pycom13g04810

) transport protein 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0010761
Physical Location & Seq
Reverse (-)
3203742 .. 3204355
614 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 570 bp
ATGGCTGCCAAACTCTACGCCCTCGCCGTCATCCTCCTCCTCATCAGCATTGCCGGCAATGCAGCTGCCGAGGAACCACAGCAATGTGGGTCCAAATCCAAAGGACAATGCCACGACAAATCCAAGGCCTTGATACTGAAGACCATTGCTTTATTTGCCATTTTGGTTTCGGCTTTCCAACCCGGCAAAAACATGTTCGTCATTGTCAAAGCGTTCGCCTCCGGTGTCATACTTGCCACGGGGTACATGCACGTTTTGCCCGACTCGTTCGATTGCTTGACATCCGAGTGCTTGCCGGAACATCCGTGGAGGAAGTTTCCATTCACAACGTTCGTGGCAATGCTTTCAGCCGTTCTTACTCTCATGGTGGACTCGTTTTCAATGAGTCACTATAGGAAATATTTAGTTCGCGGTGCAGCTCGCGGCGAAGATGACGAGAATGCCAAAAATAGCTCTTCTCAAATAGAACCTTTTGGGTATGGTCATGACATTAAGACTGAAGATGGACTCGACGATAAGGATTCACAGTTGCTGAGATATCGTGTTGTGGCACAGGTATTAATCTTATGA

Protein Analysis

190

Amino Acids

20.72

Weight (kDa)

6.95

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 51 - 155 3.1e-18 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010761)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G04032
fragaria_vesca FvH4_4g28790 FvH4_4g28790 FvH4_5g31650
malus_domestica MD13G1054100.v1.1 MD15G1116800.v1.1 MD16G1052500.v1.1
prunus_persica Prupe.1G298100_v2.0.a1
pyrus_communis pycom13g04810 pycom15g10520
rosa_chinensis RchiOBHm_Chr4g0436921
rosa_laevigata RLG00000006486
rosa_multiflora Rmu_sc0001464.1_g000008
rosa_roxburghii Rroxscaffold_5G00377990
rosa_rugosa Rorug04G0297400
rosa_samantha Rh4AG351700 Rh4BG360700 Rh4CG375000 Rh4DG354900
rosa_wichuraiana Rw4G030780

