Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0010463

Physical Location & Seq

Genomic Coordinates Forward (+)

2401372 .. 2403732

Gene Structure 2361 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03630.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 576 bp

ATGGGAGAAGGAAGGGGTTCGACTTTGGTGCACCTGCTGGTGGTGGTTCTGAGCTTAGTGGCCTTCGGGTTTGCCATTGCTGCCGAGAGACAAAGAAGTGTGGGCGAAATACGTACAGATGTTCAAACGAATGAAACATACTGTGTGTATAATTCAGATGTTGCAACTGGTTATGGAGTAGGCGGTTTCTTGTTTCTTCTCTCAGGCGAATCACTCCTCATGGGTGTCACGAAATGCATGTGTTTTGGCAGACCCTTGGCCCCTGGTGGAAATCGAGCTTGGTCCATTATATATTTTATTTCATCATGGACAACTTTCCTGGTTGCGGAAGCTTGTCTCATTGCCGGTGCTACAAAAAATGCGTATCACACCAAGTACCGGGAAATGATATATGCTCAGAACTTCTCCTGTGAAGCATTGCGAAAAGGCGTTTTCATTTCTGGAGCAGTATTTGTGGTTGCGACTATGATTCTCAACGTGTATTACTACATGTACTTCACCAAGGCAACTGCTGCTCAGGCAGCTCACAAAGCAAATCGTTCGAGCTCAACTGTCGGGATGACTGGGTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

192

Amino Acids

20.71

Weight (kDa)

8.98

Isoelectric Point (pI)

