Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000051.1

Orthogroup ID

OG0007935

Physical Location & Seq

Genomic Coordinates Reverse (-)

7610 .. 9877

Gene Structure 2268 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000051.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgctcgtgctacaagcagctgtcaagatggtatggagtctacctgaagttatgagggtagcatatgcattcatgcttattatgcttttatggatgggaatatggtcctttggggctgctggtgttgtagctttaagcattggagatggtggacgctggtggcttcttgtggttctctctgtaagcttattttggacgggtgctgttctctgtaatactgtacatgttatagtgtctgggatggtgtttcttgttctttcccatggtggtcgagaggcctcatcaatgcctccgaagtcactaatgaagtctcttcggtatgcagtcacaacttcttttggcagcatctgctatggttcacttttcacagctgccattcgaactttgcgctggaagatcaggggagttcggtccaagattggcaacaatgagtgtctactttgctgtgttgatttcctctttcatcttgtggagacacttgtgcgattctttaataagtatgcttacgtccagatagctgtttctggcaaaggtttcaatcattcagcgagggatgcttgggagttatttcagtctactggagtcgaggcactcattgcctatgattgctcaggtgctgtattattgatgggcacactgttgggtgggcttattaccggaacttgctcggggatctggacatggattaaatatagggacagagtggctatggttgggtccactgcaatgttgatgggaatgatcctggtgggattagcaatggtggttgtggaaagtgctgtcacatctatctacatctgttatgcagaagacccgttgttgattcataggtgggatactgaattcttcaaccagatgtcggagatgctacaccagcgtcttcaacataggagtgcccgggcaagggaagtgttgacccacaatcgggttgataaccaccacacactcgaaacacttcctttttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Choline_transpo

Protein Analysis

321

Amino Acids

35.79

Weight (kDa)

8.93

Isoelectric Point (pI)