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 411, 423
AciI CCGC 2 cut(s) 411, 423
AclI AACGTT 1 cut(s) 329
AcuI CTGAAG 2 cut(s) 158, 519
AfaI GTAC 1 cut(s) 245
AflIII ACRYGT 1 cut(s) 192
AgsI TTSAA 1 cut(s) 381
AluBI AGCT 3 cut(s) 65, 419, 453
AluI AGCT 3 cut(s) 65, 419, 453
AlwNI CAGNNNCTG 1 cut(s) 532
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 4 cut(s) 5, 62, 65, 416
AseI ATTAAT 1 cut(s) 560
AspS9I GGNCC 1 cut(s) 90
AsuC2I CCSGG 1 cut(s) 183
AvaII GGWCC 1 cut(s) 90
BbsI GAAGAC 1 cut(s) 146
BbvI GCAGC 3 cut(s) 52, 74, 428
BccI CCATC 1 cut(s) 497
BceAI ACGGC 2 cut(s) 11, 335
BcnI CCSGG 1 cut(s) 183
BfmI CTRYAG 1 cut(s) 391
BisI GCNGC 5 cut(s) 6, 63, 66, 417, 424
BlsI GCNGC 5 cut(s) 7, 64, 67, 418, 425
Bme1390I CCNGG 1 cut(s) 183
Bme18I GGWCC 1 cut(s) 90
BmgT120I GGNCC 1 cut(s) 90
BmiI GGNNCC 2 cut(s) 75, 91
BmrFI CCNGG 1 cut(s) 183
BpiI GAAGAC 1 cut(s) 146
BpuMI CCSGG 1 cut(s) 183
BsaJI CCNNGG 4 cut(s) 69, 123, 237, 305
BsaWI WCCGGW 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 53
Bse3DI GCAATG 5 cut(s) 48, 64, 89, 144, 345
BseDI CCNNGG 4 cut(s) 69, 123, 237, 305
BseGI GGATG 3 cut(s) 30, 281, 301
BseMI GCAATG 5 cut(s) 48, 64, 89, 144, 345
BseMII CTCAG 1 cut(s) 524
BseRI GAGGAG 2 cut(s) 26, 29
BseXI GCAGC 3 cut(s) 52, 74, 428
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 2 cut(s) 411, 423
BshFI GGCC 1 cut(s) 128
BsiSI CCGG 4 cut(s) 54, 183, 222, 296
BsmI GAATGC 1 cut(s) 445
BsnI GGCC 1 cut(s) 128
BspACI CCGC 2 cut(s) 411, 423
BspANI GGCC 1 cut(s) 128
BspCNI CTCAG 1 cut(s) 525
BspFNI CGCG 2 cut(s) 411, 423
BspHI TCATGA 1 cut(s) 484
BspLI GGNNCC 2 cut(s) 75, 91
BspQI GCTCTTC 1 cut(s) 460
BsrDI GCAATG 5 cut(s) 48, 64, 89, 144, 345
BsrFI RCCGGY 1 cut(s) 53
BssAI RCCGGY 1 cut(s) 53
BssECI CCNNGG 4 cut(s) 69, 123, 237, 305
BssT1I CCWWGG 1 cut(s) 123
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 460
BstAPI GCANNNNNTGC 1 cut(s) 256
BstC8I GCNNGC 3 cut(s) 55, 293, 421
BstDEI CTNAG 1 cut(s) 533
BstDSI CCRYGG 2 cut(s) 237, 305
BstF5I GGATG 3 cut(s) 30, 281, 301
BstFNI CGCG 2 cut(s) 411, 423
BstMWI GCNNNNNNNGC 4 cut(s) 54, 59, 155, 256
BstNSI RCATGY 2 cut(s) 196, 250
BstSCI CCNGG 1 cut(s) 181
BstSFI CTRYAG 1 cut(s) 391
BstUI CGCG 2 cut(s) 411, 423
BstV1I GCAGC 3 cut(s) 52, 74, 428
BstV2I GAAGAC 1 cut(s) 146
BsuRI GGCC 1 cut(s) 128
BtgI CCRYGG 2 cut(s) 237, 305
BtsCI GGATG 3 cut(s) 30, 281, 301
Cac8I GCNNGC 3 cut(s) 55, 293, 421
CaiI CAGNNNCTG 1 cut(s) 532
CciI TCATGA 1 cut(s) 484
Cfr10I RCCGGY 1 cut(s) 53
Cfr13I GGNCC 1 cut(s) 90
Csp6I GTAC 1 cut(s) 244
CspCI CAANNNNNGTGG 2 cut(s) 315, 350
CviAII CATG 4 cut(s) 193, 247, 364, 485
CviJI RGCY 7 cut(s) 5, 65, 128, 173, 350, 419, 453
CviKI_1 RGCY 7 cut(s) 5, 65, 128, 173, 350, 419, 453
CviQI GTAC 1 cut(s) 244
DdeI CTNAG 1 cut(s) 533
Eam1104I CTCTTC 1 cut(s) 460
EarI CTCTTC 1 cut(s) 460
Eco130I CCWWGG 1 cut(s) 123
Eco147I AGGCCT 1 cut(s) 128
Eco32I GATATC 1 cut(s) 539
Eco47I GGWCC 1 cut(s) 90
Eco57I CTGAAG 2 cut(s) 158, 519
EcoRV GATATC 1 cut(s) 539
EcoT14I CCWWGG 1 cut(s) 123
ErhI CCWWGG 1 cut(s) 123
FaeI CATG 4 cut(s) 196, 250, 367, 488
FaiI YATR 8 cut(s) 194, 230, 248, 365, 393, 480, 486, 568
FatI CATG 4 cut(s) 192, 246, 363, 484
