Rh4BG350800

Belongs to the CTL (choline transporter-like) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0007935
Physical Location & Seq
Reverse (-)
51198623 .. 51202038
3416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG350800.1

Sequence Viewer

Length: 1398 bp
ATGGCGGCTGAGCCGTCACGGCGGTGGCGTGATGTTTTCTGGTTGGGGATATTTATGATTCATTTGATTTTATTGGGAGGTGCGCTGGCGGTTCTGGGGCTCAATAGGTTTAAGAGATCGGATAGGCTAAACTTAGATAGGTTCACCAATAAGTACTTGGAAAATCAGAAGGGATTGACTGAGGATTATTGGCCGCTTTATGCTCTTGCTGGTGGAGTTGGGACTGTTCTTGGTTGGACTTGGTTGCTGTTCCTTGGCTCGCAGGCGAATCACATGATGAAGATTGCGGTGCATATCTTGACCACTTATCTTGCTGTGCTCAGTGTTCTGTGTTTTTGGATGGAGCAGTTCTTCTGGGGAGTTGCATTTGCGATCGGCGCTGGGATGCTCTTCTTGTATGTTTTGGCAGTTATAGACAGACTACCCTTTACCATGCTCGTGCTACAAGCAGCTGTCAAGATGGTATGGAGTCTACCTGAAGTTATGAGGGTAGCATATGCATTCATGCTTATTATGCTTTTATGGATGGGAATATGGTCCTTTGGGGCTGCTGGTGTTGTAGCTTTAAGCATTGGAGATGGTGGACGCTGGTGGCTTCTTGTGGTTCTCTCTGTAAGCTTATTTTGGACGGGTGCTGTTCTCTGTAATACTGTACATGTTATAGTGTCTGGGATGGTGTTTCTTGTTCTTTCCCATGGTGGTCGAGAGGCCTCATCAATGCCTCCGAAGTCACTAATGAAGTCTCTTCGGTATGCAGTCACAACTTCTTTTGGCAGCATCTGCTATGGTTCACTTTTCACAGCTGCCATTCGAACTTTGCGCTGGAAGATCAGGGGAGTTCGGTCCAAGATTGGCAACAATGAGTGTCTACTTTGCTGTGTTGATTTCCTCTTTCATCTTGTGGAGACACTTGTGCGATTCTTTAATAAGTATGCTTACGTCCAGATAGCTGTTTCTGGCAAAGGTTTCAATCATTCAGCGAGGGATGCTTGGGAGTTATTTCAGTCTACTGGAGTCGAGGCACTCATTGCCTATGATTGCTCAGGTGCTGTATTATTGATGGGCACACTGTTGGGTGGGCTTATTACCGGAACTTGCTCGGGGATCTGGACATGGATTAAATATAGGGACAGAGTGGCTATGGTCGGGTCCACTGCAATGTTGATGGGAATGATCTTGGTGGGATTAGCAATGGTGGTTGTGGAAAGCGCTGTCACATCTATCTACATCTGTTATGCAGAAGACCCGTTGTTGATTCATAGGTGGGATGCTGAATTCTTCAACCAGATGTCGGAGATGCTACACCAGCGTCTTCAACATAGGAGTGCCCGGGCAAGGGAAGTGTTGACCCACAATCGGGTTGATAACCACCACACAGTCGAAACACTCCCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Choline_transpo

Protein Analysis

465

Amino Acids

52.22

Weight (kDa)

9.11

Isoelectric Point (pI)