31.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007935)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25500 AT1G25500 AT1G25500
fragaria_vesca	FvH4_4g27760 FvH4_4g27760 FvH4_4g27760 FvH4_4g27760
malus_domestica	MD13G1044800.v1.1 MD16G1046200.v1.1
prunus_persica	Prupe.1G307200_v2.0.a1 Prupe.1G307200_v2.0.a1 Prupe.1G307200_v2.0.a1
pyrus_communis	pycom13g03960
rosa_chinensis	RchiOBHm_Chr4g0435621
rosa_laevigata	RLG00000006576
rosa_multiflora	Rmu_co8343623.1_g000001 Rmu_sc0000051.1_g000003
rosa_rugosa	Rorug04G0287200 Rorug04G0287300.1
rosa_samantha	Rh4AG342500 Rh4BG350800 Rh4CG365500 Rh4DG345200
rosa_wichuraiana	Rw4G029890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	3 cut(s)	40, 436, 575
AclWI	GGATC	2 cut(s)	680, 736
AcsI	RAATTY	1 cut(s)	842
AcuI	CTGAAG	1 cut(s)	66
AfaI	GTAC	1 cut(s)	222
AfiI	CCNNNNNNNGG	5 cut(s)	859, 903, 904, 924, 925
AflIII	ACRYGT	1 cut(s)	223
AgsI	TTSAA	3 cut(s)	538, 850, 884
AjnI	CCWGG	1 cut(s)	744
AluBI	AGCT	5 cut(s)	20, 131, 186, 371, 518
AluI	AGCT	5 cut(s)	20, 131, 186, 371, 518
Alw26I	GTCTC	2 cut(s)	315, 467
AlwI	GGATC	2 cut(s)	680, 736
AlwNI	CAGNNNCTG	2 cut(s)	348, 617
Ama87I	CYCGRG	2 cut(s)	667, 897
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	4 cut(s)	17, 116, 342, 371
ApoI	RAATTY	1 cut(s)	842
Asp700I	GAANNNNTTC	1 cut(s)	954
AspLEI	GCGC	1 cut(s)	390
AspS9I	GGNCC	3 cut(s)	105, 411, 717
AsuC2I	CCSGG	2 cut(s)	898, 899
AsuII	TTCGAA	1 cut(s)	379
AvaI	CYCGRG	2 cut(s)	667, 897
AvaII	GGWCC	3 cut(s)	105, 411, 717
BaeGI	GKGCMC	2 cut(s)	635, 898
BauI	CACGAG	1 cut(s)	5
BbsI	GAAGAC	2 cut(s)	816, 872
BbvI	GCAGC	4 cut(s)	29, 103, 354, 358
BccI	CCATC	6 cut(s)	22, 88, 140, 235, 622, 727
BciT130I	CCWGG	1 cut(s)	746
BciVI	GTATCC	1 cut(s)	829
BcnI	CCSGG	2 cut(s)	898, 899
BcoDI	GTCTC	2 cut(s)	315, 467
BfuI	GTATCC	1 cut(s)	829
BisI	GCNGC	4 cut(s)	18, 117, 343, 372
BlsI	GCNGC	4 cut(s)	19, 118, 344, 373
Bme1390I	CCNGG	3 cut(s)	746, 898, 899
Bme18I	GGWCC	3 cut(s)	105, 411, 717
BmeT110I	CYCGRG	2 cut(s)	667, 897
BmgT120I	GGNCC	3 cut(s)	105, 411, 717
BmiI	GGNNCC	1 cut(s)	718
BmrFI	CCNGG	3 cut(s)	746, 898, 899
BmsI	GCATC	3 cut(s)	354, 544, 855
BpiI	GAAGAC	2 cut(s)	816, 872
BpmI	CTGGAG	1 cut(s)	600
Bpu10I	CCTNAGC	1 cut(s)	610
Bpu14I	TTCGAA	1 cut(s)	379
BpuMI	CCSGG	2 cut(s)	898, 899
BsaJI	CCNNGG	2 cut(s)	262, 897
BsaWI	WCCGGW	1 cut(s)	656
Bsc4I	CCNNNNNNNGG	5 cut(s)	859, 903, 904, 924, 925
Bse1I	ACTGG	1 cut(s)	583
Bse3DI	GCAATG	3 cut(s)	594, 732, 765
BseBI	CCWGG	1 cut(s)	746
BseDI	CCNNGG	2 cut(s)	262, 897
BseGI	GGATG	3 cut(s)	99, 246, 559
BseLI	CCNNNNNNNGG	5 cut(s)	859, 903, 904, 924, 925
BseMI	GCAATG	3 cut(s)	594, 732, 765
BseMII	CTCAG	1 cut(s)	624
BseNI	ACTGG	1 cut(s)	583
BseSI	GKGCMC	2 cut(s)	635, 898
BseXI	GCAGC	4 cut(s)	29, 103, 354, 358
BshFI	GGCC	1 cut(s)	278
BsiHKCI	CYCGRG	2 cut(s)	667, 897
BsiSI	CCGG	2 cut(s)	657, 898
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	5 cut(s)	859, 903, 904, 924, 925
BsmAI	GTCTC	2 cut(s)	315, 467
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	68
BsnI	GGCC	1 cut(s)	278
BsoBI	CYCGRG	2 cut(s)	667, 897
Bsp119I	TTCGAA	1 cut(s)	379
Bsp1286I	GDGCHC	2 cut(s)	635, 898