Fnu4HI GCNGC 5 cut(s) 6, 63, 66, 417, 424
FokI GGATG 3 cut(s) 17, 268, 288
Fsp4HI GCNGC 5 cut(s) 6, 63, 66, 417, 424
GluI GCNGC 5 cut(s) 6, 63, 66, 417, 424
HaeIII GGCC 1 cut(s) 128
HapII CCGG 4 cut(s) 54, 183, 222, 296
Hin1II CATG 4 cut(s) 196, 250, 367, 488
HinfI GANTC 5 cut(s) 263, 371, 385, 507, 521
HpaII CCGG 4 cut(s) 54, 183, 222, 296
Hpy166II GTNNAC 1 cut(s) 370
Hpy188I TCNGA 1 cut(s) 286
Hpy188III TCNNGA 1 cut(s) 485
Hpy8I GTNNAC 1 cut(s) 370
Hpy99I CGWCG 1 cut(s) 515
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4IV ACGT 2 cut(s) 252, 329
HpyCH4V TGCA 3 cut(s) 62, 250, 416
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 59, 155, 256
HpyF3I CTNAG 1 cut(s) 533
HpySE526I ACGT 2 cut(s) 252, 329
Hsp92II CATG 4 cut(s) 196, 250, 367, 488
KroI GCCGGC 1 cut(s) 53
KroNI GCCGGC 1 cut(s) 55
LguI GCTCTTC 1 cut(s) 460
LpnPI CCDG 5 cut(s) 67, 196, 235, 309, 539
Lsp1109I GCAGC 3 cut(s) 52, 74, 428
MaeII ACGT 2 cut(s) 252, 329
MaeIII GTNAC 1 cut(s) 386
MboII GAAGA 4 cut(s) 151, 440, 447, 512
MlyI GAGTC 4 cut(s) 257, 365, 394, 501
MmeI TCCRAC 1 cut(s) 202
MnlI CCTC 7 cut(s) 32, 44, 47, 50, 64, 229, 303
MroNI GCCGGC 1 cut(s) 53
MseI TTAA 2 cut(s) 492, 560
MslI CAYNNNNRTG 2 cut(s) 82, 286
MspA1I CMGCKG 1 cut(s) 65
MspI CCGG 4 cut(s) 54, 183, 222, 296
MspR9I CCNGG 1 cut(s) 183
Mva1269I GAATGC 1 cut(s) 445
MvnI CGCG 2 cut(s) 411, 423
MwoI GCNNNNNNNGC 4 cut(s) 54, 59, 155, 256
NaeI GCCGGC 1 cut(s) 55
NciI CCSGG 1 cut(s) 183
NgoMIV GCCGGC 1 cut(s) 53
NlaIII CATG 4 cut(s) 196, 250, 367, 488
NlaIV GGNNCC 2 cut(s) 75, 91
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 386
NspI RCATGY 2 cut(s) 196, 250
PagI TCATGA 1 cut(s) 484
PceI AGGCCT 1 cut(s) 128
PciI ACATGT 1 cut(s) 192
PciSI GCTCTTC 1 cut(s) 460
PcsI WCGNNNNNNNCGW 2 cut(s) 24, 258
PctI GAATGC 1 cut(s) 445
PdiI GCCGGC 1 cut(s) 55
PfeI GAWTC 1 cut(s) 521
PkrI GCNGC 5 cut(s) 7, 64, 67, 418, 425
PleI GAGTC 4 cut(s) 257, 365, 393, 501
PpsI GAGTC 4 cut(s) 257, 365, 393, 501
PscI ACATGT 1 cut(s) 192
PshBI ATTAAT 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 329
PspN4I GGNNCC 2 cut(s) 75, 91
PspPI GGNCC 1 cut(s) 90
PstNI CAGNNNCTG 1 cut(s) 532
PvuII CAGCTG 1 cut(s) 65
RsaI GTAC 1 cut(s) 245
RsaNI GTAC 1 cut(s) 244
RseI CAYNNNNRTG 2 cut(s) 82, 286
SapI GCTCTTC 1 cut(s) 460
SaqAI TTAA 2 cut(s) 492, 560
SatI GCNGC 5 cut(s) 6, 63, 66, 417, 424
Sau96I GGNCC 1 cut(s) 90
SchI GAGTC 4 cut(s) 257, 365, 394, 501
ScrFI CCNGG 1 cut(s) 183
SetI ASST 7 cut(s) 67, 255, 332, 421, 455, 472, 558
SfcI CTRYAG 1 cut(s) 391
SinI GGWCC 1 cut(s) 90
SmiMI CAYNNNNRTG 2 cut(s) 82, 286
SseBI AGGCCT 1 cut(s) 128
SsiI CCGC 2 cut(s) 411, 423
SspI AATATT 1 cut(s) 401
StuI AGGCCT 1 cut(s) 128
StyD4I CCNGG 1 cut(s) 181
StyI CCWWGG 1 cut(s) 123
TaaI ACNGT 1 cut(s) 528
TaiI ACGT 2 cut(s) 255, 332
TaqI TCGA 2 cut(s) 270, 510
TauI GCSGC 1 cut(s) 426
TfiI GAWTC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 492, 560
Tru9I TTAA 2 cut(s) 492, 560
TseFI GTSAC 1 cut(s) 386
TseI GCWGC 4 cut(s) 5, 62, 65, 416
Tsp45I GTSAC 1 cut(s) 386
TspGWI ACGGA 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 90
VspI ATTAAT 1 cut(s) 560
XceI RCATGY 2 cut(s) 196, 250
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.