221 GO:0042445 GO:0042446 GO:0042493 GO:0042592 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043455 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044424 GO:0044464 GO:0045827 GO:0045833 GO:0045892 GO:0045934 GO:0046394 GO:0046677 GO:0046885 GO:0046890 GO:0048364 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048608 GO:0048731 GO:0048827 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051055 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051716 GO:0055062 GO:0055081 GO:0055083 GO:0060255 GO:0061458 GO:0062012 GO:0062014 GO:0065007 GO:0065008 GO:0070887 GO:0071229 GO:0071310 GO:0071370 GO:0071395 GO:0071396 GO:0071495 GO:0071496 GO:0071704 GO:0072505 GO:0072506 GO:0080086 GO:0080090 GO:0090567 GO:0097159 GO:0098771 GO:0099402 GO:0140110 GO:1901363 GO:1901576 GO:1901700 GO:1901701 GO:1902679 GO:1903506 GO:1903507 GO:1905392 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Myb_DNA-binding

Protein Analysis

347

Amino Acids

38.5

Weight (kDa)

6.59

Isoelectric Point (pI)

69.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 65 - 112 2.2e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 68 - 125 2.3e-12 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 118 - 161 1.4e-17 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 122 - 169 1.3e-07 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 432
AccB1I GGYRCC 1 cut(s) 796
AccI GTMKAC 1 cut(s) 818
AccII CGCG 3 cut(s) 242, 354, 502
AciI CCGC 4 cut(s) 354, 368, 800, 858
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 278
AcyI GRCGYC 1 cut(s) 16
AfiI CCNNNNNNNGG 1 cut(s) 934
AflII CTTAAG 1 cut(s) 862
AflIII ACRYGT 1 cut(s) 708
AgsI TTSAA 3 cut(s) 292, 392, 606
AjiI CACGTC 1 cut(s) 1038
AjnI CCWGG 2 cut(s) 691, 921
AleI CACNNNNGTG 1 cut(s) 729
AluBI AGCT 4 cut(s) 187, 309, 379, 900
AluI AGCT 4 cut(s) 187, 309, 379, 900
Alw21I GWGCWC 1 cut(s) 189
Alw26I GTCTC 1 cut(s) 920
AlwI GGATC 1 cut(s) 379
AoxI GGCC 2 cut(s) 197, 256
ApeKI GCWGC 3 cut(s) 155, 309, 433
ApoI RAATTY 1 cut(s) 278
AscI GGCGCGCC 1 cut(s) 500
AspLEI GCGC 4 cut(s) 354, 433, 502, 504
AspS9I GGNCC 3 cut(s) 197, 297, 925
AsuC2I CCSGG 1 cut(s) 444
AvaII GGWCC 2 cut(s) 297, 925
BanI GGYRCC 1 cut(s) 796
BanII GRGCYC 2 cut(s) 189, 617
BbsI GAAGAC 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 189
BbvI GCAGC 3 cut(s) 142, 296, 445
BccI CCATC 4 cut(s) 315, 866, 970, 1013
BceAI ACGGC 2 cut(s) 265, 871
BcgI CGANNNNNNTGC 6 cut(s) 511, 545, 556, 590, 798, 832
BciT130I CCWGG 2 cut(s) 693, 923
BciVI GTATCC 1 cut(s) 845
BcnI CCSGG 1 cut(s) 444
BcoDI GTCTC 1 cut(s) 920
BfaI CTAG 1 cut(s) 162
BfmI CTRYAG 1 cut(s) 310
BfrI CTTAAG 1 cut(s) 862
BfuI GTATCC 1 cut(s) 845
