Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0007935

Physical Location & Seq

Genomic Coordinates Reverse (-)

2612894 .. 2615676

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g03960.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1503 bp

ATGAACAACATCTCTCACAGCTCTTCCTCCTCCTCCACCTCCTCCTCCATCGACACCGCTGATCCGAATCTAGTTTCGAGTCGGAGGAGCGTGGATGGTGGTCAAGGCTTGGCTGCTGAGCCATCGCGTCGATGGCGTGACATTTTCTGGTTGGGAGTGTTTCTGATTCATTTGATTTTGGTGGGATGTGCTCTTACGGTTCTGGGGACCAATAGGTTTAAGAAAACAGATAGGCTAAACATAGATAGGTACACCCAGAGATTTTTGGAAAATCAAAGGGGGTTGACGGAGAACTATTGGCTGCTTTATGCTCTTGCCGGGGGAGTTGGGACACTTCTTGGTTGGACATGGTTGTTTTTCCTCCGTTCTCAAGCAACTCACATGATGAAGGTTGCGGTTCACATCTTGACTACTTATCTTGCTGTGATTAGTGTTCTATTGTTTTGGATGGAACAAATTTTCTGGGGTGTTGCATTTGCGATTGGTGCTGTATTGCAGTTCATGTATGTTCTTTCAATTGTGGGCAGACTTCCCTTTACCATGCTGGTGCTGCAAGCAGCTGTCAAGATGGTATGGAGTCTTCGTGAAGTTATGAGGGTAGCGTATGCTTTCATGCTTATTATGCTTTTATGGATGGTATTATGGTCCTTCGGGGCAGCTGGTGTTGTAGCTTCAAGCATTGGAGATGGTGGACGCTGGTGGCTTCTAGTGGTTCTCTCTATAAGCTTATTTTGGACGGGTGCAGTACTCTGTAATACTGTGCATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTATCCATGGTGGTAGGGAGGCACCATCAATGCCTCCAAACTCACTGATGAAGTCTCTTCGGTATGCAGTCACAACTTCTTTTGGCAGTATCTGCTATGGTTCACTTTTCACAGCTTTCATTCGGACACTGCGGTGGAAGATCAGGGGAGTCCGGTCCAAGATAGGCAACAACGAGTGCCTACTTTGCTGTGTTGATTTTCTCTTTCATCTAGTGGAGACTCTTGTCCGCTTCTTTAACAAGTATGCCTATGTGCAGATAGCTGTTTCTGGCAAAGGCTTCAATCATTCAGCGAGGGATGCCTGGGAGTTATTTCAGTCTACTGGAGTGGAGGCTCTTGTTGCCTACGATTGTTCAGGTGCTGTTTTATTGATGGGAACAGTTTTGGGCGGGCTTATTACTGGAACTTCCGCGGGGATCTGGACATGGATTAAGTATAGGGACAGAGTAGTTATGGTGGGGTCCACTGCAATGTTGATGGGAATGGTCTTGGTGGGGCTGGCGATGGCGGTTGTGGAAAGTGCCGTTACATCTATTTATATTTGTTATGCAGAAGACCCCTTGTTGATTCGCAGGTGGGATGCTGAGTTCTTCAACCAGATGTCGGAGATGCTACACCAGCGTCTTCAACATAGGAGCTCACGAGTGAGGGAAGTGTTCACCCACCACCACTTTGATAACCACACACAAGAAACACTCCCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

501

Amino Acids

56.1

Weight (kDa)

9.35

Isoelectric Point (pI)