Bsp1407I	TGTACA	1 cut(s)	220
Bsp143I	GATC	3 cut(s)	396, 672, 741
Bsp19I	CCATGG	1 cut(s)	262
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	623
BspLI	GGNNCC	1 cut(s)	718
BspPI	GGATC	2 cut(s)	680, 736
BspT104I	TTCGAA	1 cut(s)	379
BsrDI	GCAATG	3 cut(s)	594, 732, 765
BsrGI	TGTACA	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	583
BssECI	CCNNGG	2 cut(s)	262, 897
BssMI	GATC	3 cut(s)	396, 672, 741
BssSI	CACGAG	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	262
Bst2BI	CACGAG	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	746
Bst4CI	ACNGT	2 cut(s)	220, 639
Bst6I	CTCTTC	1 cut(s)	318
BstAPI	GCANNNNNTGC	2 cut(s)	348, 596
BstAUI	TGTACA	1 cut(s)	220
BstBI	TTCGAA	1 cut(s)	379
BstDEI	CTNAG	1 cut(s)	610
BstDSI	CCRYGG	1 cut(s)	262
BstF5I	GGATG	3 cut(s)	99, 246, 559
BstHHI	GCGC	1 cut(s)	390
BstKTI	GATC	3 cut(s)	399, 675, 744
BstMAI	GTCTC	2 cut(s)	315, 467
BstMBI	GATC	3 cut(s)	396, 672, 741
BstMWI	GCNNNNNNNGC	5 cut(s)	82, 348, 554, 596, 874
BstNI	CCWGG	1 cut(s)	746
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	3 cut(s)	744, 896, 897
BstSLI	GKGCMC	2 cut(s)	635, 898
BstV1I	GCAGC	4 cut(s)	29, 103, 354, 358
BstV2I	GAAGAC	2 cut(s)	816, 872
BstX2I	RGATCY	1 cut(s)	672
BstYI	RGATCY	1 cut(s)	672
BsuI	GTATCC	1 cut(s)	829
BsuRI	GGCC	1 cut(s)	278
BtgI	CCRYGG	1 cut(s)	262
BtsCI	GGATG	3 cut(s)	99, 246, 559
BtsI	GCAGTG	1 cut(s)	720
BtsIMutI	CAGTG	2 cut(s)	635, 720
CaiI	CAGNNNCTG	2 cut(s)	348, 617
CfoI	GCGC	1 cut(s)	390
Cfr13I	GGNCC	3 cut(s)	105, 411, 717
Cfr9I	CCCGGG	1 cut(s)	897
CseI	GACGC	2 cut(s)	162, 866
Csp6I	GTAC	1 cut(s)	221
CviAII	CATG	4 cut(s)	73, 224, 263, 681
CviQI	GTAC	1 cut(s)	221
DdeI	CTNAG	1 cut(s)	610
DpnI	GATC	3 cut(s)	398, 674, 743
DpnII	GATC	3 cut(s)	396, 672, 741
Eam1104I	CTCTTC	1 cut(s)	318
EarI	CTCTTC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	262
Eco147I	AGGCCT	1 cut(s)	278
Eco47I	GGWCC	3 cut(s)	105, 411, 717
Eco57I	CTGAAG	1 cut(s)	66
Eco88I	CYCGRG	2 cut(s)	667, 897
EcoRI	GAATTC	1 cut(s)	842
EcoRII	CCWGG	1 cut(s)	744
EcoT14I	CCWWGG	1 cut(s)	262
EcoT22I	ATGCAT	1 cut(s)	70
ErhI	CCWWGG	1 cut(s)	262
FaeI	CATG	4 cut(s)	76, 227, 266, 684
FaqI	GGGAC	1 cut(s)	710
FatI	CATG	4 cut(s)	72, 223, 262, 680
FauNDI	CATATG	1 cut(s)	64
FblI	GTMKAC	3 cut(s)	40, 436, 575
Fnu4HI	GCNGC	4 cut(s)	18, 117, 343, 372
FokI	GGATG	3 cut(s)	106, 253, 566
Fsp4HI	GCNGC	4 cut(s)	18, 117, 343, 372
GlaI	GCGC	1 cut(s)	389
GluI	GCNGC	4 cut(s)	18, 117, 343, 372
GsuI	CTGGAG	1 cut(s)	600
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	2 cut(s)	657, 898
HgaI	GACGC	2 cut(s)	162, 866
HhaI	GCGC	1 cut(s)	390
Hin1II	CATG	4 cut(s)	76, 227, 266, 684
Hin6I	GCGC	1 cut(s)	388
HinP1I	GCGC	1 cut(s)	388
HincII	GTYRAC	1 cut(s)	915
HindII	GTYRAC	1 cut(s)	915
HindIII	AAGCTT	1 cut(s)	184
HinfI	GANTC	4 cut(s)	37, 486, 582, 823
HpaII	CCGG	2 cut(s)	657, 898
Hpy166II	GTNNAC	7 cut(s)	41, 152, 359, 437, 576, 720, 915
Hpy188I	TCNGA	2 cut(s)	294, 862
Hpy188III	TCNNGA	4 cut(s)	25, 272, 511, 676
Hpy8I	GTNNAC	7 cut(s)	41, 152, 359, 437, 576, 720, 915
HpyCH4III	ACNGT	2 cut(s)	220, 639
HpyCH4IV	ACGT	1 cut(s)	507
HpyCH4V	TGCA	4 cut(s)	68, 323, 725, 806