34.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Choline_transpo PF04515 122 - 416 2.3e-58 Plasma-membrane choline transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 3 cut(s) 472, 868, 1007
AciI CCGC 5 cut(s) 5, 22, 89, 194, 287
AclWI GGATC 1 cut(s) 1112
AcoI YGGCCR 1 cut(s) 191
AcsI RAATTY 1 cut(s) 1274
AcuI CTGAAG 1 cut(s) 498
AfaI GTAC 2 cut(s) 155, 654
AfeI AGCGCT 1 cut(s) 1210
AfiI CCNNNNNNNGG 5 cut(s) 1291, 1335, 1336, 1356, 1357
AflIII ACRYGT 1 cut(s) 655
AgsI TTSAA 3 cut(s) 970, 1282, 1316
AleI CACNNNNGTG 1 cut(s) 22
AluBI AGCT 5 cut(s) 452, 563, 618, 803, 950
AluI AGCT 5 cut(s) 452, 563, 618, 803, 950
Alw21I GWGCWC 1 cut(s) 321
Alw26I GTCTC 2 cut(s) 747, 899
AlwI GGATC 1 cut(s) 1112
AlwNI CAGNNNCTG 2 cut(s) 780, 1049
Ama87I CYCGRG 2 cut(s) 1099, 1329
Aor51HI AGCGCT 1 cut(s) 1210
AoxI GGCC 2 cut(s) 191, 708
ApeKI GCWGC 4 cut(s) 449, 548, 774, 803
ApoI RAATTY 1 cut(s) 1274
AspLEI GCGC 4 cut(s) 85, 380, 822, 1211
AspS9I GGNCC 3 cut(s) 537, 843, 1149
AsuC2I CCSGG 2 cut(s) 1330, 1331
AsuHPI GGTGA 1 cut(s) 136
AsuII TTCGAA 1 cut(s) 811
AvaI CYCGRG 2 cut(s) 1099, 1329
AvaII GGWCC 3 cut(s) 537, 843, 1149
BaeGI GKGCMC 2 cut(s) 1067, 1330
BanII GRGCYC 1 cut(s) 102
BauI CACGAG 1 cut(s) 437
BbsI GAAGAC 2 cut(s) 1248, 1304
Bbv12I GWGCWC 1 cut(s) 321
BbvI GCAGC 4 cut(s) 461, 535, 786, 790
BccI CCATC 7 cut(s) 334, 454, 520, 572, 667, 1054, 1159
BceAI ACGGC 1 cut(s) 35
BcnI CCSGG 2 cut(s) 1330, 1331
BcoDI GTCTC 2 cut(s) 747, 899
BfoI RGCGCY 2 cut(s) 381, 1212
BglI GCCNNNNNGGC 1 cut(s) 19
BisI GCNGC 6 cut(s) 6, 194, 450, 549, 775, 804
BlpI GCTNAGC 1 cut(s) 9
BlsI GCNGC 6 cut(s) 7, 195, 451, 550, 776, 805
BmcAI AGTACT 1 cut(s) 155
Bme1390I CCNGG 2 cut(s) 1330, 1331
Bme18I GGWCC 3 cut(s) 537, 843, 1149
BmeT110I CYCGRG 2 cut(s) 1099, 1329
BmgT120I GGNCC 3 cut(s) 537, 843, 1149
BmiI GGNNCC 1 cut(s) 1150
BmrFI CCNGG 2 cut(s) 1330, 1331
BmsI GCATC 5 cut(s) 375, 786, 976, 1258, 1287
BpiI GAAGAC 2 cut(s) 1248, 1304
BpmI CTGGAG 1 cut(s) 1032
Bpu10I CCTNAGC 1 cut(s) 1042
Bpu1102I GCTNAGC 1 cut(s) 9
Bpu14I TTCGAA 1 cut(s) 811
BpuMI CCSGG 2 cut(s) 1330, 1331
BsaJI CCNNGG 3 cut(s) 253, 694, 1329
BsaWI WCCGGW 1 cut(s) 1088