41.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25500 AT1G25500 AT1G25500
fragaria_vesca	FvH4_4g27760 FvH4_4g27760 FvH4_4g27760 FvH4_4g27760
malus_domestica	MD13G1044800.v1.1 MD16G1046200.v1.1
prunus_persica	Prupe.1G307200_v2.0.a1 Prupe.1G307200_v2.0.a1 Prupe.1G307200_v2.0.a1
pyrus_communis	pycom13g03960
rosa_chinensis	RchiOBHm_Chr4g0435621
rosa_laevigata	RLG00000006576
rosa_multiflora	Rmu_co8343623.1_g000001 Rmu_sc0000051.1_g000003
rosa_rugosa	Rorug04G0287200 Rorug04G0287300.1
rosa_samantha	Rh4AG342500 Rh4BG350800 Rh4CG365500 Rh4DG345200
rosa_wichuraiana	Rw4G029890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1359
Acc36I	ACCTGC	1 cut(s)	1359
AccB1I	GGYRCC	1 cut(s)	817
AccI	GTMKAC	1 cut(s)	1115
AccII	CGCG	2 cut(s)	127, 1208
AciI	CCGC	8 cut(s)	57, 395, 928, 1024, 1185, 1206, 1208, 1304
AclWI	GGATC	2 cut(s)	56, 1220
AcsI	RAATTY	1 cut(s)	456
AfaI	GTAC	2 cut(s)	251, 747
AfiI	CCNNNNNNNGG	1 cut(s)	1399
AgsI	TTSAA	5 cut(s)	516, 675, 1078, 1390, 1424
AjnI	CCWGG	1 cut(s)	1097
AleI	CACNNNNGTG	1 cut(s)	928
AloI	GAACNNNNNNTCC	2 cut(s)	1367, 1399
AluBI	AGCT	8 cut(s)	21, 560, 659, 671, 726, 911, 1058, 1434
AluI	AGCT	8 cut(s)	21, 560, 659, 671, 726, 911, 1058, 1434
Alw21I	GWGCWC	2 cut(s)	193, 1436
Alw26I	GTCTC	2 cut(s)	855, 1007
AlwI	GGATC	2 cut(s)	56, 1220
AlwNI	CAGNNNCTG	2 cut(s)	888, 1157
ApeKI	GCWGC	5 cut(s)	113, 301, 550, 557, 656
ApoI	RAATTY	1 cut(s)	456
AspS9I	GGNCC	4 cut(s)	207, 645, 951, 1257
AsuC2I	CCSGG	1 cut(s)	319
AsuHPI	GGTGA	1 cut(s)	1447
AvaII	GGWCC	4 cut(s)	207, 645, 951, 1257
BanI	GGYRCC	1 cut(s)	817
BanII	GRGCYC	1 cut(s)	1436
BarI	GAAGNNNNNNTAC	2 cut(s)	564, 596
BauI	CACGAG	1 cut(s)	1437
BbsI	GAAGAC	3 cut(s)	572, 1356, 1412
Bbv12I	GWGCWC	2 cut(s)	193, 1436
BbvI	GCAGC	5 cut(s)	100, 288, 537, 569, 668
BceAI	ACGGC	1 cut(s)	1304
BciT130I	CCWGG	1 cut(s)	1099
BcnI	CCSGG	1 cut(s)	319
BcoDI	GTCTC	2 cut(s)	855, 1007
BfaI	CTAG	3 cut(s)	71, 707, 1007
BfuAI	ACCTGC	1 cut(s)	1359
BisI	GCNGC	5 cut(s)	114, 302, 551, 558, 657
BlpI	GCTNAGC	1 cut(s)	117
BlsI	GCNGC	5 cut(s)	115, 303, 552, 559, 658
BmcAI	AGTACT	1 cut(s)	747
Bme1390I	CCNGG	2 cut(s)	319, 1099
