Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003382.1

Orthogroup ID

OG0010463

Physical Location & Seq

Genomic Coordinates Forward (+)

52339 .. 53325

Gene Structure 987 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003382.1_g000007.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 675 bp

atgcatggccgaagatggctggagtcgccggaaaacacctcaaaactgtcggaaactcataaactttcggccttcgcattcttcctccttactcgttgtatggatgatccaaggccacatgcgcacttgcaacgaagaggcaagtcgaacgtgaccggtgcgctgtcgtgtcgcagtggcttacagcatctgattccggagatgggagaaggaaaaggctcgagtactctggtgcaccttctggtcgtcgttctcagcttagtggcttttgggttcgccattgccgccgagagacgaagaagtgtgggtgtaatatataaggatggacgaacaaatgaaacttactgtgtctgtaactcagatgttgctactggttatggagtgggcggcttcttgtttcttctctcgggggaatccctactcatggaatcatgcttgattggtggtgctacaaaaaatgcctatcacaccaagtaccgggggatgatatatgctcagaacttttcctgtgacgcattgcgaaaaggcgtttttattgctggagcagtatttgtggttgcaacaatggtcctcaacgtctattactacatgtacttcaccaaggcaatcactcctcaggcagctcataaagcaaagcgtacaagctcaaacattgggatggctgggtatgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

224

Amino Acids

24.51

Weight (kDa)

9.51

Isoelectric Point (pI)