Bsc4I CCNNNNNNNGG 5 cut(s) 1291, 1335, 1336, 1356, 1357
Bse1I ACTGG 1 cut(s) 1015
Bse3DI GCAATG 3 cut(s) 1026, 1164, 1197
BseDI CCNNGG 3 cut(s) 253, 694, 1329
BseGI GGATG 6 cut(s) 345, 390, 531, 678, 991, 1273
BseLI CCNNNNNNNGG 5 cut(s) 1291, 1335, 1336, 1356, 1357
BseMI GCAATG 3 cut(s) 1026, 1164, 1197
BseMII CTCAG 3 cut(s) 171, 334, 1056
BseNI ACTGG 1 cut(s) 1015
BseSI GKGCMC 2 cut(s) 1067, 1330
BseXI GCAGC 4 cut(s) 461, 535, 786, 790
BseYI CCCAGC 1 cut(s) 380
Bsh1285I CGRYCG 1 cut(s) 375
BshFI GGCC 2 cut(s) 193, 710
BsiEI CGRYCG 1 cut(s) 375
BsiHKAI GWGCWC 1 cut(s) 321
BsiHKCI CYCGRG 2 cut(s) 1099, 1329
BsiSI CCGG 2 cut(s) 1089, 1330
BslFI GGGAC 2 cut(s) 235, 1142
BslI CCNNNNNNNGG 5 cut(s) 1291, 1335, 1336, 1356, 1357
BsmAI GTCTC 2 cut(s) 747, 899
BsmFI GGGAC 2 cut(s) 235, 1142
BsmI GAATGC 1 cut(s) 500
BsnI GGCC 2 cut(s) 193, 710
BsoBI CYCGRG 2 cut(s) 1099, 1329
Bsp119I TTCGAA 1 cut(s) 811
Bsp1286I GDGCHC 4 cut(s) 102, 321, 1067, 1330
Bsp1407I TGTACA 1 cut(s) 652
Bsp143I GATC 5 cut(s) 116, 372, 828, 1104, 1173
Bsp1720I GCTNAGC 1 cut(s) 9
Bsp19I CCATGG 1 cut(s) 694
BspACI CCGC 5 cut(s) 5, 22, 89, 194, 287
BspANI GGCC 2 cut(s) 193, 710
BspCNI CTCAG 3 cut(s) 172, 333, 1055
BspLI GGNNCC 1 cut(s) 1150
BspPI GGATC 1 cut(s) 1112
BspQI GCTCTTC 1 cut(s) 395
BspT104I TTCGAA 1 cut(s) 811
BsrDI GCAATG 3 cut(s) 1026, 1164, 1197
BsrGI TGTACA 1 cut(s) 652
BsrI ACTGG 1 cut(s) 1015
BssECI CCNNGG 3 cut(s) 253, 694, 1329
BssMI GATC 5 cut(s) 116, 372, 828, 1104, 1173
BssSI CACGAG 1 cut(s) 437
BssT1I CCWWGG 2 cut(s) 253, 694
Bst2BI CACGAG 1 cut(s) 437
Bst4CI ACNGT 4 cut(s) 226, 652, 1071, 1378
Bst6I CTCTTC 2 cut(s) 395, 750
BstAPI GCANNNNNTGC 2 cut(s) 780, 1028
BstAUI TGTACA 1 cut(s) 652
BstBI TTCGAA 1 cut(s) 811
BstC8I GCNNGC 3 cut(s) 87, 260, 264
BstDEI CTNAG 5 cut(s) 9, 133, 180, 320, 1042
BstDSI CCRYGG 1 cut(s) 694
BstF5I GGATG 6 cut(s) 345, 390, 531, 678, 991, 1273
BstH2I RGCGCY 2 cut(s) 381, 1212
BstHHI GCGC 4 cut(s) 85, 380, 822, 1211
BstKTI GATC 5 cut(s) 119, 375, 831, 1107, 1176
BstMAI GTCTC 2 cut(s) 747, 899
BstMBI GATC 5 cut(s) 116, 372, 828, 1104, 1173
BstMCI CGRYCG 1 cut(s) 375
BstMWI GCNNNNNNNGC 7 cut(s) 19, 377, 514, 780, 986, 1028, 1306