Bme18I	GGWCC	4 cut(s)	207, 645, 951, 1257
BmgT120I	GGNCC	4 cut(s)	207, 645, 951, 1257
BmiI	GGNNCC	3 cut(s)	208, 819, 1258
BmrFI	CCNGG	2 cut(s)	319, 1099
BmsI	GCATC	3 cut(s)	1084, 1366, 1395
BoxI	GACNNNNGTC	1 cut(s)	1019
BpiI	GAAGAC	3 cut(s)	572, 1356, 1412
BpmI	CTGGAG	1 cut(s)	1140
Bpu1102I	GCTNAGC	1 cut(s)	117
BpuEI	CTTGAG	1 cut(s)	354
BpuMI	CCSGG	1 cut(s)	319
BsaBI	GATNNNNATC	1 cut(s)	66
BsaJI	CCNNGG	4 cut(s)	318, 802, 1098, 1206
BsaWI	WCCGGW	1 cut(s)	948
BsaXI	ACNNNNNCTCC	2 cut(s)	568, 598
Bsc4I	CCNNNNNNNGG	1 cut(s)	1399
Bse1I	ACTGG	2 cut(s)	1123, 1201
Bse3DI	GCAATG	1 cut(s)	1272
Bse8I	GATNNNNATC	1 cut(s)	66
BseBI	CCWGG	1 cut(s)	1099
BseDI	CCNNGG	4 cut(s)	318, 802, 1098, 1206
BseGI	GGATG	7 cut(s)	100, 191, 453, 639, 786, 1099, 1381
BseJI	GATNNNNATC	1 cut(s)	66
BseLI	CCNNNNNNNGG	1 cut(s)	1399
BseMI	GCAATG	1 cut(s)	1272
BseMII	CTCAG	2 cut(s)	108, 1371
BseNI	ACTGG	2 cut(s)	1123, 1201
BseRI	GAGGAG	5 cut(s)	19, 22, 31, 34, 100
BseXI	GCAGC	5 cut(s)	100, 288, 537, 569, 668
BsgI	GTGCAG	2 cut(s)	762, 1070
Bsh1236I	CGCG	2 cut(s)	127, 1208
BshNI	GGYRCC	1 cut(s)	817
BsiHKAI	GWGCWC	2 cut(s)	193, 1436
BsiSI	CCGG	2 cut(s)	318, 949
BslFI	GGGAC	3 cut(s)	220, 343, 1250
BslI	CCNNNNNNNGG	1 cut(s)	1399
BsmAI	GTCTC	2 cut(s)	855, 1007
BsmFI	GGGAC	3 cut(s)	220, 343, 1250
Bsp1286I	GDGCHC	2 cut(s)	193, 1436
Bsp143I	GATC	3 cut(s)	61, 936, 1212
Bsp1720I	GCTNAGC	1 cut(s)	117
Bsp19I	CCATGG	1 cut(s)	802
BspACI	CCGC	8 cut(s)	57, 395, 928, 1024, 1185, 1206, 1208, 1304
BspCNI	CTCAG	2 cut(s)	109, 1372
BspFNI	CGCG	2 cut(s)	127, 1208
BspLI	GGNNCC	3 cut(s)	208, 819, 1258
BspMI	ACCTGC	1 cut(s)	1359
BspPI	GGATC	2 cut(s)	56, 1220
BspQI	GCTCTTC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	817
BsrDI	GCAATG	1 cut(s)	1272
BsrI	ACTGG	2 cut(s)	1123, 1201
BssECI	CCNNGG	4 cut(s)	318, 802, 1098, 1206
BssMI	GATC	3 cut(s)	61, 936, 1212
BssSI	CACGAG	1 cut(s)	1437
BssT1I	CCWWGG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	1437
Bst2UI	CCWGG	1 cut(s)	1099
Bst4CI	ACNGT	3 cut(s)	199, 760, 1177
Bst6I	CTCTTC	2 cut(s)	28, 858
BstAPI	GCANNNNNTGC	1 cut(s)	888
BstC8I	GCNNGC	3 cut(s)	555, 1187, 1296
BstDEI	CTNAG	2 cut(s)	117, 1380
