Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0013932

Physical Location & Seq

Genomic Coordinates Forward (+)

2280720 .. 2282393

Gene Structure 1674 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGGAACTCATAGACAATCTCTGTGATTTGGAGACTAGTCTTGGCACCAATATTCATCATGAAATCATGGCTCTCTCGGGCAATGACACCTCCCTTACTACCGATGATTATCATCAGCCACAACCTGATGATCATCAGCTCCCTATCAACTTCACTCAACACATTCAAAGCTTTTCTCAAATTTCTGATGATCCAAATCATGACGACGTCTTAGTTGCTCGTTCCACAGCTCATCTCATGAATGGAGATTTTCGCCAAGAAACCGGAAAAGGAAAGTCGTTAGGAGGAAGAAAGAGAAAGAATAGTGAAAAGGATGGAGAGAAACTAAAAGAAGTAATTCATGTGAGAGCTAAGAGAGGCCAAGCCACTGATAGCCACAGTTTGGCAGAAAGGCTAAGAAGAGAGAAAATAAACGAGAGGCTGAGATGCCTGCAAAATCTGGTTCCAGGCTGCTACAAGACAATGGGAATGGCAGTAATGCTGGATGTGGTTTGCAGTTACGTTCAGTCACTGCAGAACCAAATTGAGTTTCTGTCAATGAAACTTTCTGCAGCAAGTGCGTATTATGATTTCAATACACCAGGTGTGGATGCTGTGGACGCAATGCAACAGCAGCAGGGGACAAGTACTGCATATCCGGAGGTACAAGAGATGGTAGTAAGATCAGAAGGGTATGGAGGACTTCCTCACTACAACAACGCAACATGGCCTATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010422 GO:0010468 GO:0010556 GO:0010817 GO:0010893 GO:0019216 GO:0019218 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032350 GO:0032352 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045834 GO:0045940 GO:0046885 GO:0046886 GO:0046889 GO:0046890 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050810 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0065008 GO:0080090 GO:0090030 GO:0140110 GO:1903506 GO:2000112 GO:2000488 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HLH

Protein Analysis

239

Amino Acids

26.7

Weight (kDa)

5.53

Isoelectric Point (pI)