BisI GCNGC 6 cut(s) 156, 310, 355, 434, 800, 859
BlsI GCNGC 6 cut(s) 157, 311, 356, 435, 801, 860
Bme1390I CCNGG 3 cut(s) 444, 693, 923
Bme18I GGWCC 2 cut(s) 297, 925
BmgBI CACGTC 1 cut(s) 1038
BmgT120I GGNCC 3 cut(s) 197, 297, 925
BmiI GGNNCC 2 cut(s) 798, 927
BmrFI CCNGG 3 cut(s) 444, 693, 923
BmsI GCATC 2 cut(s) 552, 641
BpiI GAAGAC 1 cut(s) 222
BplI GAGNNNNNCTC 2 cut(s) 604, 636
BpuEI CTTGAG 3 cut(s) 118, 230, 631
BpuMI CCSGG 1 cut(s) 444
BsaHI GRCGYC 1 cut(s) 16
BsaI GGTCTC 1 cut(s) 920
BsaJI CCNNGG 3 cut(s) 200, 247, 443
BsaWI WCCGGW 1 cut(s) 299
Bsc4I CCNNNNNNNGG 1 cut(s) 934
Bse3DI GCAATG 2 cut(s) 703, 945
BseBI CCWGG 2 cut(s) 693, 923
BseDI CCNNGG 3 cut(s) 200, 247, 443
BseGI GGATG 3 cut(s) 50, 567, 999
BseLI CCNNNNNNNGG 1 cut(s) 934
BseMI GCAATG 2 cut(s) 703, 945
BseMII CTCAG 3 cut(s) 202, 635, 931
BsePI GCGCGC 1 cut(s) 500
BseXI GCAGC 3 cut(s) 142, 296, 445
Bsh1236I CGCG 3 cut(s) 242, 354, 502
BshFI GGCC 2 cut(s) 199, 258
BshNI GGYRCC 1 cut(s) 796
BsiHKAI GWGCWC 1 cut(s) 189
BsiSI CCGG 2 cut(s) 300, 443
BslFI GGGAC 1 cut(s) 740
BslI CCNNNNNNNGG 1 cut(s) 934
BsmAI GTCTC 1 cut(s) 920
BsmFI GGGAC 1 cut(s) 740
BsnI GGCC 2 cut(s) 199, 258
Bso31I GGTCTC 1 cut(s) 920
Bsp1286I GDGCHC 2 cut(s) 189, 617
Bsp143I GATC 1 cut(s) 384
Bsp19I CCATGG 1 cut(s) 200
Bsp68I TCGCGA 1 cut(s) 242
BspACI CCGC 4 cut(s) 354, 368, 800, 858
BspANI GGCC 2 cut(s) 199, 258
BspCNI CTCAG 3 cut(s) 201, 634, 930
BspFNI CGCG 3 cut(s) 242, 354, 502
BspLI GGNNCC 2 cut(s) 798, 927
BspMAI CTGCAG 1 cut(s) 314
BspPI GGATC 1 cut(s) 379
BspT107I GGYRCC 1 cut(s) 796
BspTI CTTAAG 1 cut(s) 862
BspTNI GGTCTC 1 cut(s) 920
BsrDI GCAATG 2 cut(s) 703, 945
BssECI CCNNGG 3 cut(s) 200, 247, 443
BssHII GCGCGC 1 cut(s) 500
BssMI GATC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 16
BssT1I CCWWGG 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 693, 923
Bst4CI ACNGT 4 cut(s) 661, 754, 816, 963
Bst6I CTCTTC 1 cut(s) 287
BstACI GRCGYC 1 cut(s) 16
BstAFI CTTAAG 1 cut(s) 862
BstAPI GCANNNNNTGC 2 cut(s) 281, 439
BstC8I GCNNGC 2 cut(s) 502, 530
BstDEI CTNAG 3 cut(s) 188, 621, 917
BstDSI CCRYGG 2 cut(s) 200, 247
BstF5I GGATG 3 cut(s) 50, 567, 999
BstFNI CGCG 3 cut(s) 242, 354, 502
BstHHI GCGC 4 cut(s) 354, 433, 502, 504
BstKTI GATC 1 cut(s) 387
BstMAI GTCTC 1 cut(s) 920
BstMBI GATC 1 cut(s) 384
BstMWI GCNNNNNNNGC 4 cut(s) 152, 281, 376, 439
BstNI CCWGG 2 cut(s) 693, 923
BstNSI RCATGY 2 cut(s) 8, 712
BstSCI CCNGG 3 cut(s) 442, 691, 921
BstSFI CTRYAG 1 cut(s) 310
BstUI CGCG 3 cut(s) 242, 354, 502
BstV1I GCAGC 3 cut(s) 142, 296, 445
BstV2I GAAGAC 1 cut(s) 222
BsuI GTATCC 1 cut(s) 845
BsuRI GGCC 2 cut(s) 199, 258
BtgI CCRYGG 2 cut(s) 200, 247
BtgZI GCGATG 1 cut(s) 223
BtrI CACGTC 1 cut(s) 1038