BstDSI	CCRYGG	2 cut(s)	802, 1206
BstF5I	GGATG	7 cut(s)	100, 191, 453, 639, 786, 1099, 1381
BstFNI	CGCG	2 cut(s)	127, 1208
BstKTI	GATC	3 cut(s)	64, 939, 1215
BstMAI	GTCTC	2 cut(s)	855, 1007
BstMBI	GATC	3 cut(s)	61, 936, 1212
BstMWI	GCNNNNNNNGC	9 cut(s)	133, 485, 550, 622, 888, 981, 1094, 1136, 1414
BstNI	CCWGG	1 cut(s)	1099
BstNSI	RCATGY	1 cut(s)	767
BstPAI	GACNNNNGTC	1 cut(s)	1019
BstSCI	CCNGG	2 cut(s)	317, 1097
BstUI	CGCG	2 cut(s)	127, 1208
BstV1I	GCAGC	5 cut(s)	100, 288, 537, 569, 668
BstV2I	GAAGAC	3 cut(s)	572, 1356, 1412
BstX2I	RGATCY	1 cut(s)	1212
BstYI	RGATCY	1 cut(s)	1212
BtgI	CCRYGG	2 cut(s)	802, 1206
BtgZI	GCGATG	2 cut(s)	108, 1313
BtsCI	GGATG	7 cut(s)	100, 191, 453, 639, 786, 1099, 1381
BtsI	GCAGTG	2 cut(s)	923, 1260
BtsIMutI	CAGTG	3 cut(s)	839, 923, 1260
BveI	ACCTGC	1 cut(s)	1359
Cac8I	GCNNGC	3 cut(s)	555, 1187, 1296
CaiI	CAGNNNCTG	2 cut(s)	888, 1157
Cfr13I	GGNCC	4 cut(s)	207, 645, 951, 1257
Cfr42I	CCGCGG	1 cut(s)	1209
CseI	GACGC	3 cut(s)	116, 702, 1406
Csp6I	GTAC	2 cut(s)	250, 746
CviAII	CATG	8 cut(s)	348, 382, 502, 541, 613, 764, 803, 1221
CviQI	GTAC	2 cut(s)	250, 746
DdeI	CTNAG	2 cut(s)	117, 1380
DpnI	GATC	3 cut(s)	63, 938, 1214
DpnII	GATC	3 cut(s)	61, 936, 1212
Eam1104I	CTCTTC	2 cut(s)	28, 858
EarI	CTCTTC	2 cut(s)	28, 858
Ecl136II	GAGCTC	1 cut(s)	1434
Eco130I	CCWWGG	1 cut(s)	802
Eco24I	GRGCYC	1 cut(s)	1436
Eco47I	GGWCC	4 cut(s)	207, 645, 951, 1257
Eco53kI	GAGCTC	1 cut(s)	1434
EcoICRI	GAGCTC	1 cut(s)	1434
EcoRII	CCWGG	1 cut(s)	1097
EcoT14I	CCWWGG	1 cut(s)	802
EcoT38I	GRGCYC	1 cut(s)	1436
ErhI	CCWWGG	1 cut(s)	802
FaeI	CATG	8 cut(s)	351, 385, 505, 544, 616, 767, 806, 1224
FaqI	GGGAC	3 cut(s)	220, 343, 1250
FatI	CATG	8 cut(s)	347, 381, 501, 540, 612, 763, 802, 1220
FauI	CCCGC	2 cut(s)	1178, 1201
FblI	GTMKAC	1 cut(s)	1115
Fnu4HI	GCNGC	5 cut(s)	114, 302, 551, 558, 657
FokI	GGATG	7 cut(s)	107, 198, 460, 646, 793, 1106, 1388
FriOI	GRGCYC	1 cut(s)	1436
Fsp4HI	GCNGC	5 cut(s)	114, 302, 551, 558, 657
FspBI	CTAG	3 cut(s)	71, 707, 1007
GluI	GCNGC	5 cut(s)	114, 302, 551, 558, 657
GsuI	CTGGAG	1 cut(s)	1140
HapII	CCGG	2 cut(s)	318, 949
HgaI	GACGC	3 cut(s)	116, 702, 1406