43.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0013932)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25330
fragaria_vesca	FvH4_4g27100 FvH4_4g27100
malus_domestica	MD13G1040000.v1.1 MD16G1040900.v1.1
prunus_persica	Prupe.1G313200_v2.0.a1 Prupe.1G313200_v2.0.a1
pyrus_communis	pycom13g03440
rosa_chinensis	RchiOBHm_Chr4g0434901
rosa_laevigata	RLG00000006637
rosa_multiflora	Rmu_sc0002328.1_g000002
rosa_roxburghii	Rroxscaffold_5G00376110
rosa_rugosa	Rorug04G0280100 Rorug04G0280200
rosa_samantha	Rh4AG335900 Rh4DG338400
rosa_wichuraiana	Rw4G029310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	210
AccB1I	GGYRCC	1 cut(s)	44
AccB7I	CCANNNNNTGG	1 cut(s)	382
AccIII	TCCGGA	1 cut(s)	637
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	207
AdeI	CACNNNGTG	1 cut(s)	584
AfaI	GTAC	2 cut(s)	628, 645
AfiI	CCNNNNNNNGG	1 cut(s)	382
AgsI	TTSAA	2 cut(s)	167, 574
AhlI	ACTAGT	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	445, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	513, 545
AluBI	AGCT	4 cut(s)	139, 171, 230, 350
AluI	AGCT	4 cut(s)	139, 171, 230, 350
Alw26I	GTCTC	1 cut(s)	26
AlwI	GGATC	1 cut(s)	185
AlwNI	CAGNNNCTG	1 cut(s)	511
Ama87I	CYCGRG	1 cut(s)	76
Aor13HI	TCCGGA	1 cut(s)	637
AoxI	GGCC	2 cut(s)	358, 707
ApeKI	GCWGC	3 cut(s)	450, 551, 613
ApoI	RAATTY	1 cut(s)	180
Asp700I	GAANNNNTTC	1 cut(s)	336
AvaI	CYCGRG	1 cut(s)	76
BanI	GGYRCC	1 cut(s)	44
BbvI	GCAGC	3 cut(s)	437, 563, 625
BccI	CCATC	2 cut(s)	308, 646
BciT130I	CCWGG	2 cut(s)	447, 582
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	26
BcuI	ACTAGT	1 cut(s)	35
BfaI	CTAG	1 cut(s)	36
BfmI	CTRYAG	2 cut(s)	512, 549
BisI	GCNGC	3 cut(s)	451, 552, 614
BlsI	GCNGC	3 cut(s)	452, 553, 615
BmcAI	AGTACT	1 cut(s)	628
Bme1390I	CCNGG	2 cut(s)	447, 582
BmeT110I	CYCGRG	1 cut(s)	76
BmiI	GGNNCC	2 cut(s)	46, 444
BmrFI	CCNGG	2 cut(s)	447, 582
BmsI	GCATC	2 cut(s)	416, 580
BsaBI	GATNNNNATC	4 cut(s)	108, 111, 132, 195
BsaHI	GRCGYC	1 cut(s)	207
BsaWI	WCCGGW	2 cut(s)	263, 637
Bsc4I	CCNNNNNNNGG	1 cut(s)	382
Bse3DI	GCAATG	2 cut(s)	88, 609
Bse8I	GATNNNNATC	4 cut(s)	108, 111, 132, 195
BseAI	TCCGGA	1 cut(s)	637
BseBI	CCWGG	2 cut(s)	447, 582
BseGI	GGATG	3 cut(s)	319, 490, 595
BseJI	GATNNNNATC	4 cut(s)	108, 111, 132, 195
BseLI	CCNNNNNNNGG	1 cut(s)	382
BseMI	GCAATG	2 cut(s)	88, 609
BseMII	CTCAG	1 cut(s)	413
BseXI	GCAGC	3 cut(s)	437, 563, 625
BshFI	GGCC	2 cut(s)	360, 709
BshNI	GGYRCC	1 cut(s)	44
BsiHKCI	CYCGRG	1 cut(s)	76
BsiSI	CCGG	2 cut(s)	264, 638
BslFI	GGGAC	1 cut(s)	634
BslI	CCNNNNNNNGG	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	26
BsmFI	GGGAC	1 cut(s)	634
BsnI	GGCC	2 cut(s)	360, 709
BsoBI	CYCGRG	1 cut(s)	76
Bsp13I	TCCGGA	1 cut(s)	637
Bsp143I	GATC	3 cut(s)	130, 190, 662
BspANI	GGCC	2 cut(s)	360, 709
BspCNI	CTCAG	1 cut(s)	414
BspEI	TCCGGA	1 cut(s)	637
BspHI	TCATGA	3 cut(s)	58, 199, 237
BspLI	GGNNCC	2 cut(s)	46, 444
BspMAI	CTGCAG	2 cut(s)	516, 553
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	1 cut(s)	44
BsrDI	GCAATG	2 cut(s)	88, 609
BssMI	GATC	3 cut(s)	130, 190, 662
BssNI	GRCGYC	1 cut(s)	207
Bst2UI	CCWGG	2 cut(s)	447, 582
Bst4CI	ACNGT	1 cut(s)	380
Bst6I	CTCTTC	1 cut(s)	394
BstACI	GRCGYC	1 cut(s)	207
BstAPI	GCANNNNNTGC	1 cut(s)	557
BstC8I	GCNNGC	1 cut(s)	431
BstDEI	CTNAG	4 cut(s)	211, 351, 395, 422
BstF5I	GGATG	3 cut(s)	319, 490, 595
BstKTI	GATC	3 cut(s)	133, 193, 665
BstMAI	GTCTC	1 cut(s)	26
BstMBI	GATC	3 cut(s)	130, 190, 662
BstMWI	GCNNNNNNNGC	3 cut(s)	557, 599, 613
BstNI	CCWGG	2 cut(s)	447, 582
BstSCI	CCNGG	2 cut(s)	445, 580
BstSFI	CTRYAG	2 cut(s)	512, 549
BstV1I	GCAGC	3 cut(s)	437, 563, 625
BsuRI	GGCC	2 cut(s)	360, 709
BtsCI	GGATG	3 cut(s)	319, 490, 595
BtsI	GCAGTG	1 cut(s)	509
BtsIMutI	CAGTG	2 cut(s)	366, 509