29.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13380
fragaria_vesca	FvH4_4g27350 FvH4_4g27350
malus_domestica	MD13G1042100.v1.1 MD16G1042800.v1.1
prunus_persica	Prupe.1G311300_v2.0.a1 Prupe.1G311300_v2.0.a1
pyrus_communis	pycom13g03630 pycom16g03680
rosa_chinensis	RchiOBHm_Chr2g0089361 RchiOBHm_Chr4g0435161
rosa_laevigata	RLG00000006614
rosa_multiflora	Rmu_sc0003382.1_g000007 Rmu_ssc0000339.1_g000035
rosa_roxburghii	Rroxscaffold_5G00376380
rosa_rugosa	Rorug04G0282700
rosa_samantha	Rh4AG338300 Rh4BG346500 Rh4CG361000 Rh4DG340900
rosa_wichuraiana	Rw4G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	42
Acc36I	ACCTGC	1 cut(s)	42
AciI	CCGC	2 cut(s)	183, 326
AfaI	GTAC	3 cut(s)	115, 377, 494
AfiI	CCNNNNNNNGG	3 cut(s)	40, 325, 378
AflIII	ACRYGT	2 cut(s)	477, 489
AgsI	TTSAA	1 cut(s)	125
AjnI	CCWGG	2 cut(s)	262, 318
AjuI	GAANNNNNNNTTGG	2 cut(s)	262, 294
AluBI	AGCT	5 cut(s)	54, 278, 332, 524, 546
AluI	AGCT	5 cut(s)	54, 278, 332, 524, 546
Alw21I	GWGCWC	2 cut(s)	33, 548
Alw26I	GTCTC	2 cut(s)	82, 341
Alw44I	GTGCAC	1 cut(s)	29
AoxI	GGCC	2 cut(s)	60, 258
ApaLI	GTGCAC	1 cut(s)	29
ApeKI	GCWGC	3 cut(s)	80, 512, 521
Asp700I	GAANNNNTTC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	259, 282
AsuC2I	CCSGG	1 cut(s)	380
AsuHPI	GGTGA	1 cut(s)	490
AvaII	GGWCC	1 cut(s)	282
BaeGI	GKGCMC	1 cut(s)	33
BanII	GRGCYC	1 cut(s)	548
Bbv12I	GWGCWC	2 cut(s)	33, 548
BbvI	GCAGC	3 cut(s)	67, 499, 533
BcgI	CGANNNNNNTGC	4 cut(s)	10, 44, 522, 556
BciT130I	CCWGG	2 cut(s)	264, 320
BcnI	CCSGG	1 cut(s)	380
BcoDI	GTCTC	2 cut(s)	82, 341
BfuAI	ACCTGC	1 cut(s)	42
BisI	GCNGC	3 cut(s)	81, 513, 522
BlsI	GCNGC	3 cut(s)	82, 514, 523
Bme1390I	CCNGG	3 cut(s)	264, 320, 380
Bme18I	GGWCC	1 cut(s)	282
BmgT120I	GGNCC	2 cut(s)	259, 282
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	3 cut(s)	264, 320, 380
BmrI	ACTGGG	1 cut(s)	573
BmuI	ACTGGG	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	462
Bpu10I	CCTNAGC	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	380
BsaAI	YACGTR	1 cut(s)	113
BsaJI	CCNNGG	3 cut(s)	255, 262, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	40, 325, 378
Bse118I	RCCGGY	1 cut(s)	344
Bse1I	ACTGG	2 cut(s)	172, 568
Bse3DI	GCAATG	3 cut(s)	75, 339, 416
BseBI	CCWGG	2 cut(s)	264, 320
BseDI	CCNNGG	3 cut(s)	255, 262, 501
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	3 cut(s)	40, 325, 378
BseMI	GCAATG	3 cut(s)	75, 339, 416
BseMII	CTCAG	4 cut(s)	41, 216, 410, 530
BseNI	ACTGG	2 cut(s)	172, 568
BseRI	GAGGAG	1 cut(s)	206
BseSI	GKGCMC	1 cut(s)	33
BseXI	GCAGC	3 cut(s)	67, 499, 533
BshFI	GGCC	2 cut(s)	62, 260
BsiHKAI	GWGCWC	2 cut(s)	33, 548
BsiSI	CCGG	2 cut(s)	345, 379
BslI	CCNNNNNNNGG	3 cut(s)	40, 325, 378
BsmAI	GTCTC	2 cut(s)	82, 341
BsnI	GGCC	2 cut(s)	62, 260
Bsp1286I	GDGCHC	2 cut(s)	33, 548
BspACI	CCGC	2 cut(s)	183, 326
BspANI	GGCC	2 cut(s)	62, 260
BspCNI	CTCAG	4 cut(s)	42, 215, 409, 529
BspLI	GGNNCC	1 cut(s)	261
BspMI	ACCTGC	1 cut(s)	42
BsrDI	GCAATG	3 cut(s)	75, 339, 416
BsrFI	RCCGGY	1 cut(s)	344
BsrI	ACTGG	2 cut(s)	172, 568
BssAI	RCCGGY	1 cut(s)	344
BssECI	CCNNGG	3 cut(s)	255, 262, 501
BssT1I	CCWWGG	2 cut(s)	255, 501
Bst2UI	CCWGG	2 cut(s)	264, 320
Bst4CI	ACNGT	2 cut(s)	143, 553
BstAPI	GCANNNNNTGC	1 cut(s)	512
BstBAI	YACGTR	1 cut(s)	113
BstDEI	CTNAG	5 cut(s)	50, 55, 202, 396, 516
BstF5I	GGATG	1 cut(s)	564
BstMAI	GTCTC	2 cut(s)	82, 341
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 512, 518, 521, 530
BstNI	CCWGG	2 cut(s)	264, 320
BstNSI	RCATGY	2 cut(s)	241, 493
BstSCI	CCNGG	3 cut(s)	262, 318, 378
BstSLI	GKGCMC	1 cut(s)	33
BstSNI	TACGTA	1 cut(s)	113
BstV1I	GCAGC	3 cut(s)	67, 499, 533
BsuRI	GGCC	2 cut(s)	62, 260
BtsCI	GGATG	1 cut(s)	564