Hin1II	CATG	8 cut(s)	351, 385, 505, 544, 616, 767, 806, 1224
HincII	GTYRAC	1 cut(s)	285
HindII	GTYRAC	1 cut(s)	285
HindIII	AAGCTT	1 cut(s)	724
HinfI	GANTC	7 cut(s)	67, 79, 166, 577, 945, 1015, 1363
HpaII	CCGG	2 cut(s)	318, 949
HphI	GGTGA	1 cut(s)	1447
Hpy166II	GTNNAC	8 cut(s)	252, 285, 400, 692, 899, 1116, 1260, 1455
Hpy188I	TCNGA	5 cut(s)	66, 84, 165, 921, 1402
Hpy188III	TCNNGA	5 cut(s)	406, 565, 584, 1216, 1437
Hpy8I	GTNNAC	8 cut(s)	252, 285, 400, 692, 899, 1116, 1260, 1455
Hpy99I	CGWCG	1 cut(s)	132
HpyAV	CCTTC	2 cut(s)	382, 658
HpyCH4III	ACNGT	3 cut(s)	199, 760, 1177
HpyCH4V	TGCA	9 cut(s)	473, 496, 553, 743, 763, 863, 1051, 1265, 1346
HpyF10VI	GCNNNNNNNGC	9 cut(s)	133, 485, 550, 622, 888, 981, 1094, 1136, 1414
HpyF3I	CTNAG	2 cut(s)	117, 1380
Hsp92II	CATG	8 cut(s)	351, 385, 505, 544, 616, 767, 806, 1224
KspI	CCGCGG	1 cut(s)	1209
Kzo9I	GATC	3 cut(s)	61, 936, 1212
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	2 cut(s)	87, 1431
Lsp1109I	GCAGC	5 cut(s)	100, 288, 537, 569, 668
LweI	GCATC	3 cut(s)	1084, 1366, 1395
MaeI	CTAG	3 cut(s)	71, 707, 1007
MaeIII	GTNAC	3 cut(s)	137, 865, 1321
MalI	GATC	3 cut(s)	63, 938, 1214
MboI	GATC	3 cut(s)	61, 936, 1212
MboII	GAAGA	7 cut(s)	15, 572, 845, 946, 1361, 1378, 1412
MfeI	CAATTG	1 cut(s)	516
MflI	RGATCY	1 cut(s)	1212
MhlI	GDGCHC	2 cut(s)	193, 1436
MluCI	AATT	2 cut(s)	456, 516
MlyI	GAGTC	4 cut(s)	88, 586, 954, 1009
MmeI	TCCRAC	3 cut(s)	62, 323, 1380
MseI	TTAA	3 cut(s)	219, 1032, 1227
MslI	CAYNNNNRTG	3 cut(s)	545, 928, 1265
MspA1I	CMGCKG	4 cut(s)	59, 560, 659, 1208
MspI	CCGG	2 cut(s)	318, 949
MspR9I	CCNGG	2 cut(s)	319, 1099
MunI	CAATTG	1 cut(s)	516
MvaI	CCWGG	1 cut(s)	1099
MvnI	CGCG	2 cut(s)	127, 1208
MwoI	GCNNNNNNNGC	9 cut(s)	133, 485, 550, 622, 888, 981, 1094, 1136, 1414
NciI	CCSGG	1 cut(s)	319
NcoI	CCATGG	1 cut(s)	802
NdeII	GATC	3 cut(s)	61, 936, 1212
NlaIII	CATG	8 cut(s)	351, 385, 505, 544, 616, 767, 806, 1224
NlaIV	GGNNCC	3 cut(s)	208, 819, 1258
NmuCI	GTSAC	2 cut(s)	137, 865
NspI	RCATGY	1 cut(s)	767
OliI	CACNNNNGTG	1 cut(s)	928
PaqCI	CACCTGC	1 cut(s)	1359
PciSI	GCTCTTC	1 cut(s)	28
PfeI	GAWTC	3 cut(s)	67, 166, 1363