BstNSI RCATGY 1 cut(s) 659
BstSCI CCNGG 2 cut(s) 1328, 1329
BstSLI GKGCMC 2 cut(s) 1067, 1330
BstV1I GCAGC 4 cut(s) 461, 535, 786, 790
BstV2I GAAGAC 2 cut(s) 1248, 1304
BstX2I RGATCY 1 cut(s) 1104
BstYI RGATCY 1 cut(s) 1104
BsuRI GGCC 2 cut(s) 193, 710
BtgI CCRYGG 1 cut(s) 694
BtsCI GGATG 6 cut(s) 345, 390, 531, 678, 991, 1273
BtsI GCAGTG 1 cut(s) 1152
BtsIMutI CAGTG 3 cut(s) 328, 1067, 1152
Cac8I GCNNGC 3 cut(s) 87, 260, 264
CaiI CAGNNNCTG 2 cut(s) 780, 1049
CfoI GCGC 4 cut(s) 85, 380, 822, 1211
Cfr13I GGNCC 3 cut(s) 537, 843, 1149
Cfr9I CCCGGG 1 cut(s) 1329
CseI GACGC 2 cut(s) 594, 1298
Csp6I GTAC 2 cut(s) 154, 653
CspCI CAANNNNNGTGG 2 cut(s) 292, 327
CviAII CATG 6 cut(s) 274, 433, 505, 656, 695, 1113
CviQI GTAC 2 cut(s) 154, 653
DdeI CTNAG 5 cut(s) 9, 133, 180, 320, 1042
DpnI GATC 5 cut(s) 118, 374, 830, 1106, 1175
DpnII GATC 5 cut(s) 116, 372, 828, 1104, 1173
EaeI YGGCCR 1 cut(s) 191
Eam1104I CTCTTC 2 cut(s) 395, 750
EarI CTCTTC 2 cut(s) 395, 750
Eco130I CCWWGG 2 cut(s) 253, 694
Eco147I AGGCCT 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 3 cut(s) 537, 843, 1149
Eco47III AGCGCT 1 cut(s) 1210
Eco57I CTGAAG 1 cut(s) 498
Eco88I CYCGRG 2 cut(s) 1099, 1329
EcoRI GAATTC 1 cut(s) 1274
EcoT14I CCWWGG 2 cut(s) 253, 694
EcoT22I ATGCAT 1 cut(s) 502
EcoT38I GRGCYC 1 cut(s) 102
ErhI CCWWGG 2 cut(s) 253, 694
FaeI CATG 6 cut(s) 277, 436, 508, 659, 698, 1116
FaqI GGGAC 2 cut(s) 235, 1142
FatI CATG 6 cut(s) 273, 432, 504, 655, 694, 1112
FauNDI CATATG 1 cut(s) 496
FblI GTMKAC 3 cut(s) 472, 868, 1007
Fnu4HI GCNGC 6 cut(s) 6, 194, 450, 549, 775, 804
FokI GGATG 6 cut(s) 352, 397, 538, 685, 998, 1280
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 6 cut(s) 6, 194, 450, 549, 775, 804
GlaI GCGC 4 cut(s) 84, 379, 821, 1210
GluI GCNGC 6 cut(s) 6, 194, 450, 549, 775, 804
GsaI CCCAGC 1 cut(s) 384
GsuI CTGGAG 1 cut(s) 1032
HaeII RGCGCY 2 cut(s) 381, 1212
HaeIII GGCC 2 cut(s) 193, 710
HapII CCGG 2 cut(s) 1089, 1330
HgaI GACGC 2 cut(s) 594, 1298
HhaI GCGC 4 cut(s) 85, 380, 822, 1211
Hin1II CATG 6 cut(s) 277, 436, 508, 659, 698, 1116
Hin6I GCGC 4 cut(s) 83, 378, 820, 1209
HinP1I GCGC 4 cut(s) 83, 378, 820, 1209
HincII GTYRAC 1 cut(s) 1347