HpyF10VI	GCNNNNNNNGC	5 cut(s)	82, 348, 554, 596, 874
HpyF3I	CTNAG	1 cut(s)	610
HpySE526I	ACGT	1 cut(s)	507
Hsp92II	CATG	4 cut(s)	76, 227, 266, 684
HspAI	GCGC	1 cut(s)	388
Kzo9I	GATC	3 cut(s)	396, 672, 741
Lsp1109I	GCAGC	4 cut(s)	29, 103, 354, 358
LweI	GCATC	3 cut(s)	354, 544, 855
MaeII	ACGT	1 cut(s)	507
MaeIII	GTNAC	3 cut(s)	297, 325, 781
MalI	GATC	3 cut(s)	398, 674, 743
MboI	GATC	3 cut(s)	396, 672, 741
MboII	GAAGA	5 cut(s)	305, 406, 821, 838, 872
MflI	RGATCY	1 cut(s)	672
MhlI	GDGCHC	2 cut(s)	635, 898
MluCI	AATT	1 cut(s)	842
MlyI	GAGTC	2 cut(s)	46, 591
MmeI	TCCRAC	1 cut(s)	840
MnlI	CCTC	7 cut(s)	48, 268, 289, 300, 467, 543, 580
Mph1103I	ATGCAT	1 cut(s)	70
MroXI	GAANNNNTTC	1 cut(s)	954
MseI	TTAA	3 cut(s)	134, 492, 687
MslI	CAYNNNNRTG	2 cut(s)	725, 891
MspA1I	CMGCKG	2 cut(s)	20, 371
MspI	CCGG	2 cut(s)	657, 898
MspR9I	CCNGG	3 cut(s)	746, 898, 899
Mva1269I	GAATGC	1 cut(s)	68
MvaI	CCWGG	1 cut(s)	746
MwoI	GCNNNNNNNGC	5 cut(s)	82, 348, 554, 596, 874
NciI	CCSGG	2 cut(s)	898, 899
NcoI	CCATGG	1 cut(s)	262
NdeI	CATATG	1 cut(s)	64
NdeII	GATC	3 cut(s)	396, 672, 741
NlaIII	CATG	4 cut(s)	76, 227, 266, 684
NlaIV	GGNNCC	1 cut(s)	718
NmuCI	GTSAC	3 cut(s)	297, 325, 781
NsiI	ATGCAT	1 cut(s)	70
NspI	RCATGY	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	379
PceI	AGGCCT	1 cut(s)	278
PciI	ACATGT	1 cut(s)	223
PctI	GAATGC	1 cut(s)	68
PdmI	GAANNNNTTC	1 cut(s)	954
PfeI	GAWTC	2 cut(s)	486, 823
PkrI	GCNGC	4 cut(s)	19, 118, 344, 373
PleI	GAGTC	2 cut(s)	45, 590
PpsI	GAGTC	2 cut(s)	45, 590
PscI	ACATGT	1 cut(s)	223
Psp6I	CCWGG	1 cut(s)	744
PspGI	CCWGG	1 cut(s)	744
PspN4I	GGNNCC	1 cut(s)	718
PspPI	GGNCC	3 cut(s)	105, 411, 717
PstNI	CAGNNNCTG	2 cut(s)	348, 617
PsuI	RGATCY	1 cut(s)	672
PvuII	CAGCTG	2 cut(s)	20, 371
RsaI	GTAC	1 cut(s)	222
RsaNI	GTAC	1 cut(s)	221
RseI	CAYNNNNRTG	2 cut(s)	725, 891
SaqAI	TTAA	3 cut(s)	134, 492, 687
SatI	GCNGC	4 cut(s)	18, 117, 343, 372
Sau3AI	GATC	3 cut(s)	396, 672, 741
Sau96I	GGNCC	3 cut(s)	105, 411, 717
SchI	GAGTC	2 cut(s)	46, 591
ScrFI	CCNGG	3 cut(s)	746, 898, 899
SduI	GDGCHC	2 cut(s)	635, 898
SfaNI	GCATC	3 cut(s)	354, 544, 855
SfuI	TTCGAA	1 cut(s)	379
SinI	GGWCC	3 cut(s)	105, 411, 717
SmaI	CCCGGG	1 cut(s)	899
SmiMI	CAYNNNNRTG	2 cut(s)	725, 891
SrfI	GCCCGGGC	1 cut(s)	899
Sse9I	AATT	1 cut(s)	842
SseBI	AGGCCT	1 cut(s)	278
StuI	AGGCCT	1 cut(s)	278
StyD4I	CCNGG	3 cut(s)	744, 896, 897
StyI	CCWWGG	1 cut(s)	262
TaaI	ACNGT	2 cut(s)	220, 639
TaiI	ACGT	1 cut(s)	510
TaqI	TCGA	4 cut(s)	271, 379, 585, 948
TaqII	GACCGA	1 cut(s)	399
TasI	AATT	1 cut(s)	842
TatI	WGTACW	1 cut(s)	220
TfiI	GAWTC	2 cut(s)	486, 823
Tru1I	TTAA	3 cut(s)	134, 492, 687
Tru9I	TTAA	3 cut(s)	134, 492, 687
TscAI	CASTG	2 cut(s)	642, 727
TseFI	GTSAC	3 cut(s)	297, 325, 781
TseI	GCWGC	4 cut(s)	17, 116, 342, 371
Tsp45I	GTSAC	3 cut(s)	297, 325, 781
TspDTI	ATGAA	4 cut(s)	61, 320, 452, 815
TspMI	CCCGGG	1 cut(s)	897
TspRI	CASTG	2 cut(s)	642, 727
VpaK11BI	GGWCC	3 cut(s)	105, 411, 717
XapI	RAATTY	1 cut(s)	842
XceI	RCATGY	1 cut(s)	227
XmaI	CCCGGG	1 cut(s)	897
XmiI	GTMKAC	3 cut(s)	40, 436, 575
XmnI	GAANNNNTTC	1 cut(s)	954
Zsp2I	ATGCAT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.