PkrI	GCNGC	5 cut(s)	115, 303, 552, 559, 658
PleI	GAGTC	4 cut(s)	87, 585, 953, 1009
PpsI	GAGTC	4 cut(s)	87, 585, 953, 1009
PshAI	GACNNNNGTC	1 cut(s)	1019
Psp124BI	GAGCTC	1 cut(s)	1436
Psp6I	CCWGG	1 cut(s)	1097
PspGI	CCWGG	1 cut(s)	1097
PspN4I	GGNNCC	3 cut(s)	208, 819, 1258
PspPI	GGNCC	4 cut(s)	207, 645, 951, 1257
PstNI	CAGNNNCTG	2 cut(s)	888, 1157
PsuI	RGATCY	1 cut(s)	1212
PvuII	CAGCTG	2 cut(s)	560, 659
RsaI	GTAC	2 cut(s)	251, 747
RsaNI	GTAC	2 cut(s)	250, 746
RseI	CAYNNNNRTG	3 cut(s)	545, 928, 1265
SacI	GAGCTC	1 cut(s)	1436
SacII	CCGCGG	1 cut(s)	1209
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	3 cut(s)	219, 1032, 1227
SatI	GCNGC	5 cut(s)	114, 302, 551, 558, 657
Sau3AI	GATC	3 cut(s)	61, 936, 1212
Sau96I	GGNCC	4 cut(s)	207, 645, 951, 1257
ScaI	AGTACT	1 cut(s)	747
SchI	GAGTC	4 cut(s)	88, 586, 954, 1009
ScrFI	CCNGG	2 cut(s)	319, 1099
SduI	GDGCHC	2 cut(s)	193, 1436
SfaNI	GCATC	3 cut(s)	1084, 1366, 1395
Sfr303I	CCGCGG	1 cut(s)	1209
SgrBI	CCGCGG	1 cut(s)	1209
SinI	GGWCC	4 cut(s)	207, 645, 951, 1257
SmiMI	CAYNNNNRTG	3 cut(s)	545, 928, 1265
SmlI	CTYRAG	1 cut(s)	369
SmoI	CTYRAG	1 cut(s)	369
Sse9I	AATT	2 cut(s)	456, 516
SsiI	CCGC	8 cut(s)	57, 395, 928, 1024, 1185, 1206, 1208, 1304
SspMI	CTAG	3 cut(s)	71, 707, 1007
SstI	GAGCTC	1 cut(s)	1436
StyD4I	CCNGG	2 cut(s)	317, 1097
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	3 cut(s)	199, 760, 1177
TaqI	TCGA	3 cut(s)	51, 77, 130
TasI	AATT	2 cut(s)	456, 516
TatI	WGTACW	1 cut(s)	745
TfiI	GAWTC	3 cut(s)	67, 166, 1363
Tru1I	TTAA	3 cut(s)	219, 1032, 1227
Tru9I	TTAA	3 cut(s)	219, 1032, 1227
TscAI	CASTG	3 cut(s)	846, 930, 1267
TseFI	GTSAC	2 cut(s)	137, 865
TseI	GCWGC	5 cut(s)	113, 301, 550, 557, 656
Tsp45I	GTSAC	2 cut(s)	137, 865
TspDTI	ATGAA	8 cut(s)	17, 158, 401, 490, 601, 860, 904, 992
TspGWI	ACGGA	2 cut(s)	302, 353
TspRI	CASTG	3 cut(s)	846, 930, 1267
VpaK11BI	GGWCC	4 cut(s)	207, 645, 951, 1257
XapI	RAATTY	1 cut(s)	456
XceI	RCATGY	1 cut(s)	767
XcmI	CCANNNNNNNNNTGG	1 cut(s)	129
XmiI	GTMKAC	1 cut(s)	1115
XspI	CTAG	3 cut(s)	71, 707, 1007
ZrmI	AGTACT	1 cut(s)	747

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.