HindII GTYRAC 1 cut(s) 1347
HindIII AAGCTT 1 cut(s) 616
HinfI GANTC 6 cut(s) 58, 268, 469, 918, 1014, 1255
HpaII CCGG 2 cut(s) 1089, 1330
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 8 cut(s) 144, 473, 584, 791, 869, 1008, 1152, 1347
Hpy188I TCNGA 4 cut(s) 121, 168, 726, 1294
Hpy188III TCNNGA 5 cut(s) 298, 457, 704, 943, 1108
Hpy8I GTNNAC 8 cut(s) 144, 473, 584, 791, 869, 1008, 1152, 1347
HpyAV CCTTC 1 cut(s) 163
HpyCH4III ACNGT 4 cut(s) 226, 652, 1071, 1378
HpyCH4IV ACGT 1 cut(s) 939
HpyCH4V TGCA 6 cut(s) 292, 365, 500, 755, 1157, 1238
HpyF10VI GCNNNNNNNGC 7 cut(s) 19, 377, 514, 780, 986, 1028, 1306
HpyF3I CTNAG 5 cut(s) 9, 133, 180, 320, 1042
HpySE526I ACGT 1 cut(s) 939
Hsp92II CATG 6 cut(s) 277, 436, 508, 659, 698, 1116
HspAI GCGC 4 cut(s) 83, 378, 820, 1209
Kzo9I GATC 5 cut(s) 116, 372, 828, 1104, 1173
LguI GCTCTTC 1 cut(s) 395
LmnI GCTCC 1 cut(s) 343
Lsp1109I GCAGC 4 cut(s) 461, 535, 786, 790
LweI GCATC 5 cut(s) 375, 786, 976, 1258, 1287
MaeII ACGT 1 cut(s) 939
MaeIII GTNAC 4 cut(s) 15, 729, 757, 1213
MalI GATC 5 cut(s) 118, 374, 830, 1106, 1175
MboI GATC 5 cut(s) 116, 372, 828, 1104, 1173
MboII GAAGA 8 cut(s) 292, 343, 382, 737, 838, 1253, 1270, 1304
MflI RGATCY 1 cut(s) 1104
MhlI GDGCHC 4 cut(s) 102, 321, 1067, 1330
MluCI AATT 1 cut(s) 1274
MlyI GAGTC 2 cut(s) 478, 1023
MmeI TCCRAC 2 cut(s) 215, 1272
MnlI CCTC 9 cut(s) 71, 175, 480, 700, 721, 732, 899, 975, 1012
Mph1103I ATGCAT 1 cut(s) 502
MseI TTAA 4 cut(s) 111, 566, 924, 1119
MslI CAYNNNNRTG 4 cut(s) 22, 437, 1157, 1323
MspA1I CMGCKG 2 cut(s) 452, 803
MspI CCGG 2 cut(s) 1089, 1330
MspR9I CCNGG 2 cut(s) 1330, 1331
Mva1269I GAATGC 1 cut(s) 500
MwoI GCNNNNNNNGC 7 cut(s) 19, 377, 514, 780, 986, 1028, 1306
NciI CCSGG 2 cut(s) 1330, 1331
NcoI CCATGG 1 cut(s) 694
NdeI CATATG 1 cut(s) 496
NdeII GATC 5 cut(s) 116, 372, 828, 1104, 1173
NlaIII CATG 6 cut(s) 277, 436, 508, 659, 698, 1116
NlaIV GGNNCC 1 cut(s) 1150
NmuCI GTSAC 4 cut(s) 15, 729, 757, 1213
NsiI ATGCAT 1 cut(s) 502
NspI RCATGY 1 cut(s) 659
NspV TTCGAA 1 cut(s) 811
OliI CACNNNNGTG 1 cut(s) 22
PceI AGGCCT 1 cut(s) 710
PciI ACATGT 1 cut(s) 655
PciSI GCTCTTC 1 cut(s) 395
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PctI GAATGC 1 cut(s) 500