52.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010463)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13380
fragaria_vesca	FvH4_4g27350 FvH4_4g27350
malus_domestica	MD13G1042100.v1.1 MD16G1042800.v1.1
prunus_persica	Prupe.1G311300_v2.0.a1 Prupe.1G311300_v2.0.a1
pyrus_communis	pycom13g03630 pycom16g03680
rosa_chinensis	RchiOBHm_Chr2g0089361 RchiOBHm_Chr4g0435161
rosa_laevigata	RLG00000006614
rosa_multiflora	Rmu_sc0003382.1_g000007 Rmu_ssc0000339.1_g000035
rosa_roxburghii	Rroxscaffold_5G00376380
rosa_rugosa	Rorug04G0282700
rosa_samantha	Rh4AG338300 Rh4BG346500 Rh4CG361000 Rh4DG340900
rosa_wichuraiana	Rw4G029510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	123
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	285, 387
AclWI	GGATC	1 cut(s)	101
AcoI	YGGCCR	1 cut(s)	7
AfaI	GTAC	4 cut(s)	226, 476, 593, 640
AfiI	CCNNNNNNNGG	3 cut(s)	203, 424, 477
AflIII	ACRYGT	1 cut(s)	588
AgeI	ACCGGT	1 cut(s)	155
AluBI	AGCT	3 cut(s)	258, 623, 645
AluI	AGCT	3 cut(s)	258, 623, 645
Alw21I	GWGCWC	1 cut(s)	237
Alw26I	GTCTC	1 cut(s)	286
Alw44I	GTGCAC	1 cut(s)	233
AlwI	GGATC	1 cut(s)	101
AlwNI	CAGNNNCTG	1 cut(s)	190
Ama87I	CYCGRG	2 cut(s)	220, 406
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	3 cut(s)	7, 69, 113
ApaLI	GTGCAC	1 cut(s)	233
ApeKI	GCWGC	1 cut(s)	620
AsiGI	ACCGGT	1 cut(s)	155
AspLEI	GCGC	2 cut(s)	124, 163
AspS9I	GGNCC	1 cut(s)	568
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	1 cut(s)	589
AvaI	CYCGRG	2 cut(s)	220, 406
AvaII	GGWCC	1 cut(s)	568
AxyI	CCTNAGG	1 cut(s)	615
BaeGI	GKGCMC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	237
BbvI	GCAGC	1 cut(s)	632
BccI	CCATC	4 cut(s)	9, 196, 317, 652
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	1 cut(s)	286
BisI	GCNGC	3 cut(s)	285, 388, 621
BlsI	GCNGC	3 cut(s)	286, 389, 622
BmcAI	AGTACT	1 cut(s)	226
Bme1390I	CCNGG	1 cut(s)	479
Bme18I	GGWCC	1 cut(s)	568
BmeT110I	CYCGRG	2 cut(s)	220, 406
BmgT120I	GGNCC	1 cut(s)	568
BmrFI	CCNGG	1 cut(s)	479
BmsI	GCATC	1 cut(s)	196
BpmI	CTGGAG	2 cut(s)	41, 561
BpuMI	CCSGG	1 cut(s)	479
BsaJI	CCNNGG	3 cut(s)	110, 478, 600
BsaWI	WCCGGW	2 cut(s)	155, 196
Bsc4I	CCNNNNNNNGG	3 cut(s)	203, 424, 477
Bse118I	RCCGGY	1 cut(s)	155
Bse1I	ACTGG	1 cut(s)	376
Bse21I	CCTNAGG	1 cut(s)	615
Bse3DI	GCAATG	2 cut(s)	279, 515
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	3 cut(s)	110, 478, 600
BseGI	GGATG	4 cut(s)	109, 328, 489, 663
BseLI	CCNNNNNNNGG	3 cut(s)	203, 424, 477
BseMI	GCAATG	2 cut(s)	279, 515
BseMII	CTCAG	4 cut(s)	268, 372, 509, 629
BseNI	ACTGG	1 cut(s)	376
BseRI	GAGGAG	1 cut(s)	603
BseSI	GKGCMC	1 cut(s)	237
BseXI	GCAGC	1 cut(s)	632
BseYI	CCCAGC	1 cut(s)	662
BshFI	GGCC	3 cut(s)	9, 71, 115
BshTI	ACCGGT	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	237
BsiHKCI	CYCGRG	2 cut(s)	220, 406
BsiSI	CCGG	4 cut(s)	29, 156, 197, 478