Cac8I	GCNNGC	1 cut(s)	431
CaiI	CAGNNNCTG	1 cut(s)	511
CciI	TCATGA	3 cut(s)	58, 199, 237
CseI	GACGC	1 cut(s)	608
CsiI	ACCWGGT	1 cut(s)	580
Csp6I	GTAC	2 cut(s)	627, 644
CviAII	CATG	6 cut(s)	59, 67, 200, 238, 341, 705
CviQI	GTAC	2 cut(s)	627, 644
DdeI	CTNAG	4 cut(s)	211, 351, 395, 422
DpnI	GATC	3 cut(s)	132, 192, 664
DpnII	GATC	3 cut(s)	130, 190, 662
DraIII	CACNNNGTG	1 cut(s)	584
Eam1104I	CTCTTC	1 cut(s)	394
EarI	CTCTTC	1 cut(s)	394
Eco88I	CYCGRG	1 cut(s)	76
EcoRII	CCWGG	2 cut(s)	445, 580
FaeI	CATG	6 cut(s)	62, 70, 203, 241, 344, 708
FaqI	GGGAC	1 cut(s)	634
FatI	CATG	6 cut(s)	58, 66, 199, 237, 340, 704
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	3 cut(s)	451, 552, 614
FokI	GGATG	3 cut(s)	326, 497, 602
Fsp4HI	GCNGC	3 cut(s)	451, 552, 614
FspBI	CTAG	1 cut(s)	36
GluI	GCNGC	3 cut(s)	451, 552, 614
HaeIII	GGCC	2 cut(s)	360, 709
HapII	CCGG	2 cut(s)	264, 638
HgaI	GACGC	1 cut(s)	608
Hin1I	GRCGYC	1 cut(s)	207
Hin1II	CATG	6 cut(s)	62, 70, 203, 241, 344, 708
HindIII	AAGCTT	1 cut(s)	169
HpaII	CCGG	2 cut(s)	264, 638
Hpy166II	GTNNAC	1 cut(s)	598
Hpy188I	TCNGA	2 cut(s)	187, 667
Hpy188III	TCNNGA	4 cut(s)	59, 200, 238, 638
Hpy8I	GTNNAC	1 cut(s)	598
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	1 cut(s)	662
HpyCH4III	ACNGT	1 cut(s)	380
HpyCH4IV	ACGT	2 cut(s)	207, 501
HpyCH4V	TGCA	6 cut(s)	433, 495, 514, 551, 607, 632
HpyF10VI	GCNNNNNNNGC	3 cut(s)	557, 599, 613
HpyF3I	CTNAG	4 cut(s)	211, 351, 395, 422
HpySE526I	ACGT	2 cut(s)	207, 501
Hsp92I	GRCGYC	1 cut(s)	207
Hsp92II	CATG	6 cut(s)	62, 70, 203, 241, 344, 708
Kpn2I	TCCGGA	1 cut(s)	637
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 190, 662
LmnI	GCTCC	1 cut(s)	144
Lsp1109I	GCAGC	3 cut(s)	437, 563, 625
LweI	GCATC	2 cut(s)	416, 580
MabI	ACCWGGT	1 cut(s)	580
MaeI	CTAG	1 cut(s)	36
MaeII	ACGT	2 cut(s)	207, 501
MaeIII	GTNAC	2 cut(s)	497, 507
MalI	GATC	3 cut(s)	132, 192, 664
MboI	GATC	3 cut(s)	130, 190, 662
MboII	GAAGA	2 cut(s)	300, 411
MluCI	AATT	3 cut(s)	180, 336, 522
MnlI	CCTC	7 cut(s)	100, 278, 350, 411, 634, 671, 696
MroI	TCCGGA	1 cut(s)	637
MroXI	GAANNNNTTC	1 cut(s)	336
MspI	CCGG	2 cut(s)	264, 638
MspR9I	CCNGG	2 cut(s)	447, 582
MvaI	CCWGG	2 cut(s)	447, 582
MwoI	GCNNNNNNNGC	3 cut(s)	557, 599, 613
NdeII	GATC	3 cut(s)	130, 190, 662
NlaIII	CATG	6 cut(s)	62, 70, 203, 241, 344, 708
NlaIV	GGNNCC	2 cut(s)	46, 444
NmuCI	GTSAC	1 cut(s)	507
PagI	TCATGA	3 cut(s)	58, 199, 237
PdmI	GAANNNNTTC	1 cut(s)	336
PflFI	GACNNNGTC	1 cut(s)	206
PflMI	CCANNNNNTGG	1 cut(s)	382
PkrI	GCNGC	3 cut(s)	452, 553, 615
Psp6I	CCWGG	2 cut(s)	445, 580
PspGI	CCWGG	2 cut(s)	445, 580
PspN4I	GGNNCC	2 cut(s)	46, 444
PstI	CTGCAG	2 cut(s)	516, 553
PstNI	CAGNNNCTG	1 cut(s)	511
PsyI	GACNNNGTC	1 cut(s)	206
RsaI	GTAC	2 cut(s)	628, 645
RsaNI	GTAC	2 cut(s)	627, 644
SatI	GCNGC	3 cut(s)	451, 552, 614
Sau3AI	GATC	3 cut(s)	130, 190, 662
ScaI	AGTACT	1 cut(s)	628
ScrFI	CCNGG	2 cut(s)	447, 582
SexAI	ACCWGGT	1 cut(s)	580
SfaNI	GCATC	2 cut(s)	416, 580
SfcI	CTRYAG	2 cut(s)	512, 549
SpeI	ACTAGT	1 cut(s)	35
Sse9I	AATT	3 cut(s)	180, 336, 522
SspI	AATATT	1 cut(s)	52
SspMI	CTAG	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	445, 580
TaaI	ACNGT	1 cut(s)	380
TaiI	ACGT	2 cut(s)	210, 504
TasI	AATT	3 cut(s)	180, 336, 522
TatI	WGTACW	1 cut(s)	626
TscAI	CASTG	2 cut(s)	373, 516
TseFI	GTSAC	1 cut(s)	507
TseI	GCWGC	3 cut(s)	450, 551, 613
Tsp45I	GTSAC	1 cut(s)	507
TspDTI	ATGAA	5 cut(s)	44, 75, 254, 329, 554
TspRI	CASTG	2 cut(s)	373, 516
Tth111I	GACNNNGTC	1 cut(s)	206
Van91I	CCANNNNNTGG	1 cut(s)	382
XapI	RAATTY	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	336
XspI	CTAG	1 cut(s)	36
ZraI	GACGTC	1 cut(s)	208
ZrmI	AGTACT	1 cut(s)	628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.