BtsCI GGATG 3 cut(s) 50, 567, 999
BtsIMutI CAGTG 1 cut(s) 1008
BtuMI TCGCGA 1 cut(s) 242
Cac8I GCNNGC 2 cut(s) 502, 530
CfoI GCGC 4 cut(s) 354, 433, 502, 504
Cfr13I GGNCC 3 cut(s) 197, 297, 925
CseI GACGC 2 cut(s) 24, 551
CviAII CATG 7 cut(s) 5, 182, 201, 709, 727, 907, 1027
DdeI CTNAG 3 cut(s) 188, 621, 917
DpnI GATC 1 cut(s) 386
DpnII GATC 1 cut(s) 384
Eam1104I CTCTTC 1 cut(s) 287
EarI CTCTTC 1 cut(s) 287
Ecl136II GAGCTC 1 cut(s) 187
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 2 cut(s) 189, 617
Eco31I GGTCTC 1 cut(s) 920
Eco47I GGWCC 2 cut(s) 297, 925
Eco53kI GAGCTC 1 cut(s) 187
EcoICRI GAGCTC 1 cut(s) 187
EcoRII CCWGG 2 cut(s) 691, 921
EcoT14I CCWWGG 1 cut(s) 200
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 2 cut(s) 189, 617
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 7 cut(s) 8, 185, 204, 712, 730, 910, 1030
FaqI GGGAC 1 cut(s) 740
FatI CATG 7 cut(s) 4, 181, 200, 708, 726, 906, 1026
FblI GTMKAC 1 cut(s) 818
Fnu4HI GCNGC 6 cut(s) 156, 310, 355, 434, 800, 859
FokI GGATG 3 cut(s) 37, 574, 1006
FriOI GRGCYC 2 cut(s) 189, 617
Fsp4HI GCNGC 6 cut(s) 156, 310, 355, 434, 800, 859
FspBI CTAG 1 cut(s) 162
FspI TGCGCA 1 cut(s) 432
GlaI GCGC 4 cut(s) 353, 432, 501, 503
GluI GCNGC 6 cut(s) 156, 310, 355, 434, 800, 859
HaeIII GGCC 2 cut(s) 199, 258
HapII CCGG 2 cut(s) 300, 443
HgaI GACGC 2 cut(s) 24, 551
HhaI GCGC 4 cut(s) 354, 433, 502, 504
Hin1I GRCGYC 1 cut(s) 16
Hin1II CATG 7 cut(s) 8, 185, 204, 712, 730, 910, 1030
Hin6I GCGC 4 cut(s) 352, 431, 500, 502
HinP1I GCGC 4 cut(s) 352, 431, 500, 502
HincII GTYRAC 1 cut(s) 819
HindII GTYRAC 1 cut(s) 819
HinfI GANTC 4 cut(s) 205, 518, 568, 779
HpaII CCGG 2 cut(s) 300, 443
Hpy166II GTNNAC 3 cut(s) 10, 140, 819
Hpy188I TCNGA 3 cut(s) 191, 624, 778
Hpy188III TCNNGA 6 cut(s) 209, 241, 382, 539, 559, 869
Hpy8I GTNNAC 3 cut(s) 10, 140, 819
Hpy99I CGWCG 3 cut(s) 545, 778, 823
HpyAV CCTTC 5 cut(s) 41, 248, 627, 648, 675
HpyCH4III ACNGT 4 cut(s) 661, 754, 816, 963
HpyCH4IV ACGT 1 cut(s) 1037
HpyCH4V TGCA 8 cut(s) 4, 284, 312, 490, 532, 577, 632, 836
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 281, 376, 439
HpyF3I CTNAG 3 cut(s) 188, 621, 917
HpySE526I ACGT 1 cut(s) 1037
Hsp92I GRCGYC 1 cut(s) 16
Hsp92II CATG 7 cut(s) 8, 185, 204, 712, 730, 910, 1030
HspAI GCGC 4 cut(s) 352, 431, 500, 502
Kzo9I GATC 1 cut(s) 384
LmnI GCTCC 1 cut(s) 163
Lsp1109I GCAGC 3 cut(s) 142, 296, 445
LweI GCATC 2 cut(s) 552, 641
MaeI CTAG 1 cut(s) 162
MaeII ACGT 1 cut(s) 1037
MaeIII GTNAC 3 cut(s) 410, 700, 878
MalI GATC 1 cut(s) 386
MboI GATC 1 cut(s) 384
MboII GAAGA 5 cut(s) 188, 227, 304, 585, 594
MhlI GDGCHC 2 cut(s) 189, 617
MluCI AATT 8 cut(s) 278, 328, 426, 533, 718, 946, 955, 1015
MlyI GAGTC 2 cut(s) 199, 527