BslI	CCNNNNNNNGG	3 cut(s)	203, 424, 477
BsmAI	GTCTC	1 cut(s)	286
BsmBI	CGTCTC	1 cut(s)	286
BsmI	GAATGC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	9, 71, 115
BsoBI	CYCGRG	2 cut(s)	220, 406
Bsp1286I	GDGCHC	1 cut(s)	237
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	106
BspACI	CCGC	2 cut(s)	285, 387
BspANI	GGCC	3 cut(s)	9, 71, 115
BspCNI	CTCAG	4 cut(s)	267, 371, 508, 628
BspEI	TCCGGA	1 cut(s)	196
BspPI	GGATC	1 cut(s)	101
BsrDI	GCAATG	2 cut(s)	279, 515
BsrFI	RCCGGY	1 cut(s)	155
BsrI	ACTGG	1 cut(s)	376
BssAI	RCCGGY	1 cut(s)	155
BssECI	CCNNGG	3 cut(s)	110, 478, 600
BssMI	GATC	1 cut(s)	106
BssT1I	CCWWGG	2 cut(s)	110, 600
Bst4CI	ACNGT	2 cut(s)	48, 347
Bst6I	CTCTTC	1 cut(s)	130
BstDEI	CTNAG	5 cut(s)	254, 259, 358, 495, 615
BstF5I	GGATG	4 cut(s)	109, 328, 489, 663
BstHHI	GCGC	2 cut(s)	124, 163
BstKTI	GATC	1 cut(s)	109
BstMAI	GTCTC	1 cut(s)	286
BstMBI	GATC	1 cut(s)	106
BstMWI	GCNNNNNNNGC	5 cut(s)	25, 121, 284, 629, 668
BstNSI	RCATGY	2 cut(s)	122, 592
BstSCI	CCNGG	1 cut(s)	477
BstSLI	GKGCMC	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	632
Bsu36I	CCTNAGG	1 cut(s)	615
BsuRI	GGCC	3 cut(s)	9, 71, 115
BtsCI	GGATG	4 cut(s)	109, 328, 489, 663
BtsI	GCAGTG	1 cut(s)	181
BtsIMutI	CAGTG	1 cut(s)	181
CaiI	CAGNNNCTG	1 cut(s)	190
CfoI	GCGC	2 cut(s)	124, 163
Cfr10I	RCCGGY	1 cut(s)	155
Cfr13I	GGNCC	1 cut(s)	568
CseI	GACGC	1 cut(s)	521
Csp6I	GTAC	4 cut(s)	225, 475, 592, 639
CspAI	ACCGGT	1 cut(s)	155
CviAII	CATG	5 cut(s)	5, 119, 424, 432, 589
CviQI	GTAC	4 cut(s)	225, 475, 592, 639
DdeI	CTNAG	5 cut(s)	254, 259, 358, 495, 615
DpnI	GATC	1 cut(s)	108
DpnII	GATC	1 cut(s)	106
EaeI	YGGCCR	1 cut(s)	7
Eam1104I	CTCTTC	1 cut(s)	130
EarI	CTCTTC	1 cut(s)	130
Eco130I	CCWWGG	2 cut(s)	110, 600
Eco47I	GGWCC	1 cut(s)	568
Eco81I	CCTNAGG	1 cut(s)	615
Eco88I	CYCGRG	2 cut(s)	220, 406
EcoT14I	CCWWGG	2 cut(s)	110, 600
EcoT22I	ATGCAT	2 cut(s)	6, 673
ErhI	CCWWGG	2 cut(s)	110, 600
Esp3I	CGTCTC	1 cut(s)	286
FaeI	CATG	5 cut(s)	8, 122, 427, 435, 592
FatI	CATG	5 cut(s)	4, 118, 423, 431, 588
Fnu4HI	GCNGC	3 cut(s)	285, 388, 621
FokI	GGATG	4 cut(s)	116, 335, 496, 670
Fsp4HI	GCNGC	3 cut(s)	285, 388, 621
FspAI	RTGCGCAY	1 cut(s)	123
FspI	TGCGCA	1 cut(s)	123
GlaI	GCGC	2 cut(s)	123, 162
GluI	GCNGC	3 cut(s)	285, 388, 621
GsaI	CCCAGC	1 cut(s)	666
GsuI	CTGGAG	2 cut(s)	41, 561
HaeIII	GGCC	3 cut(s)	9, 71, 115
HapII	CCGG	4 cut(s)	29, 156, 197, 478
HgaI	GACGC	1 cut(s)	521
HhaI	GCGC	2 cut(s)	124, 163
Hin1II	CATG	5 cut(s)	8, 122, 427, 435, 592
Hin6I	GCGC	2 cut(s)	122, 161
HinP1I	GCGC	2 cut(s)	122, 161
HinfI	GANTC	4 cut(s)	23, 193, 413, 428
HpaII	CCGG	4 cut(s)	29, 156, 197, 478
HphI	GGTGA	1 cut(s)	589
Hpy166II	GTNNAC	1 cut(s)	235
Hpy188I	TCNGA	4 cut(s)	52, 192, 361, 498
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	235
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	3 cut(s)	82, 203, 248