PfeI GAWTC 4 cut(s) 58, 268, 918, 1255
PkrI GCNGC 6 cut(s) 7, 195, 451, 550, 776, 805
Ple19I CGATCG 1 cut(s) 375
PleI GAGTC 2 cut(s) 477, 1022
PpsI GAGTC 2 cut(s) 477, 1022
PscI ACATGT 1 cut(s) 655
PspFI CCCAGC 1 cut(s) 380
PspN4I GGNNCC 1 cut(s) 1150
PspPI GGNCC 3 cut(s) 537, 843, 1149
PstNI CAGNNNCTG 2 cut(s) 780, 1049
PsuI RGATCY 1 cut(s) 1104
PvuI CGATCG 1 cut(s) 375
PvuII CAGCTG 2 cut(s) 452, 803
RsaI GTAC 2 cut(s) 155, 654
RsaNI GTAC 2 cut(s) 154, 653
RseI CAYNNNNRTG 4 cut(s) 22, 437, 1157, 1323
SapI GCTCTTC 1 cut(s) 395
SaqAI TTAA 4 cut(s) 111, 566, 924, 1119
SatI GCNGC 6 cut(s) 6, 194, 450, 549, 775, 804
Sau3AI GATC 5 cut(s) 116, 372, 828, 1104, 1173
Sau96I GGNCC 3 cut(s) 537, 843, 1149
ScaI AGTACT 1 cut(s) 155
SchI GAGTC 2 cut(s) 478, 1023
ScrFI CCNGG 2 cut(s) 1330, 1331
SduI GDGCHC 4 cut(s) 102, 321, 1067, 1330
SfaNI GCATC 5 cut(s) 375, 786, 976, 1258, 1287
SfuI TTCGAA 1 cut(s) 811
SinI GGWCC 3 cut(s) 537, 843, 1149
SmaI CCCGGG 1 cut(s) 1331
SmiMI CAYNNNNRTG 4 cut(s) 22, 437, 1157, 1323
SrfI GCCCGGGC 1 cut(s) 1331
Sse9I AATT 1 cut(s) 1274
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 5 cut(s) 5, 22, 89, 194, 287
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 1328, 1329
StyI CCWWGG 2 cut(s) 253, 694
TaaI ACNGT 4 cut(s) 226, 652, 1071, 1378
TaiI ACGT 1 cut(s) 942
TaqI TCGA 4 cut(s) 703, 811, 1017, 1380
TaqII GACCGA 1 cut(s) 831
TasI AATT 1 cut(s) 1274
TatI WGTACW 2 cut(s) 153, 652
TauI GCSGC 2 cut(s) 8, 196
TfiI GAWTC 4 cut(s) 58, 268, 918, 1255
Tru1I TTAA 4 cut(s) 111, 566, 924, 1119
Tru9I TTAA 4 cut(s) 111, 566, 924, 1119
TscAI CASTG 3 cut(s) 328, 1074, 1159
TseFI GTSAC 4 cut(s) 15, 729, 757, 1213
TseI GCWGC 4 cut(s) 449, 548, 774, 803
Tsp45I GTSAC 4 cut(s) 15, 729, 757, 1213
TspDTI ATGAA 6 cut(s) 50, 293, 493, 752, 884, 1247
TspMI CCCGGG 1 cut(s) 1329
TspRI CASTG 3 cut(s) 328, 1074, 1159
VpaK11BI GGWCC 3 cut(s) 537, 843, 1149
XapI RAATTY 1 cut(s) 1274
XceI RCATGY 1 cut(s) 659
XcmI CCANNNNNNNNNTGG 1 cut(s) 154
XmaI CCCGGG 1 cut(s) 1329
XmiI GTMKAC 3 cut(s) 472, 868, 1007
ZrmI AGTACT 1 cut(s) 155
Zsp2I ATGCAT 1 cut(s) 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.