BveI	ACCTGC	1 cut(s)	42
Cfr10I	RCCGGY	1 cut(s)	344
Cfr13I	GGNCC	2 cut(s)	259, 282
Csp6I	GTAC	3 cut(s)	114, 376, 493
CviAII	CATG	4 cut(s)	220, 238, 306, 490
CviJI	RGCY	7 cut(s)	54, 62, 260, 278, 332, 524, 546
CviKI_1	RGCY	7 cut(s)	54, 62, 260, 278, 332, 524, 546
CviQI	GTAC	3 cut(s)	114, 376, 493
DdeI	CTNAG	5 cut(s)	50, 55, 202, 396, 516
Ecl136II	GAGCTC	1 cut(s)	546
Eco105I	TACGTA	1 cut(s)	113
Eco130I	CCWWGG	2 cut(s)	255, 501
Eco24I	GRGCYC	1 cut(s)	548
Eco47I	GGWCC	1 cut(s)	282
Eco53kI	GAGCTC	1 cut(s)	546
EcoICRI	GAGCTC	1 cut(s)	546
EcoRII	CCWGG	2 cut(s)	262, 318
EcoT14I	CCWWGG	2 cut(s)	255, 501
EcoT22I	ATGCAT	2 cut(s)	239, 574
EcoT38I	GRGCYC	1 cut(s)	548
ErhI	CCWWGG	2 cut(s)	255, 501
FaeI	CATG	4 cut(s)	223, 241, 309, 493
FatI	CATG	4 cut(s)	219, 237, 305, 489
Fnu4HI	GCNGC	3 cut(s)	81, 513, 522
FokI	GGATG	1 cut(s)	571
FriOI	GRGCYC	1 cut(s)	548
Fsp4HI	GCNGC	3 cut(s)	81, 513, 522
GluI	GCNGC	3 cut(s)	81, 513, 522
GsuI	CTGGAG	1 cut(s)	462
HaeIII	GGCC	2 cut(s)	62, 260
HapII	CCGG	2 cut(s)	345, 379
Hin1II	CATG	4 cut(s)	223, 241, 309, 493
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	209, 469
HpaII	CCGG	2 cut(s)	345, 379
HphI	GGTGA	1 cut(s)	490
Hpy166II	GTNNAC	1 cut(s)	31
Hpy188I	TCNGA	3 cut(s)	51, 157, 399
Hpy188III	TCNNGA	3 cut(s)	229, 441, 556
Hpy8I	GTNNAC	1 cut(s)	31
HpyAV	CCTTC	2 cut(s)	6, 73
HpyCH4III	ACNGT	2 cut(s)	143, 553
HpyCH4IV	ACGT	2 cut(s)	112, 477
HpyCH4V	TGCA	4 cut(s)	31, 164, 237, 572
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 512, 518, 521, 530
HpyF3I	CTNAG	5 cut(s)	50, 55, 202, 396, 516
HpySE526I	ACGT	2 cut(s)	112, 477
Hsp92II	CATG	4 cut(s)	223, 241, 309, 493
LmnI	GCTCC	1 cut(s)	443
Lsp1109I	GCAGC	3 cut(s)	67, 499, 533
MaeII	ACGT	2 cut(s)	112, 477
MaeIII	GTNAC	1 cut(s)	226
MboII	GAAGA	1 cut(s)	188
MhlI	GDGCHC	2 cut(s)	33, 548
MluCI	AATT	1 cut(s)	151
MnlI	CCTC	1 cut(s)	227
Mph1103I	ATGCAT	2 cut(s)	239, 574
MroXI	GAANNNNTTC	1 cut(s)	16
MspI	CCGG	2 cut(s)	345, 379
MspR9I	CCNGG	3 cut(s)	264, 320, 380
MvaI	CCWGG	2 cut(s)	264, 320
MwoI	GCNNNNNNNGC	5 cut(s)	80, 512, 518, 521, 530
NciI	CCSGG	1 cut(s)	380
NlaIII	CATG	4 cut(s)	223, 241, 309, 493
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	109
NmuCI	GTSAC	1 cut(s)	226
NsiI	ATGCAT	2 cut(s)	239, 574
NspI	RCATGY	2 cut(s)	241, 493
PaqCI	CACCTGC	1 cut(s)	42
PciI	ACATGT	1 cut(s)	489
PdmI	GAANNNNTTC	1 cut(s)	16
PfeI	GAWTC	2 cut(s)	209, 469
PkrI	GCNGC	3 cut(s)	82, 514, 523
Ppu21I	YACGTR	1 cut(s)	113
PscI	ACATGT	1 cut(s)	489
Psp124BI	GAGCTC	1 cut(s)	548
Psp6I	CCWGG	2 cut(s)	262, 318
PspGI	CCWGG	2 cut(s)	262, 318
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	2 cut(s)	259, 282
RsaI	GTAC	3 cut(s)	115, 377, 494
RsaNI	GTAC	3 cut(s)	114, 376, 493
SacI	GAGCTC	1 cut(s)	548
SatI	GCNGC	3 cut(s)	81, 513, 522
Sau96I	GGNCC	2 cut(s)	259, 282
ScrFI	CCNGG	3 cut(s)	264, 320, 380
SduI	GDGCHC	2 cut(s)	33, 548
SetI	ASST	8 cut(s)	36, 56, 115, 280, 334, 480, 526, 548
SinI	GGWCC	1 cut(s)	282
SnaBI	TACGTA	1 cut(s)	113
Sse9I	AATT	1 cut(s)	151
SsiI	CCGC	2 cut(s)	183, 326
SstI	GAGCTC	1 cut(s)	548
StyD4I	CCNGG	3 cut(s)	262, 318, 378
StyI	CCWWGG	2 cut(s)	255, 501
TaaI	ACNGT	2 cut(s)	143, 553
TaiI	ACGT	2 cut(s)	115, 480
TaqI	TCGA	3 cut(s)	20, 274, 542
TasI	AATT	1 cut(s)	151
TatI	WGTACW	1 cut(s)	492
TfiI	GAWTC	2 cut(s)	209, 469
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	3 cut(s)	80, 512, 521
Tsp45I	GTSAC	1 cut(s)	226
TspDTI	ATGAA	3 cut(s)	147, 291, 424
VneI	GTGCAC	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	282
XceI	RCATGY	2 cut(s)	241, 493
XmnI	GAANNNNTTC	1 cut(s)	16
Zsp2I	ATGCAT	2 cut(s)	239, 574

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.