HpyCH4III	ACNGT	2 cut(s)	48, 347
HpyCH4IV	ACGT	2 cut(s)	150, 576
HpyCH4V	TGCA	5 cut(s)	4, 130, 235, 560, 671
HpyF10VI	GCNNNNNNNGC	5 cut(s)	25, 121, 284, 629, 668
HpyF3I	CTNAG	5 cut(s)	254, 259, 358, 495, 615
HpySE526I	ACGT	2 cut(s)	150, 576
Hsp92II	CATG	5 cut(s)	8, 122, 427, 435, 592
HspAI	GCGC	2 cut(s)	122, 161
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	106
LmnI	GCTCC	1 cut(s)	542
Lsp1109I	GCAGC	1 cut(s)	632
LweI	GCATC	1 cut(s)	196
MaeII	ACGT	2 cut(s)	150, 576
MaeIII	GTNAC	3 cut(s)	151, 353, 509
MalI	GATC	1 cut(s)	108
MboI	GATC	1 cut(s)	106
MboII	GAAGA	5 cut(s)	24, 73, 147, 309, 392
MhlI	GDGCHC	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	1 cut(s)	30
MnlI	CCTC	5 cut(s)	49, 95, 131, 581, 624
Mph1103I	ATGCAT	2 cut(s)	6, 673
MroI	TCCGGA	1 cut(s)	196
MslI	CAYNNNNRTG	1 cut(s)	656
MspI	CCGG	4 cut(s)	29, 156, 197, 478
MspR9I	CCNGG	1 cut(s)	479
Mva1269I	GAATGC	1 cut(s)	77
MwoI	GCNNNNNNNGC	5 cut(s)	25, 121, 284, 629, 668
NciI	CCSGG	1 cut(s)	479
NdeII	GATC	1 cut(s)	106
NlaIII	CATG	5 cut(s)	8, 122, 427, 435, 592
NmeAIII	GCCGAG	1 cut(s)	313
NmuCI	GTSAC	2 cut(s)	151, 509
NsbI	TGCGCA	1 cut(s)	123
NsiI	ATGCAT	2 cut(s)	6, 673
NspI	RCATGY	2 cut(s)	122, 592
PaeR7I	CTCGAG	1 cut(s)	220
PciI	ACATGT	1 cut(s)	588
PctI	GAATGC	1 cut(s)	77
PfeI	GAWTC	3 cut(s)	193, 413, 428
PinAI	ACCGGT	1 cut(s)	155
PkrI	GCNGC	3 cut(s)	286, 389, 622
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PscI	ACATGT	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	662
PspPI	GGNCC	1 cut(s)	568
PspXI	VCTCGAGB	1 cut(s)	220
PstNI	CAGNNNCTG	1 cut(s)	190
RsaI	GTAC	4 cut(s)	226, 476, 593, 640
RsaNI	GTAC	4 cut(s)	225, 475, 592, 639
RseI	CAYNNNNRTG	1 cut(s)	656
SatI	GCNGC	3 cut(s)	285, 388, 621
Sau3AI	GATC	1 cut(s)	106
Sau96I	GGNCC	1 cut(s)	568
ScaI	AGTACT	1 cut(s)	226
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	1 cut(s)	479
SduI	GDGCHC	1 cut(s)	237
SetI	ASST	7 cut(s)	41, 153, 240, 260, 579, 625, 647
SfaNI	GCATC	1 cut(s)	196
Sfr274I	CTCGAG	1 cut(s)	220
SinI	GGWCC	1 cut(s)	568
SlaI	CTCGAG	1 cut(s)	220
SmiMI	CAYNNNNRTG	1 cut(s)	656
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SsiI	CCGC	2 cut(s)	285, 387
StyD4I	CCNGG	1 cut(s)	477
StyI	CCWWGG	2 cut(s)	110, 600
TaaI	ACNGT	2 cut(s)	48, 347
TaiI	ACGT	2 cut(s)	153, 579
TaqI	TCGA	2 cut(s)	146, 221
TatI	WGTACW	2 cut(s)	224, 591
TauI	GCSGC	2 cut(s)	287, 390
TfiI	GAWTC	3 cut(s)	193, 413, 428
TscAI	CASTG	1 cut(s)	181
TseFI	GTSAC	2 cut(s)	151, 509
TseI	GCWGC	1 cut(s)	620
Tsp45I	GTSAC	2 cut(s)	151, 509
TspDTI	ATGAA	1 cut(s)	351
TspRI	CASTG	1 cut(s)	181
VneI	GTGCAC	1 cut(s)	233
VpaK11BI	GGWCC	1 cut(s)	568
XceI	RCATGY	2 cut(s)	122, 592
XhoI	CTCGAG	1 cut(s)	220
ZrmI	AGTACT	1 cut(s)	226
Zsp2I	ATGCAT	2 cut(s)	6, 673

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.