MmeI TCCRAC 2 cut(s) 756, 978
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 3 cut(s) 335, 348, 863
MslI CAYNNNNRTG 1 cut(s) 729
MspCI CTTAAG 1 cut(s) 862
MspI CCGG 2 cut(s) 300, 443
MspR9I CCNGG 3 cut(s) 444, 693, 923
MvaI CCWGG 2 cut(s) 693, 923
MvnI CGCG 3 cut(s) 242, 354, 502
MwoI GCNNNNNNNGC 4 cut(s) 152, 281, 376, 439
NciI CCSGG 1 cut(s) 444
NcoI CCATGG 1 cut(s) 200
NdeII GATC 1 cut(s) 384
NlaIII CATG 7 cut(s) 8, 185, 204, 712, 730, 910, 1030
NlaIV GGNNCC 2 cut(s) 798, 927
NmuCI GTSAC 1 cut(s) 700
NruI TCGCGA 1 cut(s) 242
NsbI TGCGCA 1 cut(s) 432
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 2 cut(s) 8, 712
OliI CACNNNNGTG 1 cut(s) 729
PalAI GGCGCGCC 1 cut(s) 500
PauI GCGCGC 1 cut(s) 500
PciI ACATGT 1 cut(s) 708
PfeI GAWTC 2 cut(s) 568, 779
PkrI GCNGC 6 cut(s) 157, 311, 356, 435, 801, 860
PleI GAGTC 2 cut(s) 199, 526
PpsI GAGTC 2 cut(s) 199, 526
PscI ACATGT 1 cut(s) 708
Psp124BI GAGCTC 1 cut(s) 189
Psp6I CCWGG 2 cut(s) 691, 921
PspGI CCWGG 2 cut(s) 691, 921
PspN4I GGNNCC 2 cut(s) 798, 927
PspPI GGNCC 3 cut(s) 197, 297, 925
PstI CTGCAG 1 cut(s) 314
PteI GCGCGC 1 cut(s) 500
RruI TCGCGA 1 cut(s) 242
RseI CAYNNNNRTG 1 cut(s) 729
SacI GAGCTC 1 cut(s) 189
SalI GTCGAC 1 cut(s) 817
SaqAI TTAA 3 cut(s) 335, 348, 863
SatI GCNGC 6 cut(s) 156, 310, 355, 434, 800, 859
Sau3AI GATC 1 cut(s) 384
Sau96I GGNCC 3 cut(s) 197, 297, 925
SchI GAGTC 2 cut(s) 199, 527
ScrFI CCNGG 3 cut(s) 444, 693, 923
SduI GDGCHC 2 cut(s) 189, 617
SfaNI GCATC 2 cut(s) 552, 641
SfcI CTRYAG 1 cut(s) 310
SgsI GGCGCGCC 1 cut(s) 500
SinI GGWCC 2 cut(s) 297, 925
SmiMI CAYNNNNRTG 1 cut(s) 729
SmlI CTYRAG 4 cut(s) 133, 209, 610, 862
SmoI CTYRAG 4 cut(s) 133, 209, 610, 862
Sse9I AATT 8 cut(s) 278, 328, 426, 533, 718, 946, 955, 1015
SsiI CCGC 4 cut(s) 354, 368, 800, 858
SspI AATATT 1 cut(s) 766
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 189
StyD4I CCNGG 3 cut(s) 442, 691, 921
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 4 cut(s) 661, 754, 816, 963
TaiI ACGT 1 cut(s) 1040
TaqI TCGA 4 cut(s) 516, 521, 540, 818
TasI AATT 8 cut(s) 278, 328, 426, 533, 718, 946, 955, 1015
TauI GCSGC 3 cut(s) 357, 802, 861
TfiI GAWTC 2 cut(s) 568, 779
Tru1I TTAA 3 cut(s) 335, 348, 863
Tru9I TTAA 3 cut(s) 335, 348, 863
TscAI CASTG 1 cut(s) 1015
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 3 cut(s) 155, 309, 433
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 3 cut(s) 39, 189, 599
TspGWI ACGGA 1 cut(s) 658
TspRI CASTG 1 cut(s) 1015
Vha464I CTTAAG 1 cut(s) 862
VpaK11BI GGWCC 2 cut(s) 297, 925
XapI RAATTY 1 cut(s) 278
XceI RCATGY 2 cut(s) 8, 712
XmiI GTMKAC 1 cut(s) 818
XspI CTAG 1 cut(s